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  • 1
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    NOAA/National Centers for Coastal Ocean Science | Charleston, SC
    In:  http://aquaticcommons.org/id/eprint/14662 | 403 | 2014-02-21 22:08:38 | 14662 | United States National Ocean Service
    Publication Date: 2021-07-01
    Description: A study was initiated in May 2011, under the direction of the Deepwater Horizon (DWH) Natural Resource Damage Assessment (NRDA) Deepwater Benthic Communities Technical Working Group (NRDA Deep Benthic TWG), to assess potential impacts of the DWH oil spill on sediments and resident benthic fauna in deepwater (〉 200 meters) areas of the Gulf. Key objectives of the study were to complete the analysis of samples from 65 priority stations sampled in September-October 2010 on two DWH Response cruises (Gyre and Ocean Veritas) and from 38 long-term monitoring sites (including a subset of 35 of the original 65) sampled on a follow-up NRDA cruise in May-June 2011. The present progress report provides a brief summary of results from the initial processing of samples from fall 2010 priority sites (plus three additional historical sites). Data on key macrofaunal, meiofaunal, and abiotic environmental variables are presented for each of these samples and additional maps are included to depict spatial patterns in these variables throughout the study region. The near-field zone within about 3 km of the wellhead, where many of the stations showed evidence of impaired benthic condition (e.g. low taxa richness, high nematode/harpacticoid-copepod ratios), also is an area that contained some of the highest concentrations of total petroleum hydrocarbons (TPH), total polycyclic aromatic hydrocarbons (total PAHs), and barium in sediments (as possible indicators of DWH discharges). There were similar co-occurrences at other sites outside this zone, especially to the southwest of the wellhead out to about 15 km. However, there also were exceptions to this pattern, for example at several farther-field sites in deeper-slope and canyon locations where there was low benthic species richness but no evidence of exposure to DWH discharges. Such cases are consistent with historical patterns of benthic distributions in relation to natural controlling factors such as depth, position within canyons, and availability of organic matter derived from surface-water primary production.
    Keywords: Biology ; Ecology ; Fisheries ; Pollution
    Repository Name: AquaDocs
    Type: monograph
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  • 2
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    NOAA/National Centers for Coastal Ocean Science | Charleston, SC
    In:  http://aquaticcommons.org/id/eprint/14759 | 403 | 2014-02-26 21:18:00 | 14759 | United States National Ocean Service
    Publication Date: 2021-07-03
    Description: The mucus surface layer of corals plays a number of integral roles in their overall health and fitness. This mucopolysaccharide coating serves as vehicle to capture food, a protective barrier against physical invasions and trauma, and serves as a medium to host a community of microorganisms distinct from the surrounding seawater. In healthy corals the associated microbial communities are known to provide antibiotics that contribute to the coral’s innate immunity and function metabolic activities such as biogeochemical cycling.Culture-dependent (Ducklow and Mitchell, 1979; Ritchie, 2006) and culture-independent methods (Rohwer, et al., 2001; Rohwer et al., 2002; Sekar et al., 2006; Hansson et al., 2009; Kellogg et al., 2009) have shown that coral mucus-associated microbial communities can change with changes in the environment and health condition of the coral. These changes may suggest that changes in the microbial associates not only reflect health status but also may assist corals in acclimating to changing environmental conditions. With the increasing availability of molecular biology tools, culture-independent methods are being used more frequently for evaluating the health of the animal host. Although culture-independent methods are able to provide more in-depth insights into the constituents of the coral surface mucus layer’s microbial community, their reliability and reproducibility rely on the initial sample collection maintaining sample integrity. In general, a sample of mucus is collected from a coral colony, either by sterile syringe or swab method (Woodley, et al., 2008), and immediately placed in a cryovial. In the case of a syringe sample, the mucus is decanted into the cryovial and the sealed tube is immediately flash-frozen in a liquid nitrogen vapor shipper (a.k.a., dry shipper). Swabs with mucus are placed in a cryovial, and the end of the swab is broken off before sealing and placing the vial in the dry