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  • 1
    Electronic Resource
    Electronic Resource
    Springer
    European biophysics journal 14 (1987), S. 349-358 
    ISSN: 1432-1017
    Keywords: Staphylococcus aureus ; α-toxin ; ionic channel ; activation energy ; oligomerization ; fluorescence ; lipid vesicles ; planar lipid membranes
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Physics
    Notes: Abstract Staphylococcus aureus α-toxin forms ionic channels of large size in lipid bilayer membranes. We have developed two methods for studying the mechanism of pore formation. One is based on measurement of the ionic current flowing through a planar lipid membrane after exposure to the toxin; the other is based on measuring the release of the fluorescent complex Tb-Dipicolinic acid from large unilamellar vesicles under similar conditions. Both methods indicate that the pore formation process is complex, showing an initial delay followed by non-linear kinetics. The power dependence of the pore formation rate on the toxin concentration in planar bilayers indicates that an aggregation mechanism underlies the channel assembly. Arrhenius plots, obtained with both techniques, show no deviation from linearity up to 50°C and the derived activation energies are found to be comparable to those for the binding and the lysis of rabbit erythrocytes by the same toxin. The temperature dependence of the conductance induced in planar bilayers by a large number of toxin channels indicates that the pores are filled with aqueous solution. The analysis of single conductance events shows that a heterogeneous population of pores exist and that smaller channels are preferred at low temperature. We attribute this heterogeneity to the existence of pores resulting from the aggregation of different numbers of monomers.
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  • 2
    ISSN: 1432-1424
    Keywords: α-toxin ; pore formation ; ion selectivity ; lysine modification ; diethylpyrocarbonate ; trinitrobenzenesulfonic acid ; Staphylococcus aureus
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Summary Staphylococcus aureaus α-toxin opens an ion channel in planar phospholipid bilayers which is selective for anions over cations, supposedly because of the presence of positively charged groups along the ion pathway. To remove some positive charges of this protein toxin, we chemically modified part of its lysine residues either with diethylpyrocarbonate, followed by histidine regeneration with hydroxylamine, or with trinitrobenzenesulfonic acid. The extent of chemical modification can be followed accurately by native polyacrylamide gel electrophoresis and isoelectric focusing. Ethoxyformilation of two to three lysine residues per toxin monomer does not impair hemolysis of rabbit red blood cells nor formation of pores in model membranes. It reduces the conductance and the anion selectivity of the channel and changes the shape of its current-voltage characteristic. This indicates that positively charged lysine residues are actually important in determining the electrical properties of the pore. Ethoxyformilation of channels preassembled in planar bilayers produces the same changes as modification of toxin monomers before channel formation. Furthermore, it can be performed by adding diethylpyrocarbonate on either side of the bilayer. This suggests that the lysine residues relevant for the electrical properties of the pore are located inside its lumen where they can be reached by diethylpyrocarbonate diffusing from either entrance of the channel.
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  • 3
    ISSN: 1432-1424
    Keywords: α-toxin ; membrane damage ; hemolysis ; histidine modification ; diethylpyrocarbonate ; Staphylococcus aureus
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Summary Staphylococcus aureus α-toxin causes cell damage by forming an amphiphilic hexamer that inserts into the cell membrane and generates a hydrophilic pore. To investigate the role of the three histidine residues of this toxin we modified them with diethylpyrocarbonate, obtaining N-carbethoxy-histidine whose appearance may be followed spectrophotometrically. Despite the statistical nature of random chemical modification, it was possible to establish that modification of any one of the three histidines was enough to impair α-toxin activity on red blood cells and platelets. Two out of three histidines were essential for the interaction of the toxin with model membranes such as lipid vesicles and planar bilayers. Loss of lytic activity in both natural and model membranes was due both to defective binding and to defective oligomerization. When α-toxin hexamers inserted into lipid vesicles were assayed for chemical modifiability two histidines per monomer were found to be protected from diethylpyrocarbonate modification, whereas only one was protected after delipidation of the oligomer with a detergent. A possible model for the role of each histidine in the monomer is presented.
