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  • Seismology  (5)
  • multi-locus sequence typing  (2)
  • Proventitious  (1)
  • Vascular trace  (1)
  • 1
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    Diaporthe diversity and pathogenicity revealed from a broad survey of grapevine diseases in Europe (2018)
    In:  Persoonia - Molecular Phylogeny and Evolution of Fungi (1878-9080) vol.40 (2018) p.135
    Details
    Publication Date: 2018-02-23
    Description: Species of Diaporthe are considered important plant pathogens, saprobes, and endophytes on a wide range of plant hosts. Several species are well-known on grapevines, either as agents of pre- or post-harvest infections, including Phomopsis cane and leaf spot, cane bleaching, swelling arm and trunk cankers. In this study we explore the occurrence, diversity and pathogenicity of Diaporthe spp. associated with Vitis vinifera in major grape production areas of Europe and Israel, focusing on nurseries and vineyards. Surveys were conducted in Croatia, Czech Republic, France, Hungary, Israel, Italy, Spain and the UK. A total of 175 Diaporthe strains were isolated from asymptomatic and symptomatic shoots, branches and trunks. A multi-locus phylogeny was established based on five genomic loci (ITS, tef1, cal, his3 and tub2), and the morphological characters of the isolates were determined. Preliminary pathogenicity tests were performed on green grapevine shoots with representative isolates. The most commonly isolated species were D. eres and D. ampelina. Four new Diaporthe species described here as D. bohemiae, D. celeris, D. hispaniae and D. hungariae were found associated with affected vines. Pathogenicity tests revealed D. baccae, D. celeris, D. hispaniae and D. hungariae as pathogens of grapevines. No symptoms were caused by D. bohemiae. This study represents the first report of D. ambigua and D. baccae on grapevines in Europe. The present study improves our understanding of the species associated with several disease symptoms on V. vinifera plants, and provides useful information for effective disease management.
    Keywords: canker ; multi-locus sequence typing ; pathogenicity ; Vitis
    Repository Name: National Museum of Natural History, Netherlands
    Type: Article / Letter to the editor
    Format: application/pdf
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  • 2
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    Diaporthe diversity and pathogenicity revealed from a broad survey of grapevine diseases in Europe (2018)
    In:  Persoonia - Molecular Phylogeny and Evolution of Fungi vol. 40, pp. 135-153
    Details
    Publication Date: 2024-01-12
    Description: Species of Diaporthe are considered important plant pathogens, saprobes, and endophytes on a wide range of plant hosts. Several species are well-known on grapevines, either as agents of pre- or post-harvest infections, including Phomopsis cane and leaf spot, cane bleaching, swelling arm and trunk cankers. In this study we explore the occurrence, diversity and pathogenicity of Diaporthe spp. associated with Vitis vinifera in major grape production areas of Europe and Israel, focusing on nurseries and vineyards. Surveys were conducted in Croatia, Czech Republic, France, Hungary, Israel, Italy, Spain and the UK. A total of 175 Diaporthe strains were isolated from asymptomatic and symptomatic shoots, branches and trunks. A multi-locus phylogeny was established based on five genomic loci (ITS, tef1, cal, his3 and tub2), and the morphological characters of the isolates were determined. Preliminary pathogenicity tests were performed on green grapevine shoots with representative isolates. The most commonly isolated species were D. eres and D. ampelina. Four new Diaporthe species described here as D. bohemiae, D. celeris, D. hispaniae and D. hungariae were found associated with affected vines. Pathogenicity tests revealed D. baccae, D. celeris, D. hispaniae and D. hungariae as pathogens of grapevines. No symptoms were caused by D. bohemiae. This study represents the first report of D. ambigua and D. baccae on grapevines in Europe. The present study improves our understanding of the species associated with several disease symptoms on V. vinifera plants, and provides useful information for effective disease management.