shipper. The samples are then sent to a laboratory for analysis. After the initial collection and preservation of the sample, the duration of the sample voyage to a recipient laboratory is often another critical part of the sampling process, as unanticipated delays may exceed the length of time a dry shipper can remain cold, or mishandling of the shipper can cause it to exhaust prematurely. In remote areas, service by international shipping companies may be non-existent, which requires the use of an alternative preservation medium. Other methods for preserving environmental samples for microbial DNA analysis include drying on various matrices (DNA cards, swabs), or placing samples in liquid preservatives (e.g., chloroform/phenol/isoamyl alcohol, TRIzol reagent, ethanol). These methodologies eliminate the need for cold storage, however, they add expense and permitting requirements for hazardous liquid components, and the retrieval of intact microbial DNA often can be inconsistent (Dawson, et al., 1998; Rissanen et al., 2010).A method to preserve coral mucus samples without cold storage or use of hazardous solvents, while maintaining microbial DNA integrity, would be an invaluable tool for coral biologists, especially those in remote areas. Saline-saturated dimethylsulfoxide-ethylenediaminetetraacetic acid (20% DMSO-0.25M EDTA, pH 8.0), or SSDE, is a solution that has been reported to be a means of storing tissue of marine invertebrates at ambient temperatures without significant loss of nucleic acid integrity (Dawson et al., 1998, Concepcion et al., 2007). While this methodology would be a facile and inexpensive way to transport coral tissue samples, it is unclear whether the coral microbiota DNA would be adversely affected by this storage medium either by degradation of the DNA, or a bias in the DNA recovered during the extraction process created by variations in extraction efficiencies among the various community members. Tests to determine the efficacy of SSDE as an ambient temperature storage medium for coral mucus samples are presented here.
    Keywords: Chemistry ; Fisheries
    Repository Name: AquaDocs
    Type: monograph
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  • 3
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    NOAA/National Centers for Coastal Ocean Science | Charleston, SC
    In:  http://aquaticcommons.org/id/eprint/14779 | 403 | 2014-02-27 19:45:38 | 14779 | United States National Ocean Service
    Publication Date: 2021-07-03
    Description: A study was conducted, in association with the Alabama and Mississippi National Estuarine Research Reserves (NERRs) in the Gulf of Mexico (GoM) as well as the Georgia, SouthCarolina, and North Carolina NERRs in the Southeast (SE), to evaluate the impacts of coastal development on tidal creek sentinel habitats, including potential impacts to human health and well-being. Uplands associated with Southeast and Gulf of Mexico tidal creeks, and the saltmarshes they drain, are popular locations for building homes, resorts, and recreational facilities because of the high quality of life and mild climate associated with these environments. Tidal creeks form part of the estuarine ecosystem characterized by high biological productivity, great ecological value, complex environmental gradients, and numerous interconnected processes. This research combined a watershed-level study integrating ecological, public health and human dimension attributes with watershed-level land cover data. The approach used for this researchwas based upon a comparative watershed and ecosystem approach that sampled tidal creek networks draining developed watersheds (e.g., suburban, urban, and industrial) as well as undeveloped sites (Holland et al. 2004, Sanger et al. 2008). The primary objective of this work was to define the relationships between coastal development with its concomitant land cover changes, and non-point source pollution loading and the ecological and human health and wellbeing status of tidal creek ecosystems.Nineteen tidal creek systems, located along the Southeastern United States coast from southern North Carolina to southern Georgia, and five Gulf of Mexico systems from Alabama and Mississippi were sampled during summer (June-August) 2005, 2006 (SE) and 2008 (GoM). Within each system, creeks were divided into two primary segments based upon tidal zoning: intertidal (i.e., shallow, narrow headwater sections) and subtidal (i.e., deeper and wider sections), and watersheds were delineated for each segment. In total, we report findings on 29 intertidal and 24 subtidal creeks. Indicators sampled throughout each creek included water quality (e.g., dissolved oxygen, salinity, nutrients, chlorophyll-a levels), sediment quality (e.g., characteristics, contaminant levels including emerging contaminants), pathogen and