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  • 1
    Publication Date: 2014-08-21
    Description: Genetic diversity is the amount of variation observed between DNA sequences from distinct individuals of a given species. This pivotal concept of population genetics has implications for species health, domestication, management and conservation. Levels of genetic diversity seem to vary greatly in natural populations and species, but the determinants of this variation, and particularly the relative influences of species biology and ecology versus population history, are still largely mysterious. Here we show that the diversity of a species is predictable, and is determined in the first place by its ecological strategy. We investigated the genome-wide diversity of 76 non-model animal species by sequencing the transcriptome of two to ten individuals in each species. The distribution of genetic diversity between species revealed no detectable influence of geographic range or invasive status but was accurately predicted by key species traits related to parental investment: long-lived or low-fecundity species with brooding ability were genetically less diverse than short-lived or highly fecund ones. Our analysis demonstrates the influence of long-term life-history strategies on species response to short-term environmental perturbations, a result with immediate implications for conservation policies.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Romiguier, J -- Gayral, P -- Ballenghien, M -- Bernard, A -- Cahais, V -- Chenuil, A -- Chiari, Y -- Dernat, R -- Duret, L -- Faivre, N -- Loire, E -- Lourenco, J M -- Nabholz, B -- Roux, C -- Tsagkogeorga, G -- Weber, A A-T -- Weinert, L A -- Belkhir, K -- Bierne, N -- Glemin, S -- Galtier, N -- England -- Nature. 2014 Nov 13;515(7526):261-3. doi: 10.1038/nature13685. Epub 2014 Aug 20.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉1] UMR 5554, Institute of Evolutionary Sciences, University Montpellier 2, Centre national de la recherche scientifique, Place E. Bataillon, 34095 Montpellier, France [2] Department of Ecology and Evolution, Biophore, University of Lausanne, 1015 Lausanne, Switzerland. ; 1] UMR 5554, Institute of Evolutionary Sciences, University Montpellier 2, Centre national de la recherche scientifique, Place E. Bataillon, 34095 Montpellier, France [2] UMR 7261, Institut de Recherches sur la Biologie de l'Insecte, Centre national de la recherche scientifique, Universite Francois-Rabelais, 37200 Tours, France. ; UMR 5554, Institute of Evolutionary Sciences, University Montpellier 2, Centre national de la recherche scientifique, Place E. Bataillon, 34095 Montpellier, France. ; Aix-Marseille Universite, Institut Mediterraneen de Biodiversite et d'Ecologie marine et continentale (IMBE) - CNRS - IRD - UAPV, 13007 Marseille, France. ; Department of Biology, University of South Alabama, Mobile, Alabama 36688-0002, USA. ; UMR 5558, Laboratoire de Biometrie et Biologie Evolutive, Universite Lyon 1, CNRS, 69622 Lyon, France. ; 1] UMR 5554, Institute of Evolutionary Sciences, University Montpellier 2, Centre national de la recherche scientifique, Place E. Bataillon, 34095 Montpellier, France [2] The School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London E1 4NS, UK. ; 1] UMR 5554, Institute of Evolutionary Sciences, University Montpellier 2, Centre national de la recherche scientifique, Place E. Bataillon, 34095 Montpellier, France [2] Department of Veterinary Medicine, University of Cambridge, Madingley Road, Cambridge CB3 0ES, UK.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25141177" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Ecology ; *Evolution, Molecular ; Genetic Variation/*genetics ; *Genetics, Population ; Genome/*genetics ; *Genomics ; *Phylogeny
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 2
    Publication Date: 2013-02-09
    Description: Microsatellites (SSRs) are highly susceptible to expansions and contractions. When located in a coding sequence, the insertion or the deletion of a single unit for a mono-, di-, tetra-, or penta(nucleotide)-SSR creates a frameshift. As a consequence, one would expect to find only very few of these SSRs in coding sequences because of their strong deleterious potential. Unexpectedly, genomes contain many coding SSRs of all types. Here, we report on a study of their evolution in a phylogenetic context using the genomes of four primates: human, chimpanzee, orangutan, and macaque. In a set of 5,015 orthologous genes unambiguously aligned among the four species, we show that, except for tri- and hexa-SSRs, for which insertions and deletions are frequently observed, SSRs in coding regions evolve mainly by substitutions. We show that the rate of substitution in all types of coding SSRs is typically two times higher than in the rest of coding sequences. Additionally, we observe that although numerous coding SSRs are created and lost by substitutions in the lineages, their numbers remain constant. This last observation suggests that the coding SSRs have reached equilibrium. We hypothesize that this equilibrium involves a combination of mutation, drift, and selection. We thus estimated the fitness cost of mono-SSRs and show that it increases with the number of units. We finally show that the cost of coding mono-SSRs greatly varies from function to function, suggesting that the strength of the selection that acts against them can be correlated to gene functions.
    Electronic ISSN: 1759-6653
    Topics: Biology
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  • 3
    Publication Date: 2014-08-20
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
    Published by Springer Nature
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  • 4
    Publication Date: 2008-10-06
    Print ISSN: 0737-4038
    Electronic ISSN: 1537-1719
    Topics: Biology
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