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  • 1
    Electronic Resource
    Electronic Resource
    New York : Wiley-Blackwell
    Biopolymers 19 (1980), S. 1475-1489 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: An approximate analytic expression for the translational friction coefficient of a toroid modeled as a continuous shell of frictional elements is derived using the Kirkwood approximation. The accuracy of this expression was determined by comparing the friction coefficients predicted by it to those predicted by extrapolated shell-model calculations using the modified Oseen tensor. To show that these calculations do indeed yield the correct friction coefficients, actual translational friction coefficients were determined by observing settling rates of macroscopic model rings or toroids in a high-viscosity silicone fluid. Our conclusion is that the approximate expression yields friction coefficients that are about 1.5-3% low for finite rings. For thin rings, a comparison is also made with the exact result of Yamakawa and Yamaki [J. Chem. Phys. 57, 1572 (1972); 58, 2049 (1973)] for the translational friction of plane polygonal rings. This comparison shows that the approximate expression yields results which are low by 2-3% unless the rings are extremely thin, in which case the error is larger. In the limit of an infinitely thin ring the approximate expression reduces to the Kirkwood result [J. Polym. Sci. 12, 1 (1954)], which is low by 8.3%. We discuss briefly how this work may be useful in determining the structure of DNA compacted by various solvent-electrolyte systems and polyamines.
    Additional Material: 5 Ill.
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  • 2
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The variable-temperature proton nmr spectra of the oligoribonucleotides in the series CpApX and the series ApGpX, X = A, G, C, U, together with the parent dimers CpA and ApG have been measured. A complete analysis of all the nonexchangeable base proton resonances and ribose H-1′ proton resonances was made. The presence of trends in the shielding abilities of the various bases at both the nearest-neighbor and next-nearest-neighbor positions were identified. The observed shieldings could be used to predict the chemical shifts of protons in related systems. Based on the empirical results from ribodinucleoside monophosphates, the temperature-dependent behavior of the J1′2′ coupling constants of the triribonucleotides suggested that the compounds in the CpApX series stacked from the 5′-end to the 3′-end, while those in the ApGpX series stacked from the 3′-end to the 5′-end.
    Additional Material: 7 Ill.
    Type of Medium: Electronic Resource
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  • 3
    Electronic Resource
    Electronic Resource
    New York : Wiley-Blackwell
    Biopolymers 28 (1989), S. 1115-1127 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The complete assignment of resonances in the proton nmr spectrum of the 1-34 amino acid fragment of human parathyroid hormone [hPTH(1-34)], determined using a combination of one- and two-dimensional nmr techniques at 500 MHz, is described. In particular, homonuclear Hartmann-Hahn experiments, recorded in H2O and D2O, are used to resolve ambiguities in the connectivities between the highly overlapped resonances in the aliphatic region of the spectrum. One-dimensional multiple quantum filtering experiments are used to identify serine and phenylalanine spin systems. Analyses of the through-bond and through-space connectivities in the αH-NH fingerprint regions of the correlated spectroscopy (COSY) and nuclear Overhauser effect spectroscopy (NOESY) spectra lead to the assignment of resonances to specific amino acid residues in the polypeptide. Examination of the observed NOE cross peaks indicates that hPTH(1-34) has no detectable secondary structural elements in aqueous solution.
    Additional Material: 7 Ill.
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  • 4
    Electronic Resource
    Electronic Resource
    New York : Wiley-Blackwell
    Biopolymers 38 (1996), S. 235-250 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The formation of a topologically closed DNA loop is important in many biological processes, including the regulation of transcription, recombination, and replication. Modeling DNA as an isotropic elastic rod, we use finite element analysis to show that the dependence of the twist (ΔTw) and the writhe (Wr) upon the linking number deficit (ΔLk) is strongly influenced by intrinsic bends. We determine how the geometry of a DNA loop changes as a function of the number of uniformly spaced coplanar 20° bends, oriented so as to open toward the center of the loop. We also calculate the geometry of DNA rods that are smoothly bent to the same extent. The response of both ΔTw and Wr of a bent DNA to changes in ΔLk falls into one of three categories, depending upon the number of bends. For a single bend of 20°, Wr increases monotonically with ΔLk and the change in ΔTw with distance is constant along the entire DNA axis. For two to ten 20° bends, Wr passes first through a local maximum, then through a local minimum, and finally increases monotonically as ΔLk increases. For eleven to eighteen 20° bends, Wr again varies monotonically with ΔLk. For all numbers of bends greater than two, the ΔTw per unit length depends upon the distribution of intrinsic bends, being constant between any two adjoining bends but varying with their position relative to the cut location. Accompanying these ΔLk-associated changes in Wr and ΔTw per unit length are characteristic changes in geometry that are specific for each category. The results of these calculations raise the possibility that intrinsic bends can serve as a control factor in the biological functions associated with loop formation in DNA. © 1996 John Wiley & Sons, Inc.
