ALBERT

Description: The mobilization of carbon in degrading permafrost is a long-term process and an important feedback upon climate change. Under submarine conditions substantial permafrost warming occurs millennia before permafrost thaws, potentially stimulating microbial communities. How microbial community composition and abundance responded to millennial-scale permafrost warming remains, however, unkown. We measured the in situ development of bacterial community composition and abundance together with temperature, salinity and pore water chemistry along an onshore-offshore transect on the Siberian Arctic Shelf. Samples derived from ice-bonded terrestrial permafrost comparable in age and sedimentation history that had been warming by more than 10 °C over the last 2500 years. Bacterial assemblages identified through amplicon sequencing correlated only weakly with temperature but strongly with pore water stable isotope signatures. They showed a significant spatial variation. Bacterial 16S rRNA gene copies quantified through qPCR negatively correlated with rising temperature, while both gene copies and total cell counts negatively correlated with increasing pore water salinity. Correlations of microbial community composition and abundance to stable isotope signatures and pore water salinity imply that they still mainly reflect the sedimentation history. On time-scales of centuries, permafrost warming coincided with decreasing microbial abundances, whereas millennia after inundation, microbial cell abundance was similar to onshore permafrost. We suggest that, as long as permafrost remains frozen the effect of warming alone on the permafrost-carbon-feedback is marginally even on time-scales of millennia because it has an overall low-level effect on microbial community composition and abundance.

Description: Submarine permafrost is more vulnerable to thawing than permafrost on land. Besides increased heat transfer from the ocean water, the penetration of salt lowers the freezing temperature and accelerates permafrost degradation. This data set provides sediment temperatures and pore water chemistry from two submarine permafrost cores from the Laptev Sea on the East Siberian Arctic Shelf which inundated about 540 and 2500 years ago. These data are published in partnership with a paper by Magritz et al., that traces how bacterial communities develop depending on duration of the marine influence and pore water chemistry. Magritz et al. (2017) show that submarine permafrost is a source of microbial life deep below the seafloor where it forms an unusual, non-steady state habitat. Pore water chemistry revealed different pore water units that reflected stages of permafrost thaw. Millennia after inundation by sea water, bacteria stratify into communities in permafrost, marine-affected permafrost, and seabed sediments. In contrast to pore water chemistry, the development of bacterial community structure, diversity and abundance in submarine permafrost appear site-specific, suggesting that both sedimentation and permafrost thaw histories strongly affect bacteria. Finally, highest total cell counts, DNA concentrations and bacterial gene copy numbers were observed in the ice-bonded unaffected permafrost unit of the longer inundated core, suggesting that permafrost bacterial communities exposed to submarine conditions proliferate millennia after warming.

Description: The rewetting of drained peatlands alters peat geochemistry and often leads to sustained elevated methane emission. Although this methane is produced entirely by microbial activity, the distribution and abundance of methane-cycling microbes in rewetted peatlands, especially in fens, is rarely described. In this study, we compare the community composition and abundance of methane-cycling microbes in relation to peat porewater geochemistry in two rewetted fens in northeastern Germany, a coastal brackish fen and a freshwater riparian fen, with known high methane fluxes. We utilized 16S rRNA high-throughput sequencing and quantitative polymerase chain reaction (qPCR) on 16S rRNA, mcrA, and pmoA genes to determine microbial community composition and the abundance of total bacteria, methanogens, and methanotrophs. Electrical conductivity (EC) was more than 3 times higher in the coastal fen than in the riparian fen, averaging 5.3 and 1.5 mS cm−1, respectively. Porewater concentrations of terminal electron acceptors (TEAs) varied within and among the fens. This was also reflected in similarly high intra- and inter-site variations of microbial community composition. Despite these differences in environmental conditions and electron acceptor availability, we found a low abundance of methanotrophs and a high abundance of methanogens, represented in particular by Methanosaetaceae, in both fens. This suggests that rapid (re)establishment of methanogens and slow (re)establishment of methanotrophs contributes to prolonged increased methane emissions following rewetting.

Description: Warming of the Arctic led to an increase in permafrost temperatures by about 0.3 ∘C during the last decade. Permafrost warming is associated with increasing sediment water content, permeability, and diffusivity and could in the long term alter microbial community composition and abundance even before permafrost thaws. We studied the long-term effect (up to 2500 years) of submarine permafrost warming on microbial communities along an onshore–offshore transect on the Siberian Arctic Shelf displaying a natural temperature gradient of more than 10 ∘C. We analysed the in situ development of bacterial abundance and community composition through total cell counts (TCCs), quantitative PCR of bacterial gene abundance, and amplicon sequencing and correlated the microbial community data with temperature, pore water chemistry, and sediment physicochemical parameters. On timescales of centuries, permafrost warming coincided with an overall decreasing microbial abundance, whereas millennia after warming microbial abundance was similar to cold onshore permafrost. In addition, the dissolved organic carbon content of all cores was lowest in submarine permafrost after millennial-scale warming. Based on correlation analysis, TCC, unlike bacterial gene abundance, showed a significant rank-based negative correlation with increasing temperature, while bacterial gene copy numbers showed a strong negative correlation with salinity. Bacterial community composition correlated only weakly with temperature but strongly with the pore water stable isotopes δ18O and δD, as well as with depth. The bacterial community showed substantial spatial variation and an overall dominance of Actinobacteria, Chloroflexi, Firmicutes, Gemmatimonadetes, and Proteobacteria, which are amongst the microbial taxa that were also found to be active in other frozen permafrost environments. We suggest that, millennia after permafrost warming by over 10 ∘C, microbial community composition and abundance show some indications for proliferation but mainly reflect the sedimentation history and paleoenvironment and not a direct effect through warming.