Publication Date:
1996-09-13
Description:
The solution structure of a human immunodeficiency virus type-1 (HIV-1) Rev peptide bound to stem-loop IIB of the Rev response element (RRE) RNA was solved by nuclear magnetic resonance spectroscopy. The Rev peptide has an alpha-helical conformation and binds in the major groove of the RNA near a purine-rich internal loop. Several arginine side chains make base-specific contacts, and an asparagine residue contacts a G.A base pair. The phosphate backbone adjacent to a G.G base pair adopts an unusual structure that allows the peptide to access a widened major groove. The structure formed by the two purine-purine base pairs of the RRE creates a distinctive binding pocket that the peptide can use for specific recognition.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Battiste, J L -- Mao, H -- Rao, N S -- Tan, R -- Muhandiram, D R -- Kay, L E -- Frankel, A D -- Williamson, J R -- GM-08344/GM/NIGMS NIH HHS/ -- GM-39589/GM/NIGMS NIH HHS/ -- GM-53320/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 1996 Sep 13;273(5281):1547-51.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/8703216" target="_blank"〉PubMed〈/a〉
Keywords:
Amino Acid Sequence
;
Arginine/chemistry
;
Asparagine/chemistry
;
Base Composition
;
Base Sequence
;
*DNA-Binding Proteins
;
Fungal Proteins/chemistry
;
Gene Products, rev/*chemistry/*metabolism
;
*Genes, env
;
HIV-1/*chemistry
;
Hydrogen Bonding
;
Magnetic Resonance Spectroscopy
;
Models, Molecular
;
Molecular Sequence Data
;
*Nucleic Acid Conformation
;
Protein Kinases/chemistry
;
*Protein Structure, Secondary
;
RNA, Viral/*chemistry/genetics/metabolism
;
*Saccharomyces cerevisiae Proteins
;
Threonine/chemistry
;
rev Gene Products, Human Immunodeficiency Virus
Print ISSN:
0036-8075
Electronic ISSN:
1095-9203
Topics:
Biology
,
Chemistry and Pharmacology
,
Computer Science
,
Medicine
,
Natural Sciences in General
,
Physics
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