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  • river restoration  (2)
  • Computational Methods, Massively Parallel (Deep) Sequencing, Genomics  (1)
  • connectivity  (1)
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  • 1
    Digitale Medien
    Digitale Medien
    Springer
    Hydrobiologia 303 (1995), S. 183-194 
    ISSN: 1573-5117
    Schlagwort(e): river restoration ; revitalization ; river management ; ecological improvement
    Quelle: Springer Online Journal Archives 1860-2000
    Thema: Biologie
    Notizen: Abstract An analysis of restoration projects carried out both in Austria and abroad shows that most projects are limited to design measures within the river bed with the general intention to increase habitat diversity. The various measures are not based on the type-specific characteristics of the river and thus there is a danger of creating uniform restoration stretches, independent of the specific landscape area, river morphology, discharge regime or site specific biocoenoses. Such proceeding lacks in considering a comprehensive improvement of ecological functioning of the whole river-system. To meet those demands a type-specific guiding view (‘Leitbild’) has to be developed based on the pristine river conditions. The comparison of the river pattern including the characteristic features of its unmodified state with the actual situation leads to a comprehensive set of measures. The essential goals of such management-concepts are the integrity of the river habitat, self-regulation and self-regeneration, the preservation of intact resources, as well as the possibility to experience the uniqueness, diversity and beauty of natural river landscapes.
    Materialart: Digitale Medien
    Standort Signatur Erwartet Verfügbarkeit
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  • 2
    Digitale Medien
    Digitale Medien
    Springer
    Hydrobiologia 303 (1995), S. 195-206 
    ISSN: 1573-5117
    Schlagwort(e): river restoration ; instream structures ; land/water ecotone ; fish fauna
    Quelle: Springer Online Journal Archives 1860-2000
    Thema: Biologie
    Notizen: Abstract Investigations of fifteen sections of seven Austrian epipotamal (barbel region) streams between 1981 and 1984 demonstrate the impact of instream river bed structures on fish communities. Reduced spatial heterogeneity due to river straightening resulted in decreasing species number, diversity, stock density and biomass. Reincreased variability of the river bed in the frame of a subsequent restructuring project improved all community-specific values significantly within a 3-year investigation period (1988–1990). Besides the regained habitat variability in form of riffle pool sequences and other instream structures, the newly created riparian zones obviously provided important niches, e.g. as refuge areas during flooding and as nursery grounds for fish fry. The positive effects of the recreated land/water ecotone are discussed with respect to river restoration projects.
    Materialart: Digitale Medien
    Standort Signatur Erwartet Verfügbarkeit
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  • 3
    Digitale Medien
    Digitale Medien
    Springer
    Hydrobiologia 422-423 (2000), S. 85-97 
    ISSN: 1573-5117
    Schlagwort(e): ecological integrity ; running waters ; fish ecology ; extended serial discontinuity concept ; connectivity
    Quelle: Springer Online Journal Archives 1860-2000
    Thema: Biologie
    Notizen: Abstract Current ecological theories and concepts describe running waters as four-dimensional systems, their longitudinal, lateral and vertical linkages, interactions and exchange processes varying over time and over different scales. According to Ward & Stanford's (1983) extended serial discontinuity concept (ESDC), along a three-reach river, model the relative strength of the longitudinal pathways is highest in the constrained headwaters, vertical interactions reach their maximum in the braided middle course and lateral connectivity plays the major role in alluvial floodplain rivers. The present paper examines the general tenets of the ESDC from a fundamental fish ecology perspective. Specifically, it focuses on the degree to which the spatial/temporal connectivity requirements of fish communities or key fish species along a schematic longitudinal river course are compatible with the underlying principles of the ESDC and whether these requirements provide basic criteria for assessing the ecological integrity of running waters. From the fish ecological perspective, the examples provided here demonstrate a principle agreement with the concept of the four-dimensional nature of running waters, whose key functional and structural elements are spatial/temporal fluvial dynamics, disturbances, connectivity, succession and ecotones. Fish are particularly useful indicators of the temporally variable connectivities on the full range of scales at the three spatial dimensions. As far as the habitat requirements of typical species/developmental stages are concerned, two major modifications of the ESDC are needed. In constrained headwaters, in addition to longitudinal connectivity, the crucial importance of the vertical pathway river/bed sediments for reproduction must be emphasized. Also, in addition to lateral connectivity, longitudinal connectivity remains a vital basis for potamal fish communities in alluvial braided and meandering zones.
    Materialart: Digitale Medien
    Standort Signatur Erwartet Verfügbarkeit
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  • 4
    Publikationsdatum: 2014-08-15
    Beschreibung: Next-generation sequencing (NGS) technologies enable new insights into the diversity of virus populations within their hosts. Diversity estimation is currently restricted to single-nucleotide variants or to local fragments of no more than a few hundred nucleotides defined by the length of sequence reads. To study complex heterogeneous virus populations comprehensively, novel methods are required that allow for complete reconstruction of the individual viral haplotypes. Here, we show that assembly of whole viral genomes of ~8600 nucleotides length is feasible from mixtures of heterogeneous HIV-1 strains derived from defined combinations of cloned virus strains and from clinical samples of an HIV-1 superinfected individual. Haplotype reconstruction was achieved using optimized experimental protocols and computational methods for amplification, sequencing and assembly. We comparatively assessed the performance of the three NGS platforms 454 Life Sciences/Roche, Illumina and Pacific Biosciences for this task. Our results prove and delineate the feasibility of NGS-based full-length viral haplotype reconstruction and provide new tools for studying evolution and pathogenesis of viruses.
    Schlagwort(e): Computational Methods, Massively Parallel (Deep) Sequencing, Genomics
    Print ISSN: 0305-1048
    Digitale ISSN: 1362-4962
    Thema: Biologie
    Publiziert von Oxford University Press
    Standort Signatur Erwartet Verfügbarkeit
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