viral indicators (e.g., fecalcoliform, enterococci, F+ coliphages, F- coliphages), and abundance and tissue contamination of biological resources (e.g., macrobenthic and nektonic communities, shellfish tissue contaminants).Tidal creeks have been identified as a sentinel habitat to assess the impacts of coastal development on estuarine areas in the southeastern US. A conceptual model for tidal creeks in the southeastern US identifies that human alterations (stressors) of upland in a watershed such asincreased impervious cover will lead to changes in the physical and chemical environment such as microbial and nutrient pollution (exposures), of a receiving water body which then lead to changes in the living resources (responses). The overall objective of this study is to evaluate the applicability of the current tidal creek classification framework and conceptual model linkingtidal creek ecological condition to potential impacts of development and urban growth on ecosystem value and function in the Gulf of Mexico US in collaboration with Gulf of Mexico NERR sites. The conceptual model was validated for the Gulf of Mexico US tidal creeks. Thetidal creek classification system developed for the southeastern US could be applied to the Gulf of Mexico tidal creeks; however, some differences were found that warrant further examination. In particular, pollutants appeared to translate further downstream in the Gulf of Mexico US compared to the southeastern US. These differences are likely the result of the morphologicaland oceanographic differences between the two regions. Tidal creeks appear to serve as sentinel habitats to provide an early warning of the ensuing harm to the larger ecosystem in both the Southeastern and Gulf of Mexico US tidal creeks.
    Keywords: Biology ; Ecology ; Fisheries ; Management ; Pollution
    Repository Name: AquaDocs
    Type: monograph
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  • 4
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    Freshwater Biological Association | Windermere, UK
    In:  http://aquaticcommons.org/id/eprint/4770 | 1256 | 2011-09-29 15:55:29 | 4770 | Freshwater Biological Association
    Publication Date: 2021-07-06
    Description: This abstract summarises the 1953-1955 surveys of the distribution of benthos in the Rybinsk Reservoirs. It includes the mean biomass of benthos.
    Description: Translated from Russian into English
    Keywords: Biology ; Ecology ; Limnology ; Algae ; Freshwater lakes ; Freshwater ecology ; Phytobenthos ; Biomass ; Russia
    Repository Name: AquaDocs
    Type: monograph
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  • 5
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    Freshwater Biological Association | Windermere, UK
    In:  http://aquaticcommons.org/id/eprint/4791 | 1256 | 2011-09-29 15:53:46 | 4791 | Freshwater Biological Association
    Publication Date: 2021-07-06
    Description: This is a short excerpt of the original paper giving the key to the identification of the naupliar instars of the genus Cyclops.
    Description: Translated from German into English
    Keywords: Biology ; Limnology ; Freshwater crustaceans ; Identification keys ; Taxonomy ; Cyclops
    Repository Name: AquaDocs
    Type: monograph
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  • 6
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    Freshwater Biological Association | Windermere, UK
    In:  http://aquaticcommons.org/id/eprint/4807 | 1256 | 2011-09-29 15:52:40 | 4807 | Freshwater Biological Association
    Publication Date: 2021-07-06
    Description: This is a short excerpt of the original paper giving the key to the identification of the naupliar instars of the genus Cyclops.
    Description: Translated from German into English
    Keywords: Biology ; Limnology ; Freshwater crustaceans ; Identification keys ; Taxonomy ; Cyclops
    Repository Name: AquaDocs
    Type: monograph
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  • 7
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    Freshwater Biological Association | Windermere, UK
    In:  http://aquaticcommons.org/id/eprint/4818 | 1256 | 2011-09-29 15:51:20 | 4818 | Freshwater Biological Association
    Publication Date: 2021-07-06
    Description: Cases of mutual exclusion of two species of organisms in nature are known in large numbers. In the majority, they make different demands on the environ- ment which makes co-occurrence impossible. Less frequent are those cases in which a definite activity of one species prevents the occurrence of the other in the same region. An experiment was carried out n order to establish if Chydorus sphaericus can co-occur with water-snails. It emerged that a substance soluble in water which is given off by snails is responsible for the negative effect on small crustacea.