    Keywords: canker ; multi-locus sequence typing ; pathogenicity ; Vitis
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
    Format: application/pdf
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  • 3
    Electronic Resource
    Electronic Resource
    Ontogeny of the proventitious epicormic buds in Quercus petraea. (1999)
    Springer
    Trees 14 (1999), S. 83-90 
    Details
    ISSN: 0931-1890
    Keywords: Key words  Quercus petraea ; Epicormic bud ; Proventitious ; Vascular trace
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract  In the present work, we described the fate of proventitious epicormic buds on the trunks of 40-year-old Quercus petraea trees and in parallel the vascular trace they produced in the wood. Our results show that small and large individual epicormic buds can survive as buds for 40 years and that both are composed of a terminal meristem and scales. Meristematic areas are detected in the scale axils of small buds; in addition to these meristems the large buds also have secondary bud primordia. The small buds are connected to the pith of the main stem by a unique trace, whereas the large buds are connected by one or multiple traces. A single trace might imply that the whole bud is still alive and multiple traces might indicate that the terminal meristem has died. In the latter case, each trace is connected to a secondary bud of the large bud. The buds found in a cluster are composed of a terminal meristem and scales with axillary meristems in the scale axils. A cluster is connected to the pith of a stem either by a unique trace when it seems to be the result of partial abscission of an epicormic shoot or multiple traces when it might have originated from an epicormic bud in which the terminal meristem has died. Whatever the type of the bud, the vascular trace in the bark is composed of a cambium, secondary xylem and parenchyma cells and the trace present in the wood had parenchyma cells with vestiges of secondary xylem. Each year, the vascular trace should be produced in the bark by the cambium of the tree but not by the bud itself. On 40-year-old Q. petraea, we observed a proliferation of epicormic buds and in parallel a multiplication of the number of vascular traces in the trunk, but the knots caused by the traces of epicormic buds in the wood, either as individuals or in clusters, are minor since their colours are only slightly darker than those of woody rays and they are less than 2 mm in diameter. The knots will appear when epicormic buds develop into shoots.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/PL00009755
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  • 4
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    Crustal and uppermost mantle structure variation beneath La Reunion hotspot track (2015)
    Oxford University Press
    Details
    Publication Date: 2015-08-08
    Description: The Piton de la Fournaise basaltic volcano, on La Réunion Island in the western Indian Ocean, is one of the most active volcanoes in the world. This volcano is classically considered as the surface expression of an upwelling mantle plume and its activity is continuously monitored, providing detailed information on its superficial dynamics and on the edifice structure. Deeper crustal and upper mantle structure under La Réunion Island is surprisingly poorly constrained, motivating this study. We used receiver function techniques to determine a shear wave velocity profile through the crust and uppermost mantle beneath La Réunion, but also at other seismic stations located on the hotspot track, to investigate the plume and lithosphere interaction and its evolution through time. Receiver functions (RFs) were computed at permanent broad-band seismic stations from the GEOSCOPE network (on La Réunion and Rodrigues), at IRIS stations MRIV and DGAR installed on Mauritius and Diego Garcia islands, and at the GEOFON stations KAAM and HMDM on the Maldives. We performed non-linear inversions of RFs through modelling of P -to- S conversions at various crustal and upper mantle interfaces. Joint inversion of RF and surface wave dispersion data suggests a much deeper Mohorovičić discontinuity (Moho) beneath Mauritius (~21 km) compared to La Réunion (~12 km). A magmatic underplated body may be present under La Réunion as a thin layer (≤3 km thick), as suggested by a previous seismic refraction study, and as a much thicker layer beneath other stations located on the hotspot track, suggesting that underplating is an important process resulting from the plume–lithosphere interaction. We find evidence for a strikingly low velocity layer starting at about 33 km depth beneath La Réunion that we interpret as a zone of partial melt beneath the active volcano. We finally observe low velocities below 70 km beneath La Réunion and below 50 km beneath Mauritius that could represent the base of the oceanic lithosphere.
    Keywords: Seismology
    Print ISSN: 0956-540X
    Electronic ISSN: 1365-246X
    Topics: Geosciences
    Published by Oxford University Press on behalf of The Deutsche Geophysikalische Gesellschaft (DGG) and the Royal Astronomical Society (RAS).
