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  • 1
    Publication Date: 2014-08-30
    Description: Author(s): K. Kimura, S. Nakatsuji, and T. Kimura Several pyrochlore antiferromagnets are being considered as candidate materials where geometrical frustration may lead to quantum spin-liquid states. In a “breathing” pyrochlore lattice systems (see PRL 110, 097203 (2013)) the spins occupy the vertices of alternating tetrahedra of different size that are characterized by different exchange parameters J and J ′ . [Phys. Rev. B 90, 060414] Published Fri Aug 29, 2014
    Keywords: Magnetism
    Print ISSN: 1098-0121
    Electronic ISSN: 1095-3795
    Topics: Physics
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  • 2
    Publication Date: 2014-05-03
    Description: PINK1 (PTEN induced putative kinase 1) and PARKIN (also known as PARK2) have been identified as the causal genes responsible for hereditary recessive early-onset Parkinsonism. PINK1 is a Ser/Thr kinase that specifically accumulates on depolarized mitochondria, whereas parkin is an E3 ubiquitin ligase that catalyses ubiquitin transfer to mitochondrial substrates. PINK1 acts as an upstream factor for parkin and is essential both for the activation of latent E3 parkin activity and for recruiting parkin onto depolarized mitochondria. Recently, mechanistic insights into mitochondrial quality control mediated by PINK1 and parkin have been revealed, and PINK1-dependent phosphorylation of parkin has been reported. However, the requirement of PINK1 for parkin activation was not bypassed by phosphomimetic parkin mutation, and how PINK1 accelerates the E3 activity of parkin on damaged mitochondria is still obscure. Here we report that ubiquitin is the genuine substrate of PINK1. PINK1 phosphorylated ubiquitin at Ser 65 both in vitro and in cells, and a Ser 65 phosphopeptide derived from endogenous ubiquitin was only detected in cells in the presence of PINK1 and following a decrease in mitochondrial membrane potential. Unexpectedly, phosphomimetic ubiquitin bypassed PINK1-dependent activation of a phosphomimetic parkin mutant in cells. Furthermore, phosphomimetic ubiquitin accelerates discharge of the thioester conjugate formed by UBCH7 (also known as UBE2L3) and ubiquitin (UBCH7 approximately ubiquitin) in the presence of parkin in vitro, indicating that it acts allosterically. The phosphorylation-dependent interaction between ubiquitin and parkin suggests that phosphorylated ubiquitin unlocks autoinhibition of the catalytic cysteine. Our results show that PINK1-dependent phosphorylation of both parkin and ubiquitin is sufficient for full activation of parkin E3 activity. These findings demonstrate that phosphorylated ubiquitin is a parkin activator.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Koyano, Fumika -- Okatsu, Kei -- Kosako, Hidetaka -- Tamura, Yasushi -- Go, Etsu -- Kimura, Mayumi -- Kimura, Yoko -- Tsuchiya, Hikaru -- Yoshihara, Hidehito -- Hirokawa, Takatsugu -- Endo, Toshiya -- Fon, Edward A -- Trempe, Jean-Francois -- Saeki, Yasushi -- Tanaka, Keiji -- Matsuda, Noriyuki -- Canadian Institutes of Health Research/Canada -- England -- Nature. 2014 Jun 5;510(7503):162-6. doi: 10.1038/nature13392. Epub 2014 Jun 4.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉1] Laboratory of Protein Metabolism, Tokyo Metropolitan Institute of Medical Science, Setagaya-ku, Tokyo 156-8506, Japan [2] Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba 277-8561, Japan. ; Division of Cell Signaling, Fujii Memorial Institute of Medical Sciences, The University of Tokushima, Tokushima 770-8503, Japan. ; Research Center for Materials Science, Nagoya University, Nagoya, Aichi 464-8602, Japan. ; Laboratory of Protein Metabolism, Tokyo Metropolitan Institute of Medical Science, Setagaya-ku, Tokyo 156-8506, Japan. ; 1] Laboratory of Protein Metabolism, Tokyo Metropolitan Institute of Medical Science, Setagaya-ku, Tokyo 156-8506, Japan [2] Graduate School of Agriculture, Shizuoka University, 836 Ohya, Shizuoka 422-8529, Japan. ; Molecular Profiling Research Center for Drug Discovery, National Institute of Advanced Industrial Science and Technology, 2-4-7 Aomi, Koto-ku, Tokyo 135-0064, Japan. ; 1] JST-CREST/Department of