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  • 1
    Call number: PIK V 100-98-0176
    In: Forschungsbericht
    Type of Medium: Monograph available for loan
    Pages: 27 S.
    Series Statement: Forschungsbericht / Deutsches Zentrum für Luft- und Raumfahrt 98-04
    Location: A 18 - must be ordered
    Branch Library: PIK Library
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  • 2
    Monograph available for loan
    Monograph available for loan
    Hamburg : Max-Planck-Institut für Meteorologie
    Associated volumes
    Call number: ZSP-271-31
    In: Examensarbeit
    Type of Medium: Monograph available for loan
    Pages: 144 S. : Abb. ; 30 cm
    ISSN: 0938-5177
    Series Statement: Examensarbeit / Max-Planck-Institut für Meteorologie 31
    Branch Library: GFZ Library
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  • 3
    Publication Date: 2015-04-22
    Description: Idiopathic pulmonary fibrosis (IPF) is a devastating disease, and its pathogenic mechanisms remain incompletely understood. Peroxisomes are known to be important in ROS and proinflammatory lipid degradation, and their deficiency induces liver fibrosis. However, altered peroxisome functions in IPF pathogenesis have never been investigated. By comparing peroxisome-related protein and gene...
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 4
    Publication Date: 2014-11-07
    Description: Insulators functionally separate active chromatin domains from inactive ones. The insulator factor, CTCF, has been found to bind to boundaries and to mediate insulator function. CTCF binding sites are depleted for the histone modification H3K27me3 and are enriched for the histone variant H3.3. In order to determine whether demethylation of H3K27me3 and H3.3 incorporation are a requirement for CTCF binding at domain boundaries or whether CTCF causes these changes, we made use of the LacI DNA binding domain to control CTCF binding by the Lac inducer IPTG. Here we show that, in contrast to the related factor CTCFL, the N-terminus plus zinc finger domain of CTCF is sufficient to open compact chromatin rapidly. This is preceded by incorporation of the histone variant H3.3, which thereby removes the H3K27me3 mark. This demonstrates the causal role for CTCF in generating the chromatin features found at insulators. Thereby, spreading of a histone modification from one domain through the insulator into the neighbouring domain is inhibited.
    Print ISSN: 0305-1048
    Electronic ISSN: 1362-4962
    Topics: Biology
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  • 5
    Publication Date: 2011-09-17
    Description: Dysfunction of the intestinal epithelium is believed to result in the excessive translocation of commensal bacteria into the bowel wall that drives chronic mucosal inflammation in Crohn's disease, an incurable inflammatory bowel disease in humans characterized by inflammation of the terminal ileum. In healthy individuals, the intestinal epithelium maintains a physical barrier, established by the tight contact of cells. Moreover, specialized epithelial cells such as Paneth cells and goblet cells provide innate immune defence functions by secreting mucus and antimicrobial peptides, which hamper access and survival of bacteria adjacent to the epithelium. Epithelial cell death is a hallmark of intestinal inflammation and has been discussed as a possible pathogenic mechanism driving Crohn's disease in humans. However, the regulation of epithelial cell death and its role in intestinal homeostasis remain poorly understood. Here we demonstrate a critical role for caspase-8 in regulating necroptosis of intestinal epithelial cells (IECs) and terminal ileitis. Mice with a conditional deletion of caspase-8 in the intestinal epithelium (Casp8(DeltaIEC)) spontaneously developed inflammatory lesions in the terminal ileum and were highly susceptible to colitis. Casp8(DeltaIEC) mice lacked Paneth cells and showed reduced numbers of goblet cells, indicating dysregulated antimicrobial immune cell functions of the intestinal epithelium. Casp8(DeltaIEC) mice showed increased cell death in the Paneth cell area of small intestinal crypts. Epithelial cell death was induced by tumour necrosis factor (TNF)-alpha, was associated with increased expression of receptor-interacting protein 3 (Rip3; also known as Ripk3) and could be inhibited on blockade of necroptosis. Lastly, we identified high levels of RIP3 in human Paneth cells and increased necroptosis in the terminal ileum of patients with Crohn's disease, suggesting a potential role of necroptosis in the pathogenesis of this disease. Together, our data demonstrate a critical function of caspase-8 in regulating intestinal homeostasis and in protecting IECs from TNF-alpha-induced necroptotic cell death.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3373730/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3373730/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Gunther, Claudia -- Martini, Eva -- Wittkopf, Nadine -- Amann, Kerstin -- Weigmann, Benno -- Neumann, Helmut -- Waldner, Maximilian J -- Hedrick, Stephen M -- Tenzer, Stefan -- Neurath, Markus F -- Becker, Christoph -- AI037988/AI/NIAID NIH HHS/ -- R01 AI037988/AI/NIAID NIH HHS/ -- WT087768MA/Wellcome Trust/United Kingdom -- England -- Nature. 2011 Sep 14;477(7364):335-9. doi: 10.1038/nature10400.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Medicine 1, Friedrich-Alexander-University, D-91054 Erlangen, Germany.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21921917" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; *Apoptosis ; Caspase 8/genetics/*metabolism ; Colitis/enzymology/immunology/metabolism/pathology ; Crohn Disease/enzymology/immunology/*metabolism/*pathology ; Gene Deletion ; Goblet Cells/pathology ; Humans ; In Vitro Techniques ; Mice ; Necrosis ; Paneth Cells/enzymology/immunology/metabolism/pathology ; Receptor-Interacting Protein Serine-Threonine Kinases/metabolism ; Tumor Necrosis Factor-alpha/*metabolism