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  • 5
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    Sources of secondary microseisms in the Indian Ocean (2015)
    Oxford University Press
    Details
    Publication Date: 2015-06-28
    Description: Ocean waves activity is a major source of microvibrations that travel through the solid Earth, known as microseismic noise and recorded worldwide by broadband seismometers. Analysis of microseismic noise in continuous seismic records can be used to investigate noise sources in the oceans such as storms, and their variations in space and time, making possible the regional and global-scale monitoring of the wave climate. In order to complete the knowledge of the Atlantic and Pacific oceans microseismic noise sources, we analyse 1 yr of continuous data recorded by permanent seismic stations located in the Indian Ocean basin. We primarily focus on secondary microseisms (SM) that are dominated by Rayleigh waves between 6 and 11 s of period. Continuous polarization analyses in this frequency band at 15 individual seismic stations allow us to quantify the number of polarized signal corresponding to Rayleigh waves, and to retrieve their backazimuths ( BAZ ) in the time–frequency domain. We observe clear seasonal variations in the number of polarized signals and in their frequencies, but not in their BAZ that consistently point towards the Southern part of the basin throughout the year. This property is very peculiar to the Indian Ocean that is closed on its Northern side, and therefore not affected by large ocean storms during Northern Hemisphere winters. We show that the noise amplitude seasonal variations and the backazimuth directions are consistent with the source areas computed from ocean wave models.
    Keywords: Seismology
    Print ISSN: 0956-540X
    Electronic ISSN: 1365-246X
    Topics: Geosciences
    Published by Oxford University Press on behalf of The Deutsche Geophysikalische Gesellschaft (DGG) and the Royal Astronomical Society (RAS).
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  • 6
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    Crustal and mantle structure beneath the Terre Adelie Craton, East Antarctica: insights from receiver function and seismic anisotropy measurements (2014)
    Oxford University Press
    Details
    Publication Date: 2014-12-17
    Description: The Terre Adélie and George V Land (East Antarctica) represent key areas for understanding tectonic relationships between terranes forming the Neoarchean-Palaeoproterozoic Terre Adélie Craton (TAC) and the neighbouring lithospheric blocks, together with the nature of its boundary. This region that represents the eastern border of the TAC is limited on its eastern side by the Mertz shear zone (MSZ) separating more recent Palaeozoic units from the craton. The MSZ, that recorded dextral strike-slip movement at 1.7 and 1.5 Ga, is likely correlated with the Kalinjala or Coorong shear zone in South Australia, east of the Gawler Craton and may therefore represent a frozen lithospheric-scale structure. In order to investigate the lithospheric structure of the TAC and the MSZ, we deployed from 2009 October to 2011 October four temporary seismic stations, which sampled the various lithospheric units of the TAC and of the neighbouring Palaeozoic block, together with the MSZ. We used receiver function method to deduce Moho depths and seismic anisotropy technique to infer the upper mantle deformation. Results from receiver functions analysis reveal Moho at 40–44 km depth beneath the TAC, at 36 km under the MSZ and at 28 km beneath the eastern Palaeozoic domain. The MSZ therefore delimits two crustal blocks of different thicknesses with a vertical offset of the Moho of 12 km. Seismic anisotropy deduced from SKS splitting at stations on the TAC shows fast polarisation directions () trending E–W, that is, parallel to the continental margin, and delay times ( t ) ranging from 0.8 to 1.6 s. These results are similar to the splitting parameters observed at the permanent GEOSCOPE Dumont D'Urville station (DRV: 95°N, t 1.1 s) located in the Palaeoproterozoic domain of TAC. On the MSZ, the small number of good quality measurements limits the investigation of the deep signature of the shear zone. However, the station in the Palaeozoic domain shows trending N60°E, which is significantly different to the trending measurements from stations on the TAC, suggesting that the MSZ may also represent a major frontier between the Neoarchean-Palaeoproterozoic and Palaeozoic terranes.
