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  • Hindawi  (1)
  • Wiley-Blackwell  (1)
  • 1
    ISSN: 0886-9383
    Keywords: Experimental design ; Binding ; Scatchard analysis ; Model ; Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The design of an experiment for the determination of binding parameters in the association between a ligand and a macromolecule with two groups of non-interacting binding sites is proposed. In the Gauss-Newton non-linear least squares treatment the standard deviation of each parameter is given as the product of two terms: one depending on the experimental error and the other, the diagonal element of the dispersion matrix, depending only on the independent variables of the system. In order to reach an optimal experimental design, these diagonal elements of the information matrix have to be minimized. In our approach this is achieved by searching those values of the independent variable which maximize the determinant of the information matrix. Furthermore, the limits of validity of the model are deduced from an analysis of the diagonal elements of the information matrix obtained under optimal conditions.
    Additional Material: 5 Ill.
    Type of Medium: Electronic Resource
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  • 2
    Publication Date: 2014-01-01
    Description: P1D2E3K4H5E6L7(PK9-H), a fragment of Ypk9, the yeast homologue of the human Park9 protein, was studied for its coordination abilities towards Ni(II) and Cu(II) ions through mono- and bi-dimensional NMR techniques. Both proteins are involved in the transportation of metal ions, including manganese and nickel, from the cytosol to the lysosomal lumen. Ypk9 showed manganese detoxification role, preventing a Mn-induced Parkinsonism (PD) besides mutations in Park9, linked to a juvenile form of the disease. Here, we tested PK9-H with Cu(II) and Ni(II) ions, the former because it is an essential element ubiquitous in the human body, so its trafficking should be strictly regulated and one cannot exclude that Ypk9 may play a role in it, and the latter because, besides being a toxic element for many organisms and involved in different pathologies and inflammation states, it seems that the protein confers protection against it. NMR experiments showed that both cations can bind PK9-H in an effective way, leading to complexes whose coordination mode depends on the pH of the solution. NMR data have been used to build a model for the structure of the major Cu(II) and Ni(II) complexes. Structural changes in the conformation of the peptide with organized side chain orientation promoted by nickel coordination were detected.
    Print ISSN: 2356-6140
    Electronic ISSN: 1537-744X
    Topics: Natural Sciences in General
    Published by Hindawi
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