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 6
    Publication Date: 2014-09-05
    Description: Receptor interacting protein kinase 1 (RIPK1) has an essential role in the signalling triggered by death receptors and pattern recognition receptors. RIPK1 is believed to function as a node driving NF-kappaB-mediated cell survival and inflammation as well as caspase-8 (CASP8)-dependent apoptotic or RIPK3/MLKL-dependent necroptotic cell death. The physiological relevance of this dual function has remained elusive because of the perinatal death of RIPK1 full knockout mice. To circumvent this problem, we generated RIPK1 conditional knockout mice, and show that mice lacking RIPK1 in intestinal epithelial cells (IECs) spontaneously develop severe intestinal inflammation associated with IEC apoptosis leading to early death. This early lethality was rescued by antibiotic treatment, MYD88 deficiency or tumour-necrosis factor (TNF) receptor 1 deficiency, demonstrating the importance of commensal bacteria and TNF in the IEC Ripk1 knockout phenotype. CASP8 deficiency, but not RIPK3 deficiency, rescued the inflammatory phenotype completely, indicating the indispensable role of RIPK1 in suppressing CASP8-dependent apoptosis but not RIPK3-dependent necroptosis in the intestine. RIPK1 kinase-dead knock-in mice did not exhibit any sign of inflammation, suggesting that RIPK1-mediated protection resides in its kinase-independent platform function. Depletion of RIPK1 in intestinal organoid cultures sensitized them to TNF-induced apoptosis, confirming the in vivo observations. Unexpectedly, TNF-mediated NF-kappaB activation remained intact in these organoids. Our results demonstrate that RIPK1 is essential for survival of IECs, ensuring epithelial homeostasis by protecting the epithelium from CASP8-mediated IEC apoptosis independently of its kinase activity and NF-kappaB activation.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Takahashi, Nozomi -- Vereecke, Lars -- Bertrand, Mathieu J M -- Duprez, Linde -- Berger, Scott B -- Divert, Tatyana -- Goncalves, Amanda -- Sze, Mozes -- Gilbert, Barbara -- Kourula, Stephanie -- Goossens, Vera -- Lefebvre, Sylvie -- Gunther, Claudia -- Becker, Christoph -- Bertin, John -- Gough, Peter J -- Declercq, Wim -- van Loo, Geert -- Vandenabeele, Peter -- England -- Nature. 2014 Sep 4;513(7516):95-9. doi: 10.1038/nature13706.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉1] VIB Inflammation Research Center, Technologiepark 927, B-9052 Ghent, Belgium [2] Department of Biomedical Molecular Biology, Ghent University, Technologiepark 927, B-9052 Ghent, Belgium. ; Pattern Recognition Receptor Discovery Performance Unit, Immuno-inflammation Therapeutic Area, GlaxoSmithKline, Collegeville, Pennsylvania 19426, USA. ; 1] VIB Inflammation Research Center, Technologiepark 927, B-9052 Ghent, Belgium [2] Department of Biomedical Molecular Biology, Ghent University, Technologiepark 927, B-9052 Ghent, Belgium [3] VIB Bio Imaging Core Gent, Technologiepark 927, B-9052 Ghent, Belgium. ; Department of Medicine 1, Friedrich-Alexander-University, D-91054 Erlangen, Germany. ; 1] VIB Inflammation Research Center, Technologiepark 927, B-9052 Ghent, Belgium [2] Department of Biomedical Molecular Biology, Ghent University, Technologiepark 927, B-9052 Ghent, Belgium [3] Methusalem program, Ghent University, Technologiepark 927, B-9052 Ghent, Belgium.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25186904" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Anti-Bacterial Agents/pharmacology ; *Apoptosis/drug effects ; Caspase 8/genetics/metabolism ; Cell Survival/drug effects ; Epithelial Cells/*cytology/drug effects/*metabolism/pathology ; Epithelium/drug effects/*metabolism/pathology ; Female ; Gene Deletion ; *Homeostasis/drug effects ; Inflammation/metabolism/pathology ; Intestines/*cytology/drug effects/*metabolism/pathology ; Male ; Mice ; Mice, Knockout ; Myeloid Differentiation Factor 88/deficiency ; NF-kappa B/metabolism ; Necrosis ; Organoids/cytology/drug effects/enzymology/metabolism ; Protein Kinases/metabolism ; Receptor-Interacting Protein Serine-Threonine ; Kinases/deficiency/genetics/*metabolism ; Receptors, Tumor Necrosis Factor, Type I/deficiency ; Survival Analysis ; Tumor Necrosis Factors/pharmacology
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 7
    ISSN: 1089-7623
    Source: AIP Digital Archive
    Topics: Physics , Electrical Engineering, Measurement and Control Technology
    Notes: We present a comparative study of existing low-frequency noise reduction techniques for dc superconducting quantum interference devices (SQUIDS). These methods are essential to applications involving high-Tc SQUIDS because they dramatically reduce the 1/f noise to useful low-frequency noise levels. We propose a formal presentation of the problem and explain mathematically the working principles of these noise reductions methods, particularly for fluctuations arising from the critical current of the junctions. An increase in the white noise level is generally observed when a sinusoidal lock-in detection is used for these methods and we give here a mathematical explanation for this peculiar effect. Finally, noise measurements made on high-Tc grain boundary dc SQUIDS are presented; the experimental results are in close agreement with theory. © 1996 American Institute of Physics.