    Additional Material: 11 Ill.
    Type of Medium: Electronic Resource
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  • 5
    Electronic Resource
    Electronic Resource
    New York : Wiley-Blackwell
    Biopolymers 14 (1975), S. 1309-1312 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Additional Material: 1 Ill.
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  • 6
    Electronic Resource
    Electronic Resource
    Weinheim : Wiley-Blackwell
    Berichte der deutschen chemischen Gesellschaft 101 (1968), S. 1729-1735 
    ISSN: 0009-2940
    Keywords: Chemistry ; Inorganic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Im geschwindigkeitsbestimmenden Schritt der Autoxydation in Methanol/Methylat reagiert Sauerstoff mit dem Monoanion von Hydrazobenzol. In stark basischem Dimethylsulfoxid/tert.-Butylalkohol kann ein Ablauf über das Dianion und Radikalanion des Hydrazobenzols erzwungen werden; dabei entsteht Kaliumhyperoxid (KO2). Im Licht dieser Ergebnisse werden die Autoxydation von Anilin und Benzhydrol diskutiert.
    Additional Material: 2 Ill.
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  • 7
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    Helvetica Chimica Acta 69 (1986), S. 803-805 
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The reduction of δ-hydroxy-β-ketoesters 1 was investigated with three different reducing agents. In several instances, high selectivity in favor of syn-1,3-diols was observed.
    Additional Material: 2 Tab.
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  • 8
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 18 (1980), S. 1405-1413 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Semiempirical MO calculations of the self-consistent charge and configuration (SCCC) method are reported for the acetonitrile-metal solvated species (CH3CN)xMn+, where M = Be2+ and Mg2+. Comparison of the delocalization energies for various chemical structures x = 1, 2, 3, 4, 6 leads to an expectation of a tetrahedral structure for the Be2+ species and an octahedral structure for the Mg2+ species. The electronic nature of the donor-acceptor interaction is also discussed.
    Additional Material: 8 Tab.
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  • 9
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 117-127 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab-initio molecular orbital (MO) calculations on the model peptide, N-methylacetamide (NMA), protonated N-methylacetamide (p-NMA), and two natural dipeptides, glyclyglycine (Gly-Gly) and alanylalanine (Ala-Ala), are reported. Calculations at the STO-3G. 3-21G. and 4-31 G levels account for the predominance of the trans conformation in globular proteins. By use of p-NMA as a model precursor, the formation of the peptide bond is studied by the methods of molecular quantum mechanics. These calculations lead to the conclusion that the trans conformation should predominate, in agreement with the crystal structural data on globular proteins. In order to reduce the amount of computer time required for what are evidently the first ab-initio MO calculations on natural dipeptides, force-field calculations have been employed to obtain the conformational potential energy maps.
    Additional Material: 11 Ill.
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  • 10
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The COLUMBUS program system is a collection of Fortran programs for performing general multireference single- and double-excitation configuration interaction (MRSDCI) wave function optimization based on the graphical unitary group approach. The program system also includes integral generation, SCF and MCSCF orbital optimization, integral transformation, and wave function analysis programs. The original program system was written in 1980 to 1981. Since that time, it has evolved into one of the most popular MRSDCI program systems used in the computational chemistry community. The discussion of this evolution will include the exploitation of efficient matrix-matrix and matrix-vector product computational kernels, the use of generally contracted symmetry-adapted orbital basis sets, general Hamiltonian diagonalization procedures, energy-based internal walk selection, flexible DRT specification, improved coupling-coefficient evaluation methods, coupled-pair functional and multireference CPF capabilities, and density matrix construction. The numerous versions of the program system that are maintained at different sites and on different computers are now in the process of being merged. The source code for this combined version will be made available to the computational chemistry community. The source code for a specific computer may be generated from the source code for another computer by a single pass through a simple filter utility that is included with the program system. The directly supported computers will initially include various models of VAX, Cray, FPS, IBM, CDC, and ETA machines with the addition of other machines shortly thereafter. The ongoing developments of the COLUMBUS system that are discussed include a new method for computing analytic energy gradients for MRSDCI wave functions. This effective-density-matrix based method avoids the “coupled perturbed MCSCF” solutions for each coordinate direction, avoids the transformation of any derivative-integral quantities from the AO to the MO basis, avoids the transformation of the coupling coefficients from the MO to the AO basis, allows a subset of the MCSCF doubly occupied orbitals to be frozen in the CI wave function, and allows the MRSDCI wave function to be generated from general reference CSFs that are not necessarily related to the MCSCF expansion CSFs.
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