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  • geminivirus  (2)
  • 7209  (1)
  • Aged  (1)
  • 1
    ISSN: 1573-5028
    Keywords: DNA methylation ; geminivirus ; protoplasts ; tomato golden mosaic virus ; transfection
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The effects of methylation on plant viral DNA replication have been studied inNicotiana tabacum protoplasts transfected with DNA of the geminivirus tomato golden mosaic virus (TGMV). The transfected cells were also used to determine whether experimentally introduced methylation patterns are maintained in extrachromosomal viral DNA. Replacement of cytosine residues with 5-methylcytosine (m5C) reduced the amount of viral DNA which accumulated in transfected protoplasts. The reduction was observed whether m5C residues were substituted for cytosine residuesin vitro in either the viral strand or the complementary strand of double-stranded circular inoculum DNAs containing tandemly repeated copies of the A component of the TGMV genome. Both limited and extensive cytosine methylation of TGMV DNA sequencesin vitro was not propagated in progeny viral DNA. The absence of detectable maintenance-type methylation of the transfecting TGMV DNA sequences may be related to the lack of methylation observed in double-stranded TGMV DNA isolated from infected plants.
    Type of Medium: Electronic Resource
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  • 2
    ISSN: 1573-5028
    Keywords: DNA methylation ; 5-methylcytosine ; uracil excision ; DNA mismatch repair ; geminivirus
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract We have compared the fate of U · G mispairs or analogous T · G mispairs in DNA heteroduplexes transfected into tobacco protoplasts. The heteroduplex DNA consisted of tomato golden mosaic virus DNA sequences in theEscherichia coli vectors pUC118 or pUC119. After transfection, the mismatched U residues were lost with an efficiency of greater than 95%, probably as a result of the uracil-DNA glycosylase pathway for excision of U residues in any sequence context. In contrast to the preferential removal of the mispaired U residues, biased removal of T residues from analogous heteroduplexes was not seen in the transfected plant cells. Also, we investigated the effect of extensively methylating one strand of the heteroduplex DNA used for transfection. Surprisingly, such methylation resulted in highly biased loss of the mismatched base from the 5-methylcytosine-rich strand of T · G-containing heteroduplexes.
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  • 3
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    In:  J. Geophys. Res., Oslo, Norsk Polarinstitutt, vol. 111, no. B8, pp. 1-10, pp. B08303, (ISSN: 1340-4202)
    Publication Date: 2006
    Keywords: Earthquake ; China ; Source ; Fracture ; Seismology ; JGR ; 7209 ; Seismology: ; Earthquake ; dynamics ; 8118 ; Tectonophysics: ; Dynamics ; and ; mechanics ; of ; faulting ; 8123 ; Tectonophysics: ; Dynamics: ; seismotectonics
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  • 4
    Publication Date: 2008-02-12
    Description: Cells with loss of BRCA2 function are defective in homologous recombination (HR) and are highly sensitive to inhibitors of poly(ADP-ribose) polymerase (PARP), which provides the basis for a new therapeutic approach. Here we show that resistance to PARP inhibition can be acquired by deletion of a mutation in BRCA2. We derived PARP-inhibitor-resistant (PIR) clones from the human CAPAN1 pancreatic cancer cell line, which carries the protein-truncating c.6174delT frameshift mutation. PIR clones could form DNA-damage-induced RAD51 nuclear foci and were able to limit genotoxin-induced genomic instability, both hallmarks of a competent HR pathway. New BRCA2 isoforms were expressed in the resistant lines as a result of intragenic deletion of the c.6174delT mutation and restoration of the open reading frame (ORF). Reconstitution of BRCA2-deficient cells with these revertant BRCA2 alleles rescued PARP inhibitor sensitivity and HR deficiency. Most of the deletions in BRCA2 were associated with small tracts of homology, and possibly arose from error-prone repair caused by BRCA2 deficiency. Similar ORF-restoring mutations were present in carboplatin-resistant ovarian tumours from c.6174delT mutation carriers. These observations have implications for understanding drug resistance in BRCA mutation carriers as well as in defining functionally important domains within BRCA2.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Edwards, Stacey L -- Brough, Rachel -- Lord, Christopher J -- Natrajan, Rachael -- Vatcheva, Radost -- Levine, Douglas A -- Boyd, Jeff -- Reis-Filho, Jorge S -- Ashworth, Alan -- A8363/Cancer Research UK/United Kingdom -- England -- Nature. 2008 Feb 28;451(7182):1111-5. doi: 10.1038/nature06548. Epub 2008 Feb 10.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉The Breakthrough Breast Cancer Research Centre, The Institute of Cancer Research, Fulham Road, London SW3 6JB, UK.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18264088" target="_blank"〉PubMed〈/a〉
    Keywords: Aged ; Alleles ; Amino Acid Sequence ; BRCA2 Protein/deficiency/genetics ; Base Sequence ; Carboplatin/pharmacology ; Cell Line, Tumor ; Chromosome Aberrations/chemically induced ; Drug Resistance, Neoplasm/*drug effects/*genetics ; Female ; Fluorobenzenes/pharmacology ; Gene Expression Regulation, Neoplastic ; *Genes, BRCA2 ; Humans ; Middle Aged ; Mitomycin/pharmacology ; Molecular Sequence Data ; Mutation/genetics ; Open Reading Frames/genetics ; Ovarian Neoplasms/drug therapy/genetics ; Pancreatic Neoplasms/drug therapy/genetics/pathology ; Phthalazines/pharmacology ; Poly(ADP-ribose) Polymerase Inhibitors ; Recombination, Genetic/genetics ; Sequence Deletion/*genetics
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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