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  • Chemistry  (1)
  • Internal dynamics  (1)
  • 1
    ISSN: 1573-5001
    Keywords: Lewisx ; Off-resonance ROESY ; Solution structure ; Internal dynamics
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Summary A recent 1H NMR method has been applied to the determination of the solution structure and internal dynamics of a synthetic mixed C/O trisaccharide related to sialyl Lewisx. Varying the rf field offset in ROESY-type experiments enabled the measurement of longitudinal and transverse dipolar cross-relaxation rates with high accuracy. Assuming that for each proton pair the motion could be represented by a single exponential autocorrelation function, it was possible to derive geometrical parameters (r) and dynamic parameters τcp. With this assumption, 224 cross-relaxation rates have been transformed into 30 interproton distance constraints and 30 dipolar correlation times. The distance constraints have been used in a simulated-annealing procedure. This trisaccharide exhibits a structure close to the O-glycosidic analogue, but its flexibility seems highly reduced. On the basis of the determined structure and dynamics, it is shown that no conformational exchange occurs, the molecule existing in the form of a unique family in aqueous solution. In order to assess the quality of the resulting structures and to validate this new experimental procedure of distance extraction, we finally compare these solution structures to the ones obtained using three different sets of distances deduced from three choices of internal reference. It appears that this procedure allows the determination of the most precise and accurate solution.
    Type of Medium: Electronic Resource
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  • 2
    ISSN: 0030-4921
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Description / Table of Contents: A total analysis of the NMR spectra of 6-deoxy-L-hexopyranoses in the α-configuration and of the corresponding β-anomers was carried out. The parameters obtained are characteristic of a 1C (L) chair conformation, having the anomeric substituent in an axial orientation for the methyl α-fuco-, α-rhamno- and α-chinovopyranosides and for the α-fuco- and α-rhamnopyranosyl chlorides. The structure is also of a 1C (L) chair type for the methyl β-fuco- and β-chinovopyranosides; the geometry is the same for the β-fuco- and β-rhamnopyranosyl chlorides despite the anomeric effect of a chlorine atom. However, the NMR parameters of the β-chinovopyranosyl chloride are not explicable on the basis of a chair conformation with an equatorial chlorine or a boat structure.
    Notes: Une analyse complète des spectres RMN de désoxy-6 L-hexopyrannoses de configuration α et des anomères β correspondants est réalisée. L'ensemble des paramètres obtenus confirme l'existence d'une structure chaise 1C (L) présentant une disposition axiale du substituant anomère dans le cas des α-fuco-, α-rhamno- et α-chinovopyrannosides de méthyle et des chlorures de α-fuco- et α-rhamnopyrannosyle. La structure reste de type chaise 1C (L) dans le cas des β-fuco- et β-chinovopyrannosides de méthyle. Il en est de même en dépit de I'effect anomère dû à I'atome de chlore, pour les chlorures de β-fuco-et β-rhamnopyrannosyle. Par contre les paramètres RMN du chlorure de β-chinovopyrannosyle ne semblent interprétables ni sur la base d'une géométrie chaise à chlore équatorial ni par une structure bateau.
    Additional Material: 2 Ill.
    Type of Medium: Electronic Resource
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