Chemistry, Graduate School of Science, Nagoya University, Chikusa-ku, Nagoya 464-8602, Japan [2] JST-CREST/Faculty of Life Sciences, Kyoto Sangyo University, Kamigamo-motoyama, Kita-ku, Kyoto 603-8555, Japan. ; McGill Parkinson Program, Department of Neurology and Neurosurgery, Montreal Neurological Institute and Hospital, McGill University, Montreal, Quebec H3A 2B4, Canada. ; Department of Pharmacology & Therapeutics, McGill University, Montreal, Quebec H3G 1Y6, Canada. ; 1] Laboratory of Protein Metabolism, Tokyo Metropolitan Institute of Medical Science, Setagaya-ku, Tokyo 156-8506, Japan [2] Protein Metabolism Project, Tokyo Metropolitan Institute of Medical Science, Setagaya-ku, Tokyo 156-8506, Japan.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24784582" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Enzyme Activation ; Fibroblasts ; HeLa Cells ; Humans ; Membrane Potential, Mitochondrial ; Mice ; Mitochondria/metabolism ; Mutation/genetics ; Parkinson Disease ; Phosphorylation ; Phosphoserine/metabolism ; Protein Kinases/*metabolism ; Ubiquitin/chemistry/*metabolism ; Ubiquitin-Protein Ligases/genetics/*metabolism ; Ubiquitination
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 3
    Publication Date: 2018-04-19
    Description: Author(s): K. Kimura, M. Toyoda, P. Babkevich, K. Yamauchi, M. Sera, V. Nassif, H. M. Rønnow, and T. Kimura A material with broken space-inversion and time-reversal symmetries can exhibit symmetry-dependent unique phenomena such as the magnetoelectric effect. Ferroic order of magnetic quadrupoles fulfills this symmetry condition. The authors report here the discovery of ferroic magnetic quadrupole order and its magnetoelectric activity in the novel compound Pb(TiO)Cu 4 (PO 4 ) 4 , which is in contrast with isostructural Ba(TiO)Cu 4 (PO 4 ) 4 and Sr(TiO)Cu 4 (PO 4 ) 4 in exhibiting antiferroic quadrupole order. Their first-principles calculations reveal that s 2 electrons in Pb 2 + ions alter specific magnetic interactions and consequently switch the quadrupole order from antiferroic to ferroic. This result provides not only an opportunity to explore magnetoelectric phenomena arising from magnetic quadrupoles, but also a useful way of fine-tuning magnetic interactions with s 2 electrons. [Phys. Rev. B 97, 134418] Published Wed Apr 18, 2018
    Keywords: Magnetism
    Print ISSN: 1098-0121
    Electronic ISSN: 1095-3795
    Topics: Physics
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  • 4
    Publication Date: 2017-12-27
    Description: Author(s): P. Babkevich, L. Testa, K. Kimura, T. Kimura, G. S. Tucker, B. Roessli, and H. M. Rønnow The antiferromagnetic compound Ba ( TiO ) Cu 4 ( PO 4 ) 4 contains square cupola of corner-sharing CuO 4 plaquettes, which were proposed to form effective quadrupolar order. To identify the magnetic structure, we have performed spherical neutron polarimetry measurements. Based on symmetry analysis and careful ... [Phys. Rev. B 96, 214436] Published Tue Dec 26, 2017
    Keywords: Magnetism
    Print ISSN: 1098-0121
    Electronic ISSN: 1095-3795
    Topics: Physics
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  • 5
    Electronic Resource
    Electronic Resource
    Chichester : Wiley-Blackwell
    Biological Mass Spectrometry 20 (1991), S. 493-497 
    ISSN: 1052-9306
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A sensitive and rapid method to analyse fuel components in blood from rats exposed to kerosene or light oil vapour was developed by making use of capillary gas chromatography/mass spectrometry. The aliphatic hydrocarbons with carbon numbers 8-10 and aromatics such as toluene, xylene, 3- and 4-ethyltoluene and trimethylbenzenes were clearly detected in blood from rats exposed to kerosene or light oil vapour, using the head-space method combined with the salting-out technique. The concentration ratio of pseudocumene to toluene in blood exposed to light oil was higher than that in the case of exposure to kerosene. The lower limits of detection were 50 pg and 1 ng in toluene and pseudocumene, respectively. Our suggestion is that this method is useful in forensic investigations to detect fuel components in blood and for the purposes of differentiating kerosene and light oil in blood tissues.
