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  • 1
    Publication Date: 2014-10-09
    Description: Retinitis pigmentosa (RP), a genetically heterogeneous group of retinopathies that occur in both non-syndromic and syndromic forms, is caused by mutations in ~100 genes. Although recent advances in next-generation sequencing have aided in the discovery of novel RP genes, a number of the underlying contributing genes and loci remain to be identified. We investigated three siblings, born to asymptomatic parents of Italian–American descent, who each presented with atypical RP with systemic features, including facial dysmorphologies, psychomotor developmental delays recognized since early childhood, learning disabilities and short stature. RP-associated ophthalmological findings included salt-and-pepper retinopathy, attenuation of the arterioles and generalized rod–cone dysfunction as determined by almost extinguished electroretinogram in 2 of 3 siblings. Atypical for RP features included mottled macula at an early age and peripapillary sparing of the retinal pigment epithelium. Whole-exome sequencing data, queried under a recessive model of inheritance, identified compound heterozygous stop mutations, c.C199T:p.R67* and c.C322T:p.R108*, in the retinol dehydrogenase 11 ( RDH11 ) gene, resulting in a non-functional protein, in all affected children. In summary, deleterious mutations in RDH11 , an important enzyme for vision-related and systemic retinoic acid metabolism, cause a new syndrome with RP.
    Print ISSN: 0964-6906
    Electronic ISSN: 1460-2083
    Topics: Biology , Medicine
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  • 2
    Publication Date: 2015-03-01
    Description: Nonallelic homologous recombination (NAHR), occurring between low-copy repeats (LCRs) 〉10 kb in size and sharing 〉97% DNA sequence identity, is responsible for the majority of recurrent genomic rearrangements in the human genome. Recent studies have shown that transposable elements (TEs) can also mediate recurrent deletions and translocations, indicating the features of substrates that mediate NAHR may be significantly less stringent than previously believed. Using 〉4 kb length and 〉95% sequence identity criteria, we analyzed of the genome-wide distribution of long interspersed element (LINE) retrotransposon and their potential to mediate NAHR. We identified 17 005 directly oriented LINE pairs located 〈10 Mbp from each other as potential NAHR substrates, placing 82.8% of the human genome at risk of LINE–LINE-mediated instability. Cross-referencing these regions with CNVs in the Baylor College of Medicine clinical chromosomal microarray database of 36 285 patients, we identified 516 CNVs potentially mediated by LINEs. Using long-range PCR of five different genomic regions in a total of 44 patients, we confirmed that the CNV breakpoints in each patient map within the LINE elements. To additionally assess the scale of LINE–LINE/NAHR phenomenon in the human genome, we tested DNA samples from six healthy individuals on a custom aCGH microarray targeting LINE elements predicted to mediate CNVs and identified 25 LINE–LINE rearrangements. Our data indicate that LINE–LINE-mediated NAHR is widespread and under-recognized, and is an important mechanism of structural rearrangement contributing to human genomic variability.
    Print ISSN: 0305-1048
    Electronic ISSN: 1362-4962
    Topics: Biology
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  • 3
    Publication Date: 2015-10-06
    Description: The accumulation of large boulders related to waves generated either by tsunamis or extreme storm events has been observed in different areas of the Mediterranean Sea. Along the NE and E low-lying rocky coasts of Malta tens of large boulder deposits have been surveyed, measured and mapped. These boulders have been detached and moved from the seafloor and lowest parts of the coast by the action of sea waves. In the Sicily–Malta channel, heavy storms are common and originate from the NE and NW winds. Conversely, few severe earthquakes and tsunamis are recorded in historical documents to have hit the Maltese archipelago, originated by seismicity activity related mainly to the Malta Escarpment, the Sicily Channel Rift Zone and the Hellenic Arc. We present a multi-disciplinary study, which aims to define the characteristics of the boulder accumulations along the eastern coast of Malta, in order to assess the coastal geo-hazard implications triggered by the sheer ability of extreme waves to detach and move large rocky blocks inland. The wave heights required to transport coastal boulders were calculated using various hydrodynamic equations. Particular attention was devoted to the quantification of the input parameters required in the workings of these equations. The axis sizes of blocks were measured with 3-D digital photogrammetric techniques and their densities were obtained throughout the use of a N-type Schmidt Hammer. Moreover, AMS ages were obtained from selected marine organisms encrusted on some of the boulders in various coastal sites. The combination of the results obtained by hydrodynamic equations and the radiocarbon dating suggests that the majority of the boulders has been detached and moved by intense storm waves. Nonetheless, it is possible that some of them may have been transported by tsunami.
