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  • 1
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 1989-04-07
    Description: An algorithm and a computer program have been prepared for determining RNA secondary structures within any prescribed increment of the computed global minimum free energy. The mathematical problem of determining how well defined a minimum energy folding is can now be solved. All predicted base pairs that can participate in suboptimal structures may be displayed and analyzed graphically. Representative suboptimal foldings are generated by selecting these base pairs one at a time and computing the best foldings that contain them. A distance criterion that ensures that no two structures are "too close" is used to avoid multiple generation of similar structures. Thermodynamic parameters, including free-energy increments for single-base stacking at the ends of helices and for terminal mismatched pairs in interior and hairpin loops, are incorporated into the underlying folding model of the above algorithm.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Zuker, M -- New York, N.Y. -- Science. 1989 Apr 7;244(4900):48-52.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Division of Biological Sciences, National Research Council of Canada, Ottawa, Ontario.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/2468181" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Base Sequence ; Molecular Sequence Data ; *Nucleic Acid Conformation ; *Rna
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 2
    Publication Date: 1994-07-08
    Description: A tendency for exons to correspond to discrete units of protein structure in protein-coding genes of ancient origin would provide clear evidence in favor of the exon theory of genes, which proposes that split genes arose not by insertion of introns into unsplit genes, but from combinations of primordial mini-genes (exons) separated by spacers (introns). Although putative examples of such correspondence have strongly influenced previous debate on the origin of introns, a general correspondence has not been rigorously proved. Objective methods for detecting correspondences were developed and applied to four examples that have been cited previously as evidence of the exon theory of genes. No significant correspondence between exons and units of protein structure was detected, suggesting that the putative correspondence does not exist and that the exon theory of genes is untenable.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Stoltzfus, A -- Spencer, D F -- Zuker, M -- Logsdon, J M Jr -- Doolittle, W F -- GM-35087/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 1994 Jul 8;265(5169):202-7.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biochemistry, Dalhousie University, Halifax, Nova Scotia, Canada.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/8023140" target="_blank"〉PubMed〈/a〉
    Keywords: Alcohol Dehydrogenase/chemistry/genetics ; Animals ; Biological Evolution ; *Exons ; *Genes ; Globins/chemistry/genetics ; *Introns ; *Protein Conformation ; Protein Structure, Secondary ; Pyruvate Kinase/chemistry/genetics ; Triose-Phosphate Isomerase/chemistry/genetics
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
    Location Call Number Expected Availability
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