    Additional Material: 2 Ill.
    Type of Medium: Electronic Resource
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  • 6
    Electronic Resource
    Electronic Resource
    Chichester : Wiley-Blackwell
    Organic Magnetic Resonance 9 (1977), S. 116-117 
    ISSN: 0030-4921
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Aromatic solvent-induced shifts (ASIS) in 19F n.m.r. spectra of several organic fluoro compounds have been determined in several solvents. 19F n.m.r. signals of unsaturated fluoro compounds in C6F6 and C6H6 show excess high field shifts corresponding to the term σc (solvent shift caused by chemical interactions). The mechanism of this shift is discussed in connection with the presence of an F-π interaction. A thermal study also supports this idea.
    Additional Material: 2 Ill.
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  • 7
    ISSN: 0030-493X
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Molecular secondary ion mass spectra of three pentasaccharides, viridopentaoses A, B and C, using various matrices, are discussed. The appearance of the molecular ion species is dependent upon the relative proton affinities between the sample and the organic matrix material. However, the presence of sodium ion, rather than proton, also greatly influences the appearance of the molecular ion species. The glycosidic linkages are mainly cleaved between the glycosidic oxygen atom and the anomeric carbon atom to give informative sugar sequence ions. These fragmentations have been confirmed by the linked scanning technique (B/E).
    Additional Material: 5 Ill.
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  • 8
    Electronic Resource
    Electronic Resource
    Chichester [u.a.] : Wiley-Blackwell
    Journal of Raman Spectroscopy 18 (1987), S. 47-52 
    ISSN: 0377-0486
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The effect of temperature on the peak positions, the isotropic and reorientational band widths and the depolarization ratios of the Raman bands for the totally symmetric vibrations of CHCl3, CH2Cl2, CH2Br2, CH3Br, CH3I and CD3I has been measured in the liquid state. The isotropic band width for a C—X stretching vibration decreases with increasing temperature for molecule with only one C—X bond, whereas it increases for a molecule with two or three equivalent C—X bonds. The isotropic band width for the deformation vibrations decreases with increase in temperature. For all the bands, the depolarization ratios depend only slightly on temperature.
    Additional Material: 2 Ill.
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  • 9
    Electronic Resource
    Electronic Resource
    Chichester [u.a.] : Wiley-Blackwell
    Journal of Raman Spectroscopy 22 (1991), S. 233-236 
    ISSN: 0377-0486
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Raman spectra were measured for five crystals containing N-deuterated histidinium and their C2-deuterated analogues. The spectra showed strong bands assignable to the C4=C5 stretching mode, ν(C4=C5), and the Nτ—C2—Nπ symmetric stretching mode, ν(NτC2Nπ), characteristic of the N-deuterated imidazolium ring. By comparison with the crystal structures, the ν(C4=C5) and ν(NτC2Nπ) frequencies are found to increase linearly with increase of the absolute value of the Cα—Cβ—C4=C5 torsional angle (χ2, 1), which determines the ring orientation relative to the amino acid backbone. Exceptionally, the ν(NτC2Nπ) frequency of the C2-deuterated imidazolium ring does not depend on the conformation but shows a correlation with the N—D stretching frequency of the ring, indicating that ν(NτC2Nπ) becomes a marker of hydrogen-bonding strength when the imidazolium ring is deuterated at C2. These marker bands may be useful in studying the conformation and hydrogen-bonding states of histidine residues in proteins and peptides.
    Additional Material: 4 Ill.
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  • 10
    Electronic Resource
    Electronic Resource
    Chichester [u.a.] : Wiley-Blackwell
    Journal of Raman Spectroscopy 8 (1979), S. 125-132 
    ISSN: 0377-0486
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Polarized Raman measurements have been made for the totally symmetric vibration bands of a series of halogen-substituted methanes in the liquid state at room temperature. The effect of polarization mixing due to divergence was examined experimentally and eliminated. The observed systematic variations in depolarization ratio are discussed in connection with the bond polarizability theory.
    Additional Material: 6 Ill.
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