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  • 1
    Publication Date: 2012-11-08
    Description: ABSTRACT Most ray-based migration and tomography methods require a certain degree of smoothness of the depth velocity model. Since smoothing changes the velocity model, it is generally impossible to preserve the traveltime between all pairs of points in the model. Using conventional smoothing, the traveltime errors are particularly large at discontinuities in the velocity model. These errors are offset-dependent and they cause errors in both the depth and residual moveout (RMO) of depth migrated images. Here we propose a new method, Preserved-Traveltime Smoothing (PTS) with an objective of preserving traveltimes (and hence depths) at these discontinuities. This is accomplished by smoothing of velocity moments for anisotropic models using a specific cross-correlation filter with the desired smoothness properties. The method is valid for isotropic, transversely isotropic with vertical symmetry axis (VTI) and structural transverse isotropic (STI) models. The variations of the model parameters perpendicular to the symmetry axis of the anisotropy are assumed to be small.
    Print ISSN: 0016-8025
    Electronic ISSN: 1365-2478
    Topics: Geosciences , Physics
    Published by Wiley
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  • 2
    Publication Date: 2013-02-08
    Description: Blood production is ensured by rare, self-renewing haematopoietic stem cells (HSCs). How HSCs accommodate the diverse cellular stresses associated with their life-long activity remains elusive. Here we identify autophagy as an essential mechanism protecting HSCs from metabolic stress. We show that mouse HSCs, in contrast to their short-lived myeloid progeny, robustly induce autophagy after ex vivo cytokine withdrawal and in vivo calorie restriction. We demonstrate that FOXO3A is critical to maintain a gene expression program that poises HSCs for rapid induction of autophagy upon starvation. Notably, we find that old HSCs retain an intact FOXO3A-driven pro-autophagy gene program, and that ongoing autophagy is needed to mitigate an energy crisis and allow their survival. Our results demonstrate that autophagy is essential for the life-long maintenance of the HSC compartment and for supporting an old, failing blood system.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3579002/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3579002/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Warr, Matthew R -- Binnewies, Mikhail -- Flach, Johanna -- Reynaud, Damien -- Garg, Trit -- Malhotra, Ritu -- Debnath, Jayanta -- Passegue, Emmanuelle -- CA126792/CA/NCI NIH HHS/ -- HL092471/HL/NHLBI NIH HHS/ -- R01 CA126792/CA/NCI NIH HHS/ -- R01 CA184014/CA/NCI NIH HHS/ -- R01 HL111266/HL/NHLBI NIH HHS/ -- England -- Nature. 2013 Feb 21;494(7437):323-7. doi: 10.1038/nature11895. Epub 2013 Feb 6.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉The Eli and Edythe Broad Center for Regenerative Medicine and Stem Cell Research, Department of Medicine, Division of Hematology/Oncology, University of California San Francisco, San Francisco, California 94143, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23389440" target="_blank"〉PubMed〈/a〉
    Keywords: Aging ; Animals ; Apoptosis ; Autophagy/*genetics ; Caloric Restriction ; Cell Aging ; Cell Survival/genetics ; Cytokines/deficiency/metabolism ; Energy Metabolism/*genetics ; Food Deprivation ; Forkhead Transcription Factors/*metabolism ; *Gene Expression Regulation ; Hematopoietic Stem Cells/*cytology/*metabolism ; Homeostasis ; Mice ; Mice, Inbred C57BL ; Stress, Physiological/*genetics
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 3
    Publication Date: 2014-08-01
    Description: Haematopoietic stem cells (HSCs) self-renew for life, thereby making them one of the few blood cells that truly age. Paradoxically, although HSCs numerically expand with age, their functional activity declines over time, resulting in degraded blood production and impaired engraftment following transplantation. While many drivers of HSC ageing have been proposed, the reason why HSC function degrades with age remains unknown. Here we show that cycling old HSCs in mice have heightened levels of replication stress associated with cell cycle defects and chromosome gaps or breaks, which are due to decreased expression of mini-chromosome maintenance (MCM) helicase components and altered dynamics of DNA replication forks. Nonetheless, old HSCs survive replication unless confronted with a strong replication challenge, such as transplantation. Moreover, once old HSCs re-establish quiescence, residual replication stress on ribosomal DNA (rDNA) genes leads to the formation of nucleolar-associated gammaH2AX signals, which persist owing to ineffective H2AX dephosphorylation by mislocalized PP4c phosphatase rather than ongoing DNA damage. Persistent nucleolar gammaH2AX also acts as a histone modification marking the transcriptional silencing of rDNA genes and decreased ribosome biogenesis in quiescent old HSCs. Our results identify replication stress as a potent driver of functional decline in old HSCs, and highlight the MCM DNA helicase as a potential molecular target for rejuvenation therapies.