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  • 11
    Electronic Resource
    Electronic Resource
    Chichester : Wiley-Blackwell
    Organic Magnetic Resonance 31 (1993), S. 1077-1084 
    ISSN: 0749-1581
    Keywords: 1H NMR ; 13C NMR ; Aminoglycosides ; Antibiotics ; Clindamycin ; Clinformational analysis ; Coupling constants ; Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: 1H NMR spectroscopy was used to determine the conformations of the aminoglycoside antibiotic N-demethylclindamycin and two of its cyclic derivatives. The conformational features of these systems were determined by consideration of vicinal coupling constants and, in some cases, nuclear Overhauser enhancement (NOE) effects. 1H and 13C chemical shifts are reported and compared with previous results for the related antibiotic lincomycin. The stability of the two cyclized derivatives in aqueous solution was examined. Both cyclizations involved formation of a 4-imidazolidinone ring. It was found that the ring system based on cyclization with formaldehyde was stable in aqueous solution, whereas that based on benzaldehyde was not.
    Additional Material: 8 Ill.
    Type of Medium: Electronic Resource
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  • 12
    Electronic Resource
    Electronic Resource
    Chichester : Wiley-Blackwell
    Organic Magnetic Resonance 27 (1989), S. 852-862 
    ISSN: 0749-1581
    Keywords: 13C NMR ; Bovine and porcine zinc insulin ; Spectral assignments ; Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Natural abundance 75 MHz 13C NMR spectral assignments are reported for bovine and porcine zinc insulin in solution. A large number of protein resonances are well resolved, and approximately 80% of these have been assigned to either residue types or to specific sites within the protein. Assignment techniques included consideration of free amino acid or peptide shifts pH studies and comparison of sequence and spectral differences between bovine and porcine insulin, in addition to the use of NMR relaxation times. The DEPT spectral editing technique was also found to be particularly valuable as an assignment aid. This technique allows subspectra containing only CH, CH2 or CH3 carbon types to be generated. The method also produces signal enhancement relative to broad band decoupled 13C NMR spectra of large proteins which generally have reduced nuclear Overhauser enhancements.
    Additional Material: 9 Ill.
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  • 13
    Electronic Resource
    Electronic Resource
    Chichester : Wiley-Blackwell
    Organic Magnetic Resonance 24 (1986), S. 783-791 
    ISSN: 0749-1581
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: 13C NMR spin-lattice relaxation times (T1) have been measured for a series of meta- and para-substituted phenylbicyclo[2.2.2]octanes in CDCl3 solution. The non-equivalence of NT1 values (N = number of attached hydrogens) for the various protonated carbons in these molecules indicates that motion is highly anisotropic. Analysis of the T1 data using the Woessner formalism for axially symmetric ellipsoids yields a set of diffusion coefficients for overall and internal motion. In para-substituted derivatives, motion about the symmetry axis is 3-12 times faster than motion about the perpendicular axes, depending on the substituent. Both the size (inertia) and the interacting properties of the substituent are important in determining the motional anisotropy, as indicated by the following observed order: H 〈 NH2 〈 CH3 〈 NO2 〈 CH2OH 〈 Br 〈 NH3+ 〈 CO2H. The change in anisotropy is a result of the anchoring effect of the substituent (via either its inertia or its hydrogen-bonding ability), which restricts motion about axes perpendicular to the long axis of the molecule. In meta derivatives, a similar model of motional anisotropy is observed, although the absolute magnitudes of diffusion coefficients are smaller than for the para series. In both series, the bicyclooctane ring undergoes fast internal motion relative to the phenyl ring. This reflects the fact that the bicyclooctane ring is able to rotate essentially in its own volume, with minimum disturbance to neighbouring solvent molecules. On the other hand, the planar phenyl ring must displace solvent molecules as it rotates.
    Additional Material: 6 Tab.
    Type of Medium: Electronic Resource
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  • 14
    Electronic Resource
    Electronic Resource
    Chichester : Wiley-Blackwell
    Organic Magnetic Resonance 26 (1988), S. 275-280 
    ISSN: 0749-1581
    Keywords: Thyroxine ; Triiodothyronine ; Variable-temperature ; 1H NMR ; Activation barriers ; Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: 1H NMR spectra at 300 and 400 MHz have been recorded for the thyroid hormones thyroxine (T4) and triiodothyronine (T3) over a range of temperatures from 175 to 298 K in MeOH-d4. Above 200 K the aromatic region of the NMR spectrum of T4 consists of two peaks, one for the H-2′, H-6′ protons and one for H-2,H-6. As the temperature is lowered each of these resonances first broadens and then splits into two peaks of equal intensity at low temperature. This is consistent with slowed exchange between two equally populated conformers. Similar behaviour is noted for T3, although in this case the spectrum is complicated by the presence of spin-spin splitting. Consideration of coalescence temperatures and a line-shape analysis yielded activation barriers in the range 35-38 kJ mol-1. It is concluded that the observed spectral changes are due to dynamic interconversion between proximal and distal forms of the hormones, and that the interconversion takes place by cooperative rotations around the bonds between each phenyl ring and the linking oxygen atom.
    Additional Material: 7 Ill.
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  • 15
    Electronic Resource
    Electronic Resource
    Chichester : Wiley-Blackwell
    Organic Magnetic Resonance 24 (1986), S. 862-871 
    ISSN: 0749-1581
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Aromatic 13C chemical shifts are reported for an extensive set (15 common substituents) of 1,3-disubstituted benzenes measured at low concentration in deuteriochloroform. The substituent chemical shift data show systematic non-additivity. Data for the para- and two meta-positions to the variable substituent were analysed using the recently developed non-linear resonance (DSP-NLR) and standard (DSP) dual substituent parameter equations. It is shown for these positions that mutual substituent interaction is responsible for the non-additive shifts and that (a) this interaction has both an inductive (polar) and a resonance component, even for meta-oriented substituents, and (b) the shift-charge ratio term extends past the ipso-position. These results are discussed in terms of local paramagnetic shielding contributions to 13C shifts.
