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  • 1
    Digitale Medien
    Digitale Medien
    New York, NY [u.a.] : Wiley-Blackwell
    Biospectroscopy 2 (1996), S. 173-183 
    ISSN: 1075-4261
    Schlagwort(e): Chemistry ; Analytical Chemistry and Spectroscopy
    Quelle: Wiley InterScience Backfile Collection 1832-2000
    Thema: Biologie , Physik
    Notizen: The fluorescent, oxazole yellow dye YO-Pro-1 iodide (YO) and its homodimer YOYO-1 iodide (YOYO) were studied in a thrombin-binding DNA ligand, or aptamer, (tb-ligand) and in an oligomer with the same base composition in a scrambled sequence (s-ligand), both single strands of 15 bases in length. Binding constants for the dye-ligand complexes, assuming 1:1 stoichiometry, were determined to be on the order of 107M-1 for YOYO and 105M-1 for YO, which are approximately 105 smaller than estimated constants for YOYO in double-stranded DNA. In both ligands, YOYO assumes a folded conformation that promotes stability of the dye-ligand complex and excitonic coupling between the two YO groups. The folded conformation provides greater overlap of the YO groups than has been reported for YOYO in double-stranded DNA; the overlap is slightly greater in tb-ligand than in s-ligand. Both dyes exhibit bi-exponential fluorescence decay in the ligands and the lifetimes of YOYO (3-4 ns and 7-8 ns) are longer and more discrete than those of YO (1-3 ns and 4-5 ns). Fluorescence anisotropy of YOYO is a low, constant value in both ligands due to intramolecular energy transfer between the overlapping YO groups. Higher anisotropies are observed for YO, and the value is slightly higher in s-ligand than in tb-ligand. The addition of thrombin to the s-ligand affects the fluorescence intensity and anisotropy of YO but not of YOYO. The absence of intermolecular G-quartet formation of the s-ligand was demonstrated. This suggests that thrombin interacts weakly with the s-ligand but is not sensed by the fluorescence of YOYO, which is dominated by the coupling between the YO groups in the folded conformation of the bound dye. The results of these studies have implications for the application of these dyes for detection of single-stranded DNA ligands and their binding interactions. © 1996 John Wiley & Sons, Inc.
    Zusätzliches Material: 6 Ill.
    Materialart: Digitale Medien
    Standort Signatur Erwartet Verfügbarkeit
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  • 2
    Publikationsdatum: 2020-03-31
    Print ISSN: 0269-249X
    Digitale ISSN: 2159-8347
    Thema: Biologie
    Publiziert von Taylor & Francis
    Standort Signatur Erwartet Verfügbarkeit
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  • 3
    Publikationsdatum: 2013-06-01
    Print ISSN: 0269-249X
    Digitale ISSN: 2159-8347
    Thema: Biologie
    Publiziert von Taylor & Francis
    Standort Signatur Erwartet Verfügbarkeit
    BibTip Andere fanden auch interessant ...
  • 4
  • 5
    Publikationsdatum: 2023-02-08
    Beschreibung: Highlights: • BDI, BIWQ, CEC, IDAP and SLA indices were strongly explained by sediment variables. • DES and SHE indices were explained by water and physical variables. • Isotope values at all sites indicated inorganic to organic impacts. • Microphytobenthos (MPB) δ15N values were significantly correlated to TDI, SPI and IDAP indices. • MPB δ15N values are strong indicators of nitrogen pollution across spatiotemporal gradients. Abstract: Rivers are impacted by pollutants from anthropogenic activities such as urbanisation and agricultural practices. Whilst point source pollution has been widely studied and in some cases remediated, non-point pollutant sources remain pervasive, particularly in developing countries that lack economic and human capacity. Monitoring of pollution levels in many regions is additionally challenged by a lack of robust indicators for nitrogen inputs, however, diatom community indices and analysis of variation in microphytobenthos (MBP) stable isotope analysis variations have potential. The present study investigates variations and utilities in benthic diatom indices and MPB δ15N along different river sections (n = 31) of an austral river between two seasons (wet and dry), testing for relationships with key environmental variables (physical, water and sediment), in the context of N monitoring. One hundred and eighteen diatom taxa belonging to 36 genera were identified, with physical (water flow), water (nitrate, P and total dissolved solids) and sediment (B, Ca, Cr, Na, N, P, SOM, Pb and Zn) variables correlating to one or more of the 12 diatom indices presented. In particular, Biological Diatom Index, Biological Index of Water Quality, Central Economic Community, Index of Artois-Picardie Diatom (IDAP) and Sládeček’s Index were strongly explained by sediment variables, whilst Descy’s Pollution Index and Schiefele and Schreiner’s Index were explained by water and physical variables. While MPB δ15N were within the “no impact” level in the wet and dry seasons at reference (i.e. unpolluted) sites, all sites located in agricultural or urban areas, and downstream of sewage discharges, had a wider range that encompassed increasing organic impacts (“inorganic impacts” to high “organic impacts”). Temperature and turbidity (negative), as well as dissolved oxygen, waterway width and depth (positive), significantly affected MPB δ15N, while effects of chemistry variables were less apparent. Overall, we found that MPB δ15N signatures were significantly correlated with Trophic Diatom Index, the Specific Pollution sensitivity Index and the Artois-Picardie Diatom Index, suggesting the utility of diatoms and MPB δ15N in assessments of aquatic pollution. In turn, MPB δ15N values are strong indicators of N pollution across spatial and seasonal gradients. Thus, the results showed the effects of sediment variables on diatoms to be strong, indicating that sediment rather than water characteristics more strongly structure diatom communities. Thus, sediments variables should be sampled when conducting bioassessment studies.
    Materialart: Article , PeerReviewed
    Standort Signatur Erwartet Verfügbarkeit
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