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4456040/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4456040/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Flach, Johanna -- Bakker, Sietske T -- Mohrin, Mary -- Conroy, Pauline C -- Pietras, Eric M -- Reynaud, Damien -- Alvarez, Silvia -- Diolaiti, Morgan E -- Ugarte, Fernando -- Forsberg, E Camilla -- Le Beau, Michelle M -- Stohr, Bradley A -- Mendez, Juan -- Morrison, Ciaran G -- Passegue, Emmanuelle -- F32 HL106989/HL/NHLBI NIH HHS/ -- R01 CA184014/CA/NCI NIH HHS/ -- R01 HL092471/HL/NHLBI NIH HHS/ -- R01 HL115158/HL/NHLBI NIH HHS/ -- T32 AI007334/AI/NIAID NIH HHS/ -- England -- Nature. 2014 Aug 14;512(7513):198-202. doi: 10.1038/nature13619. Epub 2014 Jul 30.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉1] The Eli and Edythe Broad Center for Regenerative Medicine and Stem Cell Research, Department of Medicine, Hem/Onc Division, University of California San Francisco, San Francisco, California 94143, USA [2] Institute of Experimental Cancer Research, Comprehensive Cancer Center, 89081 Ulm, Germany. ; The Eli and Edythe Broad Center for Regenerative Medicine and Stem Cell Research, Department of Medicine, Hem/Onc Division, University of California San Francisco, San Francisco, California 94143, USA. ; Center for Chromosome Biology, School of Natural Sciences, National University of Ireland Galway, Galway, Ireland. ; Spanish National Cancer Research Centre (CNIO), E-28049 Madrid, Spain. ; Department of Pathology, University of California San Francisco, San Francisco, California 94143, USA. ; Institute for the Biology of Stem Cells, Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, California 95064, USA. ; Section of Hematology/Oncology and the Comprehensive Cancer Center, University of Chicago, Chicago, Illinois 60637, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25079315" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Cell Aging/genetics/*physiology ; Cell Proliferation ; DNA Damage/genetics ; DNA Replication/*physiology ; DNA, Ribosomal/genetics ; Female ; Gene Expression Regulation ; Hematopoietic Stem Cells/cytology/*pathology ; Histones/genetics/metabolism ; Male ; Mice ; Mice, Inbred C57BL ; Minichromosome Maintenance Proteins/genetics ; *Stress, Physiological
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 4
    Publication Date: 2019
    Electronic ISSN: 2041-1723
    Topics: Biology , Chemistry and Pharmacology , Natural Sciences in General , Physics
    Published by Springer Nature
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  • 5
    Electronic Resource
    Electronic Resource
    Amsterdam : Elsevier
    Biochemical and Biophysical Research Communications 197 (1993), S. 869-873 
    ISSN: 0006-291X
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Biology , Chemistry and Pharmacology , Physics
    Type of Medium: Electronic Resource
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  • 6
    ISSN: 0003-2697
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Biology , Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 7
    Electronic Resource
    Electronic Resource
    Springer
    The European physical journal 24 (2002), S. 323-329 
    ISSN: 1434-6052
    Source: Springer Online Journal Archives 1860-2000
    Topics: Physics
    Notes: Abstract. A modification of perturbation theory, known as the delta expansion (variationally improved perturbation), gave rigorously convergent series in some D=1 models (oscillator energy levels) with factorially divergent ordinary perturbative expansions. In a generalization of the variationally improved perturbation technique appropriate to renormalizable asymptotically free theories, we show that the large expansion orders of certain physical quantities are similarly improved, and prove the Borel convergence of the corresponding series for $m_{\mathrm {v}} \lessim 0$ , with $m_{\mathrm {v}}$ the new (arbitrary) mass perturbation parameter. We argue that non-ambiguous estimates of quantities relevant to dynamical (chiral) symmetry breaking in QCD are possible in this resummation framework.
    Type of Medium: Electronic Resource
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  • 8
    Publication Date: 1993-04-01
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 9
    Publication Date: 2015-02-11
    Description: Expansion of myeloid cells associated with solid tumor development is a key contributor to neoplastic progression. Despite their clinical relevance, the mechanisms controlling myeloid cell production and activity in cancer remains poorly understood. Using a multistage mouse model of breast cancer, we show that production of atypical T cell-suppressive neutrophils...
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 10
    Publication Date: 2002-06-01
    Print ISSN: 1434-6044
    Electronic ISSN: 1434-6052
    Topics: Physics
    Published by Springer
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