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  • Life and Medical Sciences  (4)
  • Sediment trapping
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  • 1
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    Journal of Morphology 192 (1987), S. 27-42 
    ISSN: 0362-2525
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: The fate and possible roles of the cytoskeleton in the process of conjugation in the hyptrich ciliate Euplotes aediculatus were investigated. Following the coalescence of the plasma membranes of the conjugant cells, a fusion zone or bridge of cytoplasm contributed by both partners is constructed. The sub-alveolar microtubule layers of the vegetative cell cortex remain in place to define the fusion zone boundaries after cell union. The initial fusion zone consists primarily of featureless ground cytoplasm; soon the ground plasm becomes crowded with microtubules and anastomosing smooth endoplasmic reticulum, which become displaced only late in conjugation as the migratory pronuclei are exchanged between partners. Fusion zone microtubules, functioning in some undetermined way, may be involved in the nuclear migration. Resorption of the posterior portion of each partner's buccal apparatus results in the degradation of the component cilia within acid phosphatase-positive autophagic bodies. Silver staining for light microscopy shows that the late fusion zone contracts forward from the posterior border, then constricts to separate the conjugants. In some separating pairs remnants of a microfilamentous assembly are seen at the posterior edge of the fusion zone; the full extent of this system may be masked by partial degradation due to osmium tetroxide fixation. Treatment of conjugants for 6 hours with cytochalasin B prevents separation, possibly through inhibition of the actin-like microfilament assembly in the fusion zone. The observations and experiments favor a model of cell separation following conjugation in which the fusion zone is resorbed by motile or contractile processes occurring within or around the fusion bridge itself.
    Additional Material: 21 Ill.
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  • 2
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    Journal of Morphology 192 (1987), S. 43-61 
    ISSN: 0362-2525
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: The formation and subsequent dissolution of a common bridge of cytoplasm between conjugating ciliated protozoan cells provides an excellent opportunity to follow the dynamics of the cellular membrane systems involved in this process. In particular, separation of conjugant partners offers the chance to observe, at a fixed site on the cell surface, how the ciliate surface complex of plasma and alveolar membranes (collectively termed the “pellicle”) is constructed. Consequently, cortical and cellular membranes of Euplotes aediculatus were studied by light and electron microscopy through the conjugation sequence. A conjugant fusion zone of shared cytoplasm elaborates between the partner cells within their respective oral fields (peristomes) to include microtubules, cytosol, and a concentrated endoplasmic reticulum (heavily stained by osmium impregnation techniques) that may also be continuous with cortical ER of each cell. Cortical membranes displacd by fusion are autolyzed in acid phosphatase-positive lysosomes in the fusion zone. As conjugants separate, expansion of the plasma membrane may occur through the fusion of vesicles with the plasma membrane, presumably at bare membrane, presumably at bare membrane patches near the fusion zone. The underlying cortical alveolar membranes and their plate-like contents are reconstructed beneath the plasma membrane, apparently by multiple fusions of dense-cored alveolar precursor vesicles (APVs). These precursor vesicles themselves appear to condense directly from the smooth ER present in the fusion zone. No Golgi apparatus was visible in the fusion zone cytoplasm, and no step of APV maturation that might involve the Golgi complex was noted.
    Additional Material: 22 Ill.
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  • 3
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Journal of Cellular Physiology 124 (1985), S. 391-396 
    ISSN: 0021-9541
    Keywords: Life and Medical Sciences ; Cell & Developmental Biology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: The addition of human platelet-derived growth factor (PDGF) to confluent, quiescent cultures of human diploid fibroblasts induced the rapid breakdown of cellular polyphosphoinositides. The levels of 32P-labeled phosphatidylinositol 4,5-bisphosphate (PIP2), phosphatidylinositol 4-phosphate (PIP), and phosphatidylinositol (PI) decreased by 30 to 40% within 1 min after exposure of the cells to PDGF. The levels of PIP and PIP2 returned to their initial values within 3 and 10 min, respectively, after PDGF addition. The level of PI continued to increase after it had returned to control values and was up threefold within 30 min after PDGF addition. In cells prelabeled with myo-[3H]inositol PDGF caused an eightfold increase in the levels of inositol trisphosphate (IP3) within 2 min. Lesser increases, twofold and 1.3-fold, respectively, were seen in levels of inositol bisphosphate (IP2) and inositol monophosphate (IP). Within 10 min after PDGF addition the levels of all three inositol phosphates had decreased to control values. The levels of IP3 measured 2 min after PDGF addition depended on the PDGF concentration and were maximal at 5-10 ng/ml of PDGF. Similar concentrations of PDGF stimulate maximal cell growth and DNA synthesis in these cells.
