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  • Articles  (3)
  • Blackwell Publishing Ltd  (3)
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  • 1
    ISSN: 1574-6968
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Marinobacter sp. strain CAB was cultivated with or without porous glass beads as solid support. Two substrates were used: the hydrophilic sodium lactate and a hydrophobic C18-isoprenoid ketone (6,10,14-trimethylpentadecan-2-one (TMP)). The substrate adsorption onto the beads was measured. Bacterial adhesion was determined by a direct count technique and amounted to 70% of total cells. In the immobilised cell cultures (ICC), generation times were 1.5 and 1.8 times shorter than in the planktonic cultures (FCC) with sodium lactate and with TMP, respectively. In ICC, the growth yields were lower (15.3FCC×109 and 0.8ICC×109 bacteria mg−1 of sodium lactate; 50FCC×109 and 35ICC×109 bacteria mg−1 of TMP). The mineralisation of substrates was estimated after mass spectrometric determination of the CO2 production rates of both free and immobilised cell cultures. The results indicated a higher specific CO2 production rate in the ICC with sodium lactate (3.1FCC±0.2 and 3.5ICC±0.3 nmol CO2 mg−1 protein min−1) but not in the ICC with TMP (1.9FCC±0.7 and 0.5ICC±0.3 nmol CO2 mg−1 protein min−1). The affinities for the two substrates were lower in the presence of the solid support (Km,ICC=18.2±0.2 μM and 37.1±2.0 μM, for sodium lactate and TMP, respectively) than without support (Km,FCC=8.5±1.5 μM and 8.4±1.2 μM, for sodium lactate and TMP, respectively). Moreover, the presence of a solid support showed a lower inhibition by the TMP (Ki,FCC=3.8±1.0 μM and Ki,ICC=12.2±2.5 μM) which may explain why the immobilised cell cultures degraded hydrophobic TMP more efficiently than the planktonic cultures.
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  • 2
    ISSN: 1574-6941
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: The process of enrichment and subsequently isolation of squalene degrading denitrifying bacteria has been developed. The enrichment method used in this study targeted denitrifying bacteria, therefore an initial enrichment incubation using nitrate amendments under anaerobic conditions was performed before squalene amendment. Denaturant gradient gel electrophoresis (DGGE) analysis of polymerase chain reaction (PCR)-amplified DNA fragments prepared from extracted DNA was used to compare the composition of bacterial communities at various steps of enrichment cultures and the diversity of the 80 isolated strains obtained by classical culture methods. After 8 months of anaerobic incubation, the squalene biodegradation rate reached 80%. The community composition changed substantially during the incubation time. The enrichment cultures were dominated by 12 phylotypes, of which eight corresponded to cultivatable strains. Their identities were established by sequencing V3–V5 16SrRNA PCR fragments directly or after excision of DGGE bands and comparing the sequences with those available in GenBank. Most of the isolates were Proteobacteria of the gamma subgroup; among them, seven novel denitrifying bacteria which were capable of using squalene as the sole carbon source, were isolated and characterized.
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  • 3
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology ecology 19 (1996), S. 0 
    ISSN: 1574-6941
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Abstract: A total of 28 nitrate-reducing bacteria were isolated from marine sediment (Mediterranean coast of France) in which dissimilatory reduction of nitrate to ammonium (DRNA) was estimated as 80% of the overall nitrate consumption. Thirteen isolates were considered as denitrifiers and ten as dissimilatory ammonium producers. 15N ammonium production from 15N nitrate by an Enterobacter sp. and a Vibrio sp., the predominant bacteria involved in nitrate ammonification in marine sediment, was characterized in pure culture studies. For both strains studied, nitrate-limited culture (1 mM) produced ammonium as the main product of nitrate reduction (〉 90%) while in the presence of 10 mM nitrate, nitrite was accumulated in the spent media and ammonia production was less efficient. Concomitantly with the dissimilation of nitrate to nitrite and ammonium the molar yield of growth on glucose increased. Metabolic products of glucose were investigated under different growth conditions. Under anaerobic conditions without nitrate, ethanol was formed as the main product; in the presence of nitrate, ethanol disappeared and acetate increased concomitantly with an increased amount of ammonium. These results indicate that nitrite reduction to ammonium allows NAD regeneration and ATP synthesis through acetate formation, instead of ethanol formation which was favoured in the absence of nitrate.
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