    Keywords: Seismology
    Print ISSN: 0956-540X
    Electronic ISSN: 1365-246X
    Topics: Geosciences
    Published by Oxford University Press on behalf of The Deutsche Geophysikalische Gesellschaft (DGG) and the Royal Astronomical Society (RAS).
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  • 7
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    Analyses of extreme swell events on La Reunion Island from microseismic noise (2016)
    Oxford University Press
    Details
    Publication Date: 2016-11-04
    Description: Ocean wave activity excites seismic waves that propagate through the solid earth, known as microseisms, which, once recorded on oceanic islands, can be used to analyse the swell. Here, we analyse the microseismic noise recorded in different period ranges by the permanent seismic station RER on La Réunion Island and by a temporary network of 10 broad-band seismic stations deployed on the island to analyse extreme swell events. We perform a comparative analysis of cyclonic and austral swell events by analysing not only the primary (PM, ~10–20 s period) and secondary (SM, ~3–10 s) microseisms but also the long-period secondary microseisms (LPSMs, ~ 7–10 s), which may result from the interaction between incident ocean waves and the reflected waves off the coast. We compare the microseismic observations with buoy data when available and with hindcasts from numerical ocean wave models. We show that each cyclone is characterized by its own individual signature in the SM, which depends not only on its distance and intensity but also on its dynamics and trajectory. Thus, the SM contains relevant information for cyclone detection and monitoring. Analysing the PM and the LPSM, and comparing it to direct buoy observations and/or wave numerical models allows characterizing the local impact of the swell with the island in terms of amplitude, period, and sometimes, direction of propagation, making possible to use a seismic station as an ocean wave gauge. The microseisms, which link the atmosphere, the ocean and the solid Earth, can thus provide valuable observations on extreme swell events, in addition to oceanic and meteorological data.
    Keywords: Seismology
    Print ISSN: 0956-540X
    Electronic ISSN: 1365-246X
    Topics: Geosciences
    Published by Oxford University Press on behalf of The Deutsche Geophysikalische Gesellschaft (DGG) and the Royal Astronomical Society (RAS).
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  • 8
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    Orienting ocean-bottom seismometers from P-wave and Rayleigh wave polarizations (2017)
    Oxford University Press
    Details
    Publication Date: 2017-01-12
    Description: We present two independent, automated methods for estimating the absolute horizontal misorientation of seismic sensors. We apply both methods to 44 free-fall ocean-bottom seismometers (OBSs) of the RHUM-RUM experiment ( http://www.rhum-rum.net/ ). The techniques measure the 3-D directions of particle motion of (1) P -waves and (2) Rayleigh waves of earthquake recordings. For P -waves, we used a principal component analysis to determine the directions of particle motions (polarizations) in multiple frequency passbands. We correct for polarization deviations due to seismic anisotropy and dipping discontinuities using a simple fit equation, which yields significantly more accurate OBS orientations. For Rayleigh waves, we evaluated the degree of elliptical polarization in the vertical plane in the time and frequency domain. The results obtained for the RHUM-RUM OBS stations differed, on average, by 3.1° and 3.7° between the methods, using circular mean and median statistics, which is within the methods’ estimate uncertainties. Using P -waves, we obtained orientation estimates for 31 ocean-bottom seismometers with an average uncertainty (95 per cent confidence interval) of 11° per station. For 7 of these OBS, data coverage was sufficient to correct polarization measurements for underlying seismic anisotropy and dipping discontinuities, improving their average orientation uncertainty from 11° to 6° per station. Using Rayleigh waves, we obtained misorientation estimates for 40 OBS, with an average uncertainty of 16° per station. The good agreement of results obtained using the two methods indicates that they should also be useful for detecting misorientations of terrestrial seismic stations.
    Keywords: Seismology
    Print ISSN: 0956-540X
    Electronic ISSN: 1365-246X
    Topics: Geosciences
    Published by Oxford University Press on behalf of The Deutsche Geophysikalische Gesellschaft (DGG) and the Royal Astronomical Society (RAS).
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