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  • Key words: Retroposons — Retrotranscripts —Alu elements — SINEs — Integration target  (1)
  • Single nucleosome tracking  (1)
  • 1
    Publication Date: 2022-05-25
    Description: Author Posting. © The Author(s), 2017. This is the author's version of the work. It is posted here by permission of Cell Press for personal use, not for redistribution. The definitive version was published in Molecular Cell 67 (2017): 282-293, doi:10.1016/j.molcel.2017.06.018.
    Description: The eukaryotic genome is organized within cells as chromatin. For proper information output, higher-order chromatin structures can be regulated dynamically. How such structures form and behave in various cellular processes remains unclear. Here, by combining super-resolution imaging (photoactivated localization microscopy, PALM) and single nucleosome tracking, we developed a nuclear imaging system to visualize the higher-order structures along with their dynamics in live mammalian cells. We demonstrated that nucleosomes form compact domains with a peak diameter of ~160 nm and move coherently in live cells. The heterochromatin-rich regions showed more domains and less movement. With cell differentiation, the domains became more apparent, with reduced dynamics. Furthermore, various perturbation experiments indicated that they are organized by a combination of factors, including cohesin and nucleosome–nucleosome interactions. Notably, we observed the domains during mitosis, suggesting that they act as building blocks of chromosomes and may serve as information units throughout the cell cycle.
    Description: This work was supported by MEXT and JSPS grants (23115005 and 16H04746, respectively) and a JST CREST grant (JPMJCR15G2).
    Description: 2018-07-13
    Keywords: Chromatin ; Chromosome ; Chromatin domain ; PALM ; Chromatin dynamics ; Single nucleosome tracking
    Repository Name: Woods Hole Open Access Server
    Type: Preprint
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  • 2
    Electronic Resource
    Electronic Resource
    Springer
    Journal of molecular evolution 50 (2000), S. 232-237 
    ISSN: 1432-1432
    Keywords: Key words: Retroposons — Retrotranscripts —Alu elements — SINEs — Integration target
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract. We conducted comprehensive sequence analysis of 5′ flanking regions of primate Alu elements. Information contents were computed and frequencies of 1024 pentanucleotides were measured to approximate the location of a characteristic sequence and to specify its pattern(s), which may be involved in the integration of Alu elements into their host genomes. A large number of samples was used, the wide region of the 5′ end of Alu elements was analyzed, and comparisons were made among different subfamilies. Through our analyses, ``TTTTAAAAA'' or ``(T) m (A) n '' can be stated as a candidate for the characteristic sequence pattern, which resides around the region 5 to 20 base pairs upstream of the 5′ end of Alu elements. This characteristic sequence pattern was more prominent in the sequences of younger Alus, which is a strong indication that the sequence pattern has a role at the time of Alu integration.
    Type of Medium: Electronic Resource
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