ALBERT

Description: Background: Nocardia cyriacigeorgica is recognized as one of the most prevalent etiological agents of human nocardiosis. Human exposure to these Actinobacteria stems from direct contact with contaminated environmental matrices. The full genome sequence of N. cyriacigeorgica strain GUH-2 was studied to infer major trends in its evolution, including the acquisition of novel genetic elements that could explain its ability to thrive in multiple habitats. Results: N. cyriacigeorgica strain GUH-2 genome size is 6.19 Mb-long, 82.7% of its CDS have homologs in at least another actinobacterial genome, and 74.5% of these are found in N. farcinica. Among N. cyriacigeorgica specific CDS, some are likely implicated in niche specialization such as those involved in denitrification and RuBisCO production, and are found in regions of genomic plasticity (RGP). Overall, 22 RGP were identified in this genome, representing 11.4% of its content. Some of these RGP encode a recombinase and IS elements which are indicative of genomic instability. CDS playing part in virulence were identified in this genome such as those involved in mammalian cell entry or encoding a superoxide dismutase. CDS encoding non ribosomal peptide synthetases (NRPS) and polyketide synthases (PKS) were identified, with some being likely involved in the synthesis of siderophores and toxins. COG analyses showed this genome to have an organization similar to environmental Actinobacteria. Conclusion: N. cyriacigeorgica GUH-2 genome shows features suggesting a diversification from an ancestral saprophytic state. GUH-2 ability at acquiring foreign DNA was found significant and to have led to functional changes likely beneficial for its environmental cycle and opportunistic colonization of a human host.

Description: The nature of the Ionian Sea crust has been the subject of scientific debate for more than 30 years, mainly because seismic imaging of the deep crust and upper mantle of the Ionian Abyssal Plain (IAP) has not been conclusive to date. The IAP is sandwiched between the Calabrian and Hellenic subduction zones in the central Mediterranean. A NNE–SSW-oriented 131 km long seismic refraction and wide-angle reflection profile, consisting of eight ocean bottom seismometers and hydrophones, was acquired in 2014. The profile was designed to univocally confirm the proposed oceanic nature of the IAP crust as a remnant of the Tethys and to confute its interpretation as a strongly thinned part of the African continental crust. A P-wave velocity model developed from travel-time forward modelling is refined by gravimetric data and synthetic modelling of the seismic data. A roughly 6–7 km thick crust with velocities ranging from 5.1 to 7.2 km s−1, top to bottom, can be traced throughout the IAP. In the vicinity of the Medina seamounts at the southern IAP boundary, the crust thickens to about 9 km and seismic velocities decrease to 6.8 km s−1 at the crust–mantle boundary. The seismic velocity distribution and depth of the crust–mantle boundary in the IAP document its oceanic nature and support the interpretation of the IAP as a remnant of the Tethys lithosphere with the Malta Escarpment as a transform margin and a Tethys opening in the NNW–SSE direction.

Description: The nature of the Ionian Sea crust has been the subject of scientific debate for more than 30 years, mainly because seismic imaging of the deep crust and upper mantle of the Ionian Abyssal Plain (IAP) has not been conclusive to date. The IAP is sandwiched between the Calabrian and Hellenic subduction zones in the central Mediterranean. To univocally confirm the proposed oceanic nature of the IAP crust as a remnant of the Tethys ocean and to confute its interpretation as a strongly thinned part of the African continental crust, a NE-SW oriented 131 km long seismic refraction and wide-angle reflection profile consisting of eight ocean bottom seismometers and hydrophones was acquired in 2014. A P-wave velocity model developed from travel time forward modelling is refined by gravimetric data and synthetic modelling of the seismic data. A roughly 6 km thick crust with velocities ranging from 5.1 km/s to 7.2 km/s, top to bottom, can be traced throughout the IAP. In the vicinity of the Medina Seamounts at the southern IAP boundary, the crust thickens to about 9 km and seismic velocities decrease to 6.8 km/s at the crust-mantle boundary. The seismic velocity distribution and depth of the crust-mantle boundary in the IAP document its oceanic nature, and support the interpretation of the IAP as a remnant of the Tethys oceanic lithosphere formed during the Permian and Triassic period.

Description: The nature of the Ionian Sea crust has been the subject of scientific debate for more than 30 years, mainly because seismic imaging of the deep crust and upper mantle of the Ionian Abyssal Plain (IAP) has not been conclusive to date. The IAP is sandwiched between the Calabrian and Hellenic subduction zones in the central Mediterranean. To univocally confirm the proposed oceanic nature of the IAP crust as a remnant of the Tethys ocean and to confute its interpretation as a strongly thinned part of the African continental crust, a NE-SW oriented 131 km long seismic refraction and wide-angle reflection profile consisting of eight ocean bottom seismometers and hydrophones was acquired in 2014. A P-wave velocity model developed from travel time forward modelling is refined by gravimetric data and synthetic modelling of the seismic data. A roughly 6km thick crust with velocities ranging from 5.1km/s to 7.2km/s, top to bottom, can be traced throughout the IAP. In the vicinity of the Medina Seamounts at the southern IAP boundary, the crust thickens to about 9km and seismic velocities decrease to 6.8km/s at the crust-mantle boundary. The seismic velocity distribution and depth of the crust-mantle boundary in the IAP document its oceanic nature, and support the interpretation of the IAP as a remnant of the Tethys oceanic lithosphere formed during the Permian and Triassic period.