ISSN:
0749-1581
Keywords:
Oligosaccharides
;
Conformation
;
Molecular modelling
;
Molecular dynamics
;
NOE distance mapping
;
Chemistry
;
Analytical Chemistry and Spectroscopy
Source:
Wiley InterScience Backfile Collection 1832-2000
Topics:
Chemistry and Pharmacology
Notes:
The solution conformation of two fucosyllactoses, Fucα(1 → 2)Galβ(1 → 4)Glcα,β and Galβ(1 → 4) [Fucα(1 → 3)] Glcα,β, and a difucosyllactose, Fucα(1 → 2)Galβ(1 → 4)[Fucα(1 → 3)]Glcα,β, were investigated in Me2SO-d6 with the use of distance mapping, molecular mechanics (MM) energy minimization and molecular dynamics (MD) simulations. The distance mapping procedure, which was based on rotating-frame NOE constraints involving C- and O-linked protons, and hydrogen bonding constraints, suggested the occurrence of two conformations for each of the fucose residues. The MM calculations resulted in two minima that were located reasonably near to the regions demarcated in the Θ, Ψ conformational space by distance mapping; 500 ps MD trajectories showed transitions between two conformations characterized by glycosidic angles Θ and Ψ that only deviated insignificantly from those found by the first two methods. No similar transitions were observed for the Galβ14Glc linkage.
Additional Material:
5 Ill.
Type of Medium:
Electronic Resource
URL:
http://dx.doi.org/10.1002/mrc.1260301319
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