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  • 4
    Publication Date: 2012-06-23
    Description: Ecosystem respiration is the biotic conversion of organic carbon to carbon dioxide by all of the organisms in an ecosystem, including both consumers and primary producers. Respiration exhibits an exponential temperature dependence at the subcellular and individual levels, but at the ecosystem level respiration can be modified by many variables including community abundance and biomass, which vary substantially among ecosystems. Despite its importance for predicting the responses of the biosphere to climate change, it is as yet unknown whether the temperature dependence of ecosystem respiration varies systematically between aquatic and terrestrial environments. Here we use the largest database of respiratory measurements yet compiled to show that the sensitivity of ecosystem respiration to seasonal changes in temperature is remarkably similar for diverse environments encompassing lakes, rivers, estuaries, the open ocean and forested and non-forested terrestrial ecosystems, with an average activation energy similar to that of the respiratory complex (approximately 0.65 electronvolts (eV)). By contrast, annual ecosystem respiration shows a substantially greater temperature dependence across aquatic (approximately 0.65 eV) versus terrestrial ecosystems (approximately 0.32 eV) that span broad geographic gradients in temperature. Using a model derived from metabolic theory, these findings can be reconciled by similarities in the biochemical kinetics of metabolism at the subcellular level, and fundamental differences in the importance of other variables besides temperature-such as primary productivity and allochthonous carbon inputs-on the structure of aquatic and terrestrial biota at the community level.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Yvon-Durocher, Gabriel -- Caffrey, Jane M -- Cescatti, Alessandro -- Dossena, Matteo -- del Giorgio, Paul -- Gasol, Josep M -- Montoya, Jose M -- Pumpanen, Jukka -- Staehr, Peter A -- Trimmer, Mark -- Woodward, Guy -- Allen, Andrew P -- England -- Nature. 2012 Jul 26;487(7408):472-6. doi: 10.1038/nature11205.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉School of Biological & Chemical Sciences, Queen Mary University of London, London E1 4NS, UK. g.yvon-durocher@exeter.ac.uk〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22722862" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biomass ; Biota ; Carbon/*metabolism ; Carbon Dioxide/*metabolism ; Cell Respiration ; Data Collection ; *Ecosystem ; *Global Warming ; Humans ; Kinetics ; Lakes ; Marine Biology ; *Oxygen Consumption ; Photosynthesis ; Rivers ; Seasons ; Seawater ; *Temperature ; Time Factors ; Trees/metabolism
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 5
    Publication Date: 2014-09-26
    Description: The response of the terrestrial carbon cycle to climate change is among the largest uncertainties affecting future climate change projections. The feedback between the terrestrial carbon cycle and climate is partly determined by changes in the turnover time of carbon in land ecosystems, which in turn is an ecosystem property that emerges from the interplay between climate, soil and vegetation type. Here we present a global, spatially explicit and observation-based assessment of whole-ecosystem carbon turnover times that combines new estimates of vegetation and soil organic carbon stocks and fluxes. We find that the overall mean global carbon turnover time is 23(+7)(-4) years (95 per cent confidence interval). On average, carbon resides in the vegetation and soil near the Equator for a shorter time than at latitudes north of 75 degrees north (mean turnover times of 15 and 255 years, respectively). We identify a clear dependence of the turnover time on temperature, as expected from our present understanding of temperature controls on ecosystem dynamics. Surprisingly, our analysis also reveals a similarly strong association between turnover time and precipitation. Moreover, we find that the ecosystem carbon turnover times simulated by state-of-the-art coupled climate/carbon-cycle models vary widely and that numerical simulations, on average, tend to underestimate the global carbon turnover time by 36 per cent. The models show stronger spatial relationships with temperature than do observation-based estimates, but generally do not reproduce the strong relationships with precipitation and predict faster carbon turnover in many semi-arid regions. Our findings suggest that future climate/carbon-cycle feedbacks may depend more strongly on changes in the hydrological cycle than is expected at present and is considered in Earth system models.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Carvalhais, Nuno -- Forkel, Matthias -- Khomik, Myroslava -- Bellarby, Jessica -- Jung, Martin -- Migliavacca, Mirco -- Mu, Mingquan -- Saatchi, Sassan -- Santoro, Maurizio -- Thurner, Martin -- Weber, Ulrich -- Ahrens, Bernhard -- Beer, Christian -- Cescatti, Alessandro -- Randerson, James T -- Reichstein, Markus -- England -- Nature. 2014 Oct 9;514(7521):213-7. doi: 10.1038/nature13731. Epub 2014 Sep 24.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉1] Max Planck Institute for Biogeochemistry, Hans Knoll Strasse 10, 07745 Jena, Germany [2] Departamento de Ciencias e Engenharia do Ambiente, DCEA, Faculdade de Ciencias e Tecnologia, FCT, Universidade Nova de Lisboa, 2829-516 Caparica, Portugal. ; Max Planck Institute for Biogeochemistry, Hans Knoll Strasse 10, 07745 Jena, Germany. ; 1] Max Planck Institute for Biogeochemistry, Hans Knoll Strasse 10, 07745 Jena, Germany [2] School of Geography and Earth Sciences, McMaster University, Hamilton, Ontario L8S 4K1, Canada. ; 1] Institute of Biological and Environmental Sciences, School of Biological Sciences, University of Aberdeen, Aberdeen AB24 3UU, UK [2] Lancaster Environment Centre, Lancaster University, Bailrigg, Lancaster LA1 4YQ, UK. ; 1] Max Planck Institute for Biogeochemistry, Hans Knoll Strasse 10, 07745 Jena, Germany [2] Remote Sensing of Environmental Dynamics Lab, DISAT, University of Milano-Bicocca, Piazza della Scienza 1, 20126 Milan, Italy. ; Department of Earth System Science, University of California Irvine, Irvine, California 92697, USA. ; Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California 91109, USA. ; Gamma Remote Sensing, Worbstrasse 225, 3073 Gumligen, Switzerland. ; 1] Max Planck Institute for Biogeochemistry, Hans Knoll Strasse 10, 07745 Jena, Germany [2] Department of Applied Environmental Science and Bolin Centre for Climate Research, Stockholm University, Svante Arrhenius vag 8, 10691 Stockholm, Sweden. ; European Commission, Joint Research Centre, Institute for Environment and Sustainability, Climate Risk Management Unit, Via E. Fermi, 2749, I-21027 Ispra, Italy.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25252980" target="_blank"〉PubMed〈/a〉
    Keywords: Biomass ; Carbon/*metabolism ; *Carbon Cycle ; *Climate ; *Ecosystem ; Feedback ; Hydrology ; Models, Theoretical ; Plants/metabolism ; Rain ; Soil/chemistry ; Temperature ; Time Factors ; Water Cycle
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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