    Electronic ISSN: 2195-9269
    Topics: Geography , Geosciences
    Published by Copernicus on behalf of European Geosciences Union.
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  • 4
  • 5
    Publication Date: 2016-02-15
    Description: This paper investigates the Holocene vegetation dynamics for Burmarrad in Northwest Malta and provides a pollen-based quantitative palaeoclimatic reconstruction for this centrally located Mediterranean archipelago. The pollen record from this site provides new insight into the vegetation changes from 7280 to 1730 cal BP which correspond well with other regional records. The climate reconstruction for the area also provides strong correlation with southern (below 40° N) Mediterranean sites. Our interpretation suggests an initially open landscape during the early Neolithic, surrounding a large palaeobay, developing into a dense Pistacia scrubland ca. 6700 cal BP. From about 4450 cal BP the landscape once again becomes open, coinciding with the start of the Bronze Age on the archipelago. This period is concurrent with increased climatic instability (between 4500 and 3700 cal BP) which is followed by a gradual decrease in summer moisture availability in the late Holocene. During the early Roman occupation period (1972–1730 cal BP) the landscape remains generally open with a moderate increase in Olea. This increase corresponds to archaeological evidence for olive oil production in the area, along with increases in cultivated crop taxa and associated ruderal species, as well as a rise in fire events. The Maltese archipelago provides important insight into vegetation, human impacts, and climatic changes in an island context during the Holocene.
    Print ISSN: 1814-9324
    Electronic ISSN: 1814-9332
    Topics: Geosciences
    Published by Copernicus on behalf of European Geosciences Union.
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  • 6
    Publication Date: 2015-09-30
    Description: This paper investigates the Holocene vegetation dynamics for Burmarrad in north-west Malta and provides a pollen-based quantitative palaeoclimatic reconstruction for this centrally located Mediterranean archipelago. The pollen record from this site provides new insight into the vegetation changes from 7280 to 1730 cal BP which correspond well with other regional records. The climate reconstruction for the area also provides strong correlation with southern (below 40° N) Mediterranean sites. Our interpretation suggests an initially open landscape during the early Neolithic, surrounding a large palaeobay, developing into a dense Pistacia scrubland ca. 6700 cal BP. From about 4450 cal BP the landscape once again becomes open, coinciding with the start of the Bronze Age on the archipelago. This period is concurrent with increased climatic instability (between 4500 and 3700 cal BP) which is followed by a gradual decrease in summer moisture availability in the late Holocene. During the early Roman occupation period (1972 to 1730 cal BP) the landscape remains generally open with a moderate increase in Olea. This increase, corresponds to archaeological evidence for olive oil production in the area, along with increases in cultivated crop taxa and associated ruderal species, as well as a rise in fire events. The Maltese archipelago provides important insight into vegetation, human impacts and climatic changes in an island context during the Holocene.
    Print ISSN: 1814-9340
    Electronic ISSN: 1814-9359
    Topics: Geosciences
    Published by Copernicus on behalf of European Geosciences Union.
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  • 7
    Publication Date: 2022-06-09
    Description: A multidisciplinary approach has been applied to study sea level changes along the coast of Malta using data collected from underwater archaeological remains. The elevation of archaeological markers have been compared with predicted sea level curves providing new bodies of evidence that outline the vertical tectonic behaviour of this region, allowing estimation of the relative sea level changes that occurred in this area of the Mediterranean since the Bronze Age. During the Roman Age, sea level was at 1.36 +/- 0.1 m, while in the Midde Age it was at 0.56 +/- 0.2 m, in agreement with previous estimations for the Mediterranean region. Data indicate that Malta was tectonically stable during the studied period. The occurrence of the present-day notch along the coasts of the island indicates recent vertical stability of the area. The lack of MIS 5.5 deposits all over the island could simply be due to high rates of erosion, as its coasts are highly exposed to storm waves, rather than tectonic movements. However, even very slight vertical movements could completely remove field evidence. The relative stability of the Maltese Islands allowed a first attempt to provide a palaeoenvironmental reconstruction of its coasts at different time windows since the Last Glacial Maximum. The results have been used to infer time and mode of mammal dispersal to the island during the Pleistocene.
    Description: Published
    Description: 3.7. Dinamica del clima e dell'oceano
    Description: JCR Journal
    Description: restricted
    Keywords: Malta, archaeology, sea level, tectonics ; 05. General::05.09. Miscellaneous::05.09.99. General or miscellaneous
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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