    Additional Material: 4 Ill.
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  • 16
    Publication Date: 2019-10-17
    Description: Grb7 is an adapter protein, overexpressed in HER2+ve breast and other cancers, and identified as a therapeutic target. Grb7 promotes both proliferative and migratory cellular pathways through interaction of its SH2 domain with upstream binding partners including HER2, SHC, and FAK. Here we present the evaluation of a series of monocyclic and bicyclic peptide inhibitors that have been developed to specifically and potently target the Grb7 SH2-domain. All peptides tested were found to inhibit signaling in both ERK and AKT pathways in SKBR-3 and MDA-MB-231 cell lines. Proliferation, migration, and invasion assays revealed, however, that the second-generation bicyclic peptides were not more bioactive than the first generation G7-18NATE peptide, despite their higher in vitro affinity for the target. This was found not to be due to steric hindrance by the cell-permeability tag, as ascertained by ITC, but to differences in the ability of the bicyclic peptides to interact with and penetrate cellular membranes, as determined using SPR and mass spectrometry. These studies reveal that just small differences to amino acid composition can greatly impact the effectiveness of peptide inhibitors to their intracellular target and demonstrate that G7-18NATE remains the most effective peptide inhibitor of Grb7 developed to date.
    Electronic ISSN: 1420-3049
    Topics: Chemistry and Pharmacology
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  • 17
    Publication Date: 2012-02-15
    Electronic ISSN: 2072-6651
    Topics: Chemistry and Pharmacology , Medicine
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  • 18
    Publication Date: 2020-01-12
    Description: This study reports the isolation of two novel cysteine-rich antibacterial peptides, turgencin A and turgencin B, along with their oxidized derivatives, from the Arctic marine colonial ascidian Synoicum turgens. The peptides are post-translationally modified, containing six cysteines with an unusual disulfide connectivity of Cys1-Cys6, Cys2-Cys5, and Cys3-Cys4 and an amidated C-terminus. Furthermore, the peptides contain methionine residues resulting in the isolation of peptides with different degrees of oxidation. The most potent peptide, turgencin AMox1 with one oxidized methionine, displayed antimicrobial activity against both Gram-negative and Gram-positive bacteria with a minimum inhibitory concentration (MIC) as low as 0.4 µM against selected bacterial strains. In addition, the peptide inhibited the growth of the melanoma cancer cell line A2058 (IC50 = 1.4 µM) and the human fibroblast cell line MRC-5 (IC50 = 4.8 µM). The results from this study show that natural peptides isolated from marine tunicates have the potential to be promising drug leads.
    Electronic ISSN: 1660-3397
    Topics: Chemistry and Pharmacology
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  • 19
    Publication Date: 2020-08-24
    Description: Plant defensins are best known for their antifungal activity and contribution to the plant immune system. The defining feature of plant defensins is their three-dimensional structure known as the cysteine stabilized alpha-beta motif. This protein fold is remarkably tolerant to sequence variation with only the eight cysteines that contribute to the stabilizing disulfide bonds absolutely conserved across the family. Mature defensins are typically 46–50 amino acids in length and are enriched in lysine and/or arginine residues. Examination of a database of approximately 1200 defensin sequences revealed a subset of defensin sequences that were extended in length and were enriched in histidine residues leading to their classification as histidine-rich defensins (HRDs). Using these initial HRD sequences as a query, a search of the available sequence databases identified over 750 HRDs in solanaceous plants and 20 in brassicas. Histidine residues are known to contribute to metal binding functions in proteins leading to the hypothesis that HRDs would have metal binding properties. A selection of the HRD sequences were recombinantly expressed and purified and their antifungal and metal binding activity was characterized. Of the four HRDs that were successfully expressed all displayed some level of metal binding and two of four had antifungal activity. Structural characterization of the other HRDs identified a novel pattern of disulfide linkages in one of the HRDs that is predicted to also occur in HRDs with similar cysteine spacing. Metal binding by HRDs represents a specialization of the plant defensin fold outside of antifungal activity.
    Electronic ISSN: 2309-608X
    Topics: Biology
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  • 20
    Publication Date: 2019-08-26
    Description: Tachyplesin I, II and III are host defense peptides from horseshoe crab species with antimicrobial and anticancer activities. They have an amphipathic β-hairpin structure, are highly positively-charged and differ by only one or two amino acid residues. In this study, we compared the structure and activity of the three tachyplesin peptides alongside their backbone cyclized analogues. We assessed the peptide structures using nuclear magnetic resonance (NMR) spectroscopy, then compared the activity against bacteria (both in the planktonic and biofilm forms) and a panel of cancerous cells. The importance of peptide-lipid interactions was examined using surface plasmon resonance and fluorescence spectroscopy methodologies. Our studies showed that tachyplesin peptides and their cyclic analogues were most potent against Gram-negative bacteria and melanoma cell lines, and showed a preference for binding to negatively-charged lipid membranes. Backbone cyclization did not improve potency, but improved peptide stability in human serum and reduced toxicity toward human red blood cells. Peptide-lipid binding affinity, orientation within the membrane, and ability to disrupt lipid bilayers differed between the cyclized peptide and the parent counterpart. We show that tachyplesin peptides and cyclized analogues have similarly potent antimicrobial and anticancer properties, but that backbone cyclization improves their stability and therapeutic potential.
    Print ISSN: 1661-6596
    Electronic ISSN: 1422-0067
    Topics: Chemistry and Pharmacology
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