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  • Oxford University Press  (2)
  • Springer Nature  (2)
  • 1
    Publication Date: 2014-11-29
    Description: Nature Physics 10, 918 (2014). doi:10.1038/nphys3135 Authors: Jason H. V. Nguyen, Paul Dyke, De Luo, Boris A. Malomed & Randall G. Hulet Solitons are localized wave disturbances that propagate without changing shape, a result of a nonlinear interaction that compensates for wave packet dispersion. Individual solitons may collide, but a defining feature is that they pass through one another and emerge from the collision unaltered in shape, amplitude, or velocity, but with a new trajectory reflecting a discontinuous jump. This remarkable property is mathematically a consequence of the underlying integrability of the one-dimensional (1D) equations, such as the nonlinear Schrödinger equation, that describe solitons in a variety of wave contexts, including matter waves. Here we explore the nature of soliton collisions using Bose–Einstein condensates of atoms with attractive interactions confined to a quasi-1D waveguide. Using real-time imaging, we show that a collision between solitons is a complex event that differs markedly depending on the relative phase between the solitons. By controlling the strength of the nonlinearity we shed light on these fundamental features of soliton collisional dynamics, and explore the implications of collisions in the proximity of the crossover between one and three dimensions where the loss of integrability may precipitate catastrophic collapse.
    Print ISSN: 1745-2473
    Electronic ISSN: 1745-2481
    Topics: Physics
    Published by Springer Nature
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  • 2
    Publication Date: 2016-09-18
    Description: In the past, the galactose-negative (Gal – ) phenotype was a key physiological character used to distinguish Saccharomyces bayanus from S. cerevisiae . In this work, we investigated the inactivation of GAL gene networks in S. bayanus , which is an S. uvarum/S. eubayanus hybrid, and in S. cerevisiae wine strains erroneously labelled ‘ S. bayanus ’. We made an inventory of their GAL genes using genomes that were either available publicly, re-sequenced by us, or assembled from public data and completed with targeted sequencing. In the S. eubayanus / S. uvarum CBS 380 T hybrid, the GAL/MEL network is composed of genes from both parents: from S. uvarum , an otherwise complete set that lacks GAL4 , and from S. eubayanus , a truncated version of GAL4 and an additional copy of GAL3 and GAL80 . Similarly, two different truncated GAL4 alleles were found in S. cerevisiae wine strains EC1118 and LalvinQA23. The lack of GAL4 activity in these strains was corrected by introducing a full-length copy of S. cerevisiae GAL4 on a CEN4/ARS plasmid. Transformation with this plasmid restored galactose utilisation in Gal – strains, and melibiose fermentation in strain CBS 380 T . The melibiose fermentation phenotype, formerly regarded as characteristic of S. uvarum , turned out to be widespread among Saccharomyces species.
    Print ISSN: 1567-1356
    Electronic ISSN: 1567-1364
    Topics: Biology
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  • 3
    Publication Date: 2014-06-10
    Description: While the past decade has seen great progress in mapping loci for common diseases, studying how these risk alleles lead to pathology remains a challenge. Age-related macular degeneration (AMD) affects 9 million older Americans, and is characterized by the loss of the retinal pigment epithelium (RPE). Although the closely linked genome-wide association studies ARMS2/HTRA1 genes, located at the chromosome 10q26 locus, are strongly associated with the risk of AMD, their downstream targets are unknown. Low population frequencies of risk alleles in tissue banks make it impractical to study their function in cells derived from autopsied tissue. Moreover, autopsy eyes from end-stage AMD patients, where age-related RPE atrophy and fibrosis are already present, cannot be used to determine how abnormal ARMS2/HTRA1 expression can initiate RPE pathology. Instead, induced pluripotent stem (iPS) cell-derived RPE from patients provides us with earlier stage AMD patient-specific cells and allows us to analyze the underlying mechanisms at this critical time point. An unbiased proteome screen of A2E-aged patient-specific iPS-derived RPE cell lines identified superoxide dismutase 2 (SOD2)-mediated antioxidative defense in the genetic allele's susceptibility of AMD. The AMD-associated risk haplotype (T-in/del-A) impairs the ability of the RPE to defend against aging-related oxidative stress. SOD2 defense is impaired in RPE homozygous for the risk haplotype (T-in/del-A; T-in/del-A), while the effect was less pronounced in RPE homozygous for the protective haplotype (G–Wt–G; G–Wt–G). ARMS2 / HTRA1 risk alleles decrease SOD2 defense, making RPE more susceptible to oxidative damage and thereby contributing to AMD pathogenesis.
    Print ISSN: 0964-6906
    Electronic ISSN: 1460-2083
    Topics: Biology , Medicine
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  • 4
    Publication Date: 1970-05-01
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
    Published by Springer Nature
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