    Description: Translated from German into English
    Keywords: Biology ; Limnology ; Interspecific relationships ; Freshwater crustaceans ; Freshwater molluscs ; Experimental research ; Austria ; Lake Neusiedler
    Repository Name: AquaDocs
    Type: monograph
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  • 8
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    Freshwater Biological Association | Windermere, UK
    In:  http://aquaticcommons.org/id/eprint/4849 | 1256 | 2011-09-29 15:49:14 | 4849 | Freshwater Biological Association
    Publication Date: 2021-07-06
    Description: The seminal bag, or seminal receptacle, forms a characteristic organ of cyclopids, serving for retention of the sperms discharged from the spermatophores. The structure of the seminal receptacle, more precisely its form, is fairly widely used in diagnosis and undoubtedly can be more widely applied in the systematics of the group. Within the limits of the family Cyclopidae it is possible to distinguish crustaceans with three basic types of seminal bag. The differences consist of the position which this organ occupies in the genital segment. of one species, we carried out a series of observations on its formation in ontogenesis and during the life of the adult stage. As material for observation the study used laboratory cultures of three species; Acanthocyclops americanus (Marsh) from the plankton of the Moscow River, Cyclops vicinus Uljan and Mesocyclops leuckarti Glaus from the plankton of the channel section of the upper part of the Gorkovsk reservoir. The author concluded that the irreversibility of the changes in the seminal receptacle presents the possibility of utilising this structure as one of the indicators of the growth of the individual.
    Description: Translated from Russian into English
    Keywords: Biology ; Limnology ; Freshwater crustaceans ; Animal reproductive organs ; Taxonomy ; Laboratory culture ; Russia
    Repository Name: AquaDocs
    Type: monograph
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  • 9
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    Freshwater Biological Association | Windermere, UK
    In:  http://aquaticcommons.org/id/eprint/4885 | 1256 | 2011-09-29 15:46:45 | 4885 | Freshwater Biological Association
    Publication Date: 2021-07-07
    Description: The river perch (Perca fluviatilis L.) is most active in the daytime hours, and displays seasonal changes of diel rhythm with a break of the rhythm in spring and autumn. In the present work data were obtained on the motor activity of 3 perch measuring l8-20 cm, caught by net in the littoral of a reservoir and spawned under laboratory conditions. The degree of intensity of movement of perch was judged by special experiments. The results are summarised in this short paper.
    Description: Translated from Russian into English
    Keywords: Biology ; Ecology ; Limnology ; Freshwater fish ; Activity patterns ; Experimental research ; Perca fluviatilis
    Repository Name: AquaDocs
    Type: monograph
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  • 10
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    Freshwater Biological Association | Windermere, UK
    In:  http://aquaticcommons.org/id/eprint/4882 | 1256 | 2011-09-29 15:46:20 | 4882 | Freshwater Biological Association
    Publication Date: 2021-07-07
    Description: The Goggausee, a small, shallow, meromictic lake(700m long, 150m wide, max. depth=12m, mean depth=6m), was the site of a week long study (19-26 May 1974) of the limnology department of the University of Vienna. The study comprised pollen analysis and palaeolimnological studies on the one hand, as well as a stock- taking of physiochemical factors, primary production, bacteria, zooplankton, zoo benthos and fish on the other. This paper studies the zooplankton of the lake. The Goggausee is a meromictic lake, with its anoxic deep water, that restricts the vertical distribution of most zooplankton. The aim of the study was to pursue the vertical distribution of the rotifers and Crustacea. Density of individuals, biomass, percentages of zooplankton together and crustaceans and rotifers as groups. Special consideration is given to the the Dipteran Chaoborus flavicans.
    Description: Translated from German into English
    Keywords: Biology ; Ecology ; Limnology ; Zooplankton ; Environmental surveys ; Freshwater crustaceans ; Biomass ; Freshwater lakes ; Population density ; Austria ; Chaoborus flavicans
    Repository Name: AquaDocs
    Type: monograph
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