    Additional Material: 5 Ill.
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  • 4
    ISSN: 0192-253X
    Keywords: Transposable element ; Transcription factor ; Suppression ; Life and Medical Sciences ; Genetics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology
    Notes: We have used the yellow gene of Drosophila melanogaster as a model system in which to study the molecular mechanisms by which the gypsy retrotransposon causes mutant phenotypes that can be reversed by nonalleiic mutations at the suppressor of Hairy-wing locus. This gene encodes a 109,000 dalton protein that contains an acidic domain and 12 copies of the Zn finger motif, which are characteristic of some transcription factors and DNA binding proteins. The suppressible y2 allele is caused by the insertion of the gypsy element at -700 bp from the start of transcription of the Yellow gene, resulting in a phenotype characterized by mouth parts and denticle belts in the larvae, and by bristles in the adults, that show wildtype coloration, but mutant wings and body cuticle in the adult flies. This phenotype is the result of the interaction of gypsy sequences homologous to mammalian enhancers with tissue-specific yellow transcriptional regulatory elements located upstream from the gypsy insertion site and responsible for the expression of the yellow gene in the mutated tissues. This interaction is dependent on the binding of the su(Hw) protein to the specific gypsy sequences involved in the induction of the mutant phenotype.
    Additional Material: 4 Ill.
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  • 5
    Publication Date: 2022-05-25
    Description: Author Posting. © The Author(s), 2012. This is the author's version of the work. It is posted here by permission of Elsevier B.V. for personal use, not for redistribution. The definitive version was published in Continental Shelf Research 60, Suppl. (2013): S40–S57, doi:10.1016/j.csr.2012.02.004.
    Description: Tidal flats at a river mouth feature estuarine and fluvial processes that distinguish them from tidal flats without river discharge. We combine field observations and a numerical model to investigate hydrodynamics and sediment transport on deltaic tidal flats at the mouth of the Skagit River, in Puget Sound, WA during the spring freshet. River discharge over tidal flats supplies a mean volume flux, freshwater buoyancy, and suspended sediment. Despite the shallow water depths, strong horizontal density fronts and stratification develop, resulting in a baroclinic pressure gradient and tidal variability in stratification that favor flood-directed bottom stresses. In addition to these estuarine processes, the river discharge during periods of low tide drains through a network of distributary channels on the exposed tidal flats, with strongly ebb-directed stresses. The net sediment transport depends on the balance between estuarine and fluvial processes, and is modulated on a spring-neap time scale by the tides of Puget Sound. We find that the baroclinic pressure gradient and periodic stratification enhance trapping of sediment delivered by the river on the tidal flats, particularly during neap tides, and that sediment trapping also depends on settling and scour lags, particularly for finer particles. The primary means of moving sediment off of the tidal flats are the high velocities and stresses in the distributary channels during late stages of ebbs and around low tides, with sediment export predominantly occurring during spring low tides that expose a greater portion of the flats. The 3-d finite volume numerical model was evaluated against observations and had good skill overall, particularly for velocity and salinity. The model performed poorly at simulating the shallow flows around low tides as the flats drained and river discharge was confined to distributary channels, due in part to limitations in grid resolution, seabed sediment and bathymetric data, and the wetting-and-drying scheme. Consequently, the model predicted greater sediment retention on the flats than was observed.
    Description: This work was supported by the Office of Naval Research.
    Keywords: Tidal flats ; Sediment transport ; Sediment trapping ; Distributary channels ; Stratification ; Salinity fronts ; Tidal asymmetry ; Velocity skewness ; Numerical model
    Repository Name: Woods Hole Open Access Server
    Type: Preprint
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  • 6
    Publication Date: 2022-05-25
    Description: Author Posting. © American Geophysical Union, 2012. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research 117 (2012): C10013, doi:10.1029/2012JC008124.
