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  • 1
    ISSN: 1574-6968
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: We report the characterisation of Nocardioides sp. SP12, an atrazine-degrading bacteria isolated from atrazine-treated bulk- and maize rhizosphere soil. Based on 16S rDNA alignment, strain SP12 showed close phylogenic relationships with Nocardioides sp. C157 and Nocardioides simplex. Internal transcribed spacer (ITS) sequences of strain SP12 were longer than those of other Nocardioides sp. and present Ala- and Ile-tRNA unlike Actinomycetales. Nocardioides sp. SP12 presents a novel atrazine catabolic pathway combining trzN with atzB and atzC. Atrazine biodegradation ends in a metabolite that co-eluted in HPLC with cyanuric acid. This metabolite shows an absorption spectrum identical to that of cyanuric acid with a maximal absorption at 214.6 nm. The mass of the atrazine metabolite is in concordance with that of cyanuric acid according to mass spectrometry analysis. Quantitative PCR revealed that the ITS sequence of Nocardioides sp. SP12 was at a lower number than the one of trzN in atrazine-treated soil samples. It suggests that trzN could also be present in other atrazine degrading bacteria. The numbers of trzN and ITS sequences of Nocardioides sp. SP12 were higher in the maize rhizosphere than in bulk soil.
    Type of Medium: Electronic Resource
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  • 2
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    European journal of soil science 47 (1996), S. 0 
    ISSN: 1365-2389
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Temperate saltmarshes are a potential source of atmospheric methane. We have measured the concentration and emission of methane in typical saltmarsh soils (Salic Fluvisols) and humus-rich saltmarsh soils (Thionic Fluvisols) from the German North Sea coast. We also measured the methane production rates of the latter. The methane content of typical saltmarsh soils reached 12.0 μmol 1−1, although values of 1–4 μmol 1−1 were usual. The sulphate concentrations of the pore-water were about 10 mm, which means sulphate reduction is not limited and methanogenesis would be suppressed. Methane concentrations were generally largest in summer. Independent of the redox potential and the degree of soil development, methane concentrations were smallest in those soils poorest in humus. Methane emission rates were almost zero. In the humus-rich saltmarsh soils, methane concentrations were roughly a thousand times larger than those in typical saltmarsh soils, reaching values of 23 mmol 1−1 The sulphate concentrations of the pore-water were often less than 1 mM, indicating limited sulphate reduction. Methane production was up to 80 μg cm−3 day−1 and was not inhibited when we added sulphate. Methane emission rates reached up to 190 μg m−2 day−1 in summer, with values up to 20 μg m−2 day−1 at other times. The two kinds of saltmarsh soil behave quite differently: the typical saltmarsh soils act as a sink for methane; the humus-rich saltmarsh soils are a source.
    Type of Medium: Electronic Resource
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