    Type of Medium: Electronic Resource
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  • 8
    ISSN: 1089-7623
    Source: AIP Digital Archive
    Topics: Physics , Electrical Engineering, Measurement and Control Technology
    Notes: A modified focused ion beam (FIB) equipment is described. It enables real time imaging by electron scanning microscopy during the FIB milling of cooled samples down to 82 K with liquid N2 cooling, or down to 25 K with liquid He cooling. Experimental results on the patterning of high Tc YBaCuO superconducting thin films are given which show the possibility of "in situ'' control of the critical current of micro or nanosuperconducting bridges during the milling. The application of this FIB system to the design of a microthermometer, operating in the pW(overdot)/(square root of)Hz range, and of a SQUID, whose Josephson effects correspond to a coherent vortex flow in nanobridges, is detailed. © 1996 American Institute of Physics.
    Type of Medium: Electronic Resource
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  • 9
    Electronic Resource
    Electronic Resource
    [S.l.] : American Institute of Physics (AIP)
    Review of Scientific Instruments 67 (1996), S. 4171-4175 
    ISSN: 1089-7623
    Source: AIP Digital Archive
    Topics: Physics , Electrical Engineering, Measurement and Control Technology
    Notes: We have fabricated a Josephson–Fraunhofer magnetometer based on the shrinking of the Fraunhofer pattern exhibited by high-Tc grain boundaries Josephson (GBJ) junctions. It is obtained using flux focuser and GBJ junction directly patterned on a single chip. The device is actively voltage biased and operates in a field locked loop as conventional superconducting quantum interference device systems. The amplitude of the auxiliary modulation field is adjusted to obtain the maximal sensitivity; the coupling between the feedback coil and the flux focuser has been studied to evaluate the magnetometer performances. The system bandwidth is 1 kHz and the measured noise level is 40 pT/(square root of)Hz above 10 Hz. The slew rate and the dynamic range of the magnetometer are 2 mT/s and 112 dB (1 Hz bandwidth), respectively. © 1996 American Institute of Physics.
    Type of Medium: Electronic Resource
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  • 10
    Electronic Resource
    Electronic Resource
    [S.l.] : American Institute of Physics (AIP)
    Journal of Applied Physics 76 (1994), S. 3858-3868 
    ISSN: 1089-7550
    Source: AIP Digital Archive
    Topics: Physics
    Notes: The bolometric nature of the optical sensitivity of YBCO (YBa2Cu3O7−δ) thin-film microstrips in the superconducting state is demonstrated. Below the critical temperature Tc the critical current temperature dependence of the device provides a suitable temperature sensor. A theoretical thermal model that gives reliable forecasts for the sensor time constant and sensitivity over the 10–90 K temperature range has been developed. Sensitivity measurements on high-quality YBCO films deposited on MgO are in quite good agreement with the model, showing that the observed signals are entirely bolometric. The effective heat capacity of the sensor is that of the film in the irradiated area. Owing to the high thermal conductivity of MgO, the substrate stays at the heat sink temperature and the main resistance to heat flow is the film/substrate interface. The heat capacity of the irradiated area of the film, strongly coupled to the heat sink through the thermal boundary resistance gives high-speed bolometers behaving as first-order systems. For SrTiO3 or ZrO2 substrates, their lower thermal conductivity would lead to higher time constants and more complicated behaviors. The precise origin of the measured sensor noise has still to be established. On a 0.2×10×15 μm3 microbridge at 85 K (below the critical temperature), a noise equivalent power of 120 pW/(square root of)Hz and a time constant τ of 20 ns were measured; this corresponds to a noise equivalent temperature of 60 nK/(square root of)Hz and a specific detectivity D* of 1.8×106 cm (square root of)Hz/W. A more relevant criterion for comparing optical sensors is the D*/(square root of)τ ratio. In the case presented, this ratio is equal to 1.3×1011 cm/J which is one of the best values published at this time. Such performances should give competitive composite or antenna coupled bolometers compared to existing sensors for wavelengths greater than 20 μm.
    Type of Medium: Electronic Resource
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