    Description: Analyses of field observations and numerical model results have identified that sediment transport in the Hudson River estuary is laterally segregated between channel and shoals, features frontal trapping at multiple locations along the estuary, and varies significantly over the spring-neap tidal cycle. Lateral gradients in depth, and therefore baroclinic pressure gradient and stratification, control the lateral distribution of sediment transport. Within the saline estuary, sediment fluxes are strongly landward in the channel and seaward on the shoals. At multiple locations, bottom salinity fronts form at bathymetric transitions in width or depth. Sediment convergences near the fronts create local maxima in suspended-sediment concentration and deposition, providing a general mechanism for creation of secondary estuarine turbidity maxima at bathymetric transitions. The lateral bathymetry also affects the spring-neap cycle of sediment suspension and deposition. In regions with broad, shallow shoals, the shoals are erosional and the channel is depositional during neap tides, with the opposite pattern during spring tides. Narrower, deeper shoals are depositional during neaps and erosional during springs. In each case, the lateral transfer is from regions of higher to lower bed stress, and depends on the elevation of the pycnocline relative to the bed. Collectively, the results indicate that lateral and along-channel gradients in bathymetry and thus stratification, bed stress, and sediment flux lead to an unsteady, heterogeneous distribution of sediment transport and trapping along the estuary rather than trapping solely at a turbidity maximum at the limit of the salinity intrusion.
    Description: This research was funded by a grant from the Hudson River Foundation (#002/07A). D.R. was partially supported by the Office of Naval Research (N00014-08-1-0846).
    Description: 2013-04-17
    Keywords: Estuarine turbidity maximum ; Lateral sediment distribution ; Salinity fronts ; Sediment flux ; Sediment trapping ; Stratification
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 7
    Publication Date: 2022-05-26
    Description: Author Posting. © American Geophysical Union, 2010. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research 115 (2010): C10040, doi:10.1029/2010JC006248.
    Description: A 3-D hydrodynamic model is used to investigate how different size classes of river-derived sediment are transported, exported and trapped on an idealized, river-dominated tidal flat. The model is composed of a river channel flanked by sloping tidal flats, a configuration motivated by the intertidal region of the Skagit River mouth in Washington State, United States. It is forced by mixed tides and a pulse of freshwater and sediment with various settling velocities. In this system, the river not only influences stratification but also contributes a significant cross-shore transport. As a result, the bottom stress is strongly ebb-dominated in the channel because of the seaward advance of strong river flow as the tidal flats drain during ebbs. Sediment deposition patterns and mass budgets are sensitive to settling velocity. The lateral sediment spreading scales with an advective distance (settling time multiplied by lateral flow speed), thereby confining the fast settling sediment classes in the channel. Residual sediment transport is landward on the flats, because of settling lag, but is strongly seaward in the channel. The seaward transport mainly occurs during big ebbs and is controlled by a length scale ratio Ld/XWL, where Ld is a cross-shore advective distance (settling time multiplied by river outlet velocity), and XWL is the immersed cross-shore length of the intertidal zone. Sediment trapping requires Ld/XWL 〈 1, leading to more trapping for the faster settling classes. Sensitivity studies show that including stratification and reducing tidal range both favor sediment trapping, whereas varying channel geometries and asymmetry of tides has relatively small impacts. Implications of the modeling results on the south Skagit intertidal region are discussed.
    Description: SNC is supported by a WHOI/USGS postdoctoral scholarship. The field program on the Skagit intertidal region is supported by an ONR grant N00014-08-1-0790.
    Keywords: Sediment trapping ; Tidal flat
    Repository Name: Woods Hole Open Access Server
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  • 8
    Publication Date: 2022-05-26
    Description: Author Posting. © American Geophysical Union, 2013. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geophysical Research Letters 40 (2013): 5451–5455, doi:10.1002/2013GL057906.
    Description: Tropical Storms Irene and Lee in 2011 produced intense precipitation and flooding in the U.S. Northeast, including the Hudson River watershed. Sediment input to the Hudson River was approximately 2.7 megaton, about 5 times the long-term annual average. Rather than the common assumption that sediment is predominantly trapped in the estuary, observations and model results indicate that approximately two thirds of the new sediment remained trapped in the tidal freshwater river more than 1 month after the storms and only about one fifth of the new sediment reached the saline estuary. High sediment concentrations were observed in the estuary, but the model results suggest that this was predominantly due to remobilization of bed sediment. Spatially localized deposits of new and remobilized sediment were consistent with longer term depositional records. The results indicate that tidal rivers can intercept (at least temporarily) delivery of terrigenous sediment to the marine environment during major flow events.
    Description: This research was supported by grants from the Hudson Research Foundation (002/07A) and the National Science Foundation (1232928).
    Description: 2014-04-18
    Keywords: Sediment transport ; Tidal river ; Estuary ; Sediment trapping
    Repository Name: Woods Hole Open Access Server
    Type: Article
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