ALBERT

Description: Background: Metaphase cytogenetics (MC), which has an important diagnostic, prognostic and therapeutic roles in myelodysplastic syndrome (MDS), is widely used as cytogenetic analyzing tools. It can present entire cytogenetic information at one time, although with some limitations such as Hypocellularity, fewer mitotic cells, secondary myelofibrosis and technicians' subjectivity. Single nucleotide polymorphism(SNP)array based karyotyping ( SNP-A based karyotyping) is a novel diagnostic tool which can detect copy number variations with a high resolution. More importantly, SNP-based array has a unique advantage in detection of loss of heterozygosity, also referred as to uniparental disomy (UPD), which results from duplication of a paternal (unimaternal) or maternal (unipaternal) chromosomal region and concurrent loss of the other allele. However the technology is still relatively expensive, and balanced structural METHOD: We analyzed SNP-A results from 127 patients diagnosed of MDS or MDS related myeloid malignancies(including 6 MDS/MPN, 11 acute myeloid leukemia from MDS, and 110 MDS). 122 patients of them had both MC and SNP-A results. We compared the frequency and diagnostic sensitivity between the cytogenetic aberration findings by MC and genomic alteration findings by SNP-A. In addition, we investigated the novel or additional lesions detected by SNP-A which had not been found by MC, and find further information about the edges of SNP-A. We drew attention to the missing matters of SNP-A which mentioned in MC reports to integrate the limits of SNP-A. We also used multiple-factor analysis to find out the specific situation which MC are not inferior to SNP-A. RESULTS: There are 199 genomic alteration findings in 127 patients by SNP-A ( including 43 UPDs, 57 gain alterations, 86 loss alterations and 13 complicated alterations). The average length of genomic alterations found by SNP-A is 27795.71Kb, the longest one is GainMosaic(1) (248375kb), the shortest is a UPD found in 17q (41.88Kb). In the 122 patients who had both MC and SNP-A results, SNP-A turns to be more effective than MC in significant chromosomal defects(58.2% vs 36.9%,P

Description: The global source–receptor relationships of sulfate concentrations, and direct and indirect radiative forcing (DRF and IRF) from 16 regions/sectors for years 2010–2014 are examined in this study through utilizing a sulfur source-tagging capability implemented in the Community Earth System Model (CESM) with winds nudged to reanalysis data. Sulfate concentrations are mostly contributed by local emissions in regions with high emissions, while over regions with relatively low SO2 emissions, the near-surface sulfate concentrations are primarily attributed to non-local sources from long-range transport. Regional source efficiencies of sulfate concentrations are higher over regions with dry atmospheric conditions and less export, suggesting that lifetime of aerosols, together with regional export, is important in determining regional air quality. The simulated global total sulfate DRF is −0.42 W m−2, with −0.31 W m−2 contributed by anthropogenic sulfate and −0.11 W m−2 contributed by natural sulfate, relative to a state with no sulfur emissions. In the Southern Hemisphere tropics, dimethyl sulfide (DMS) contributes 17–84 % to the total DRF. East Asia has the largest contribution of 20–30 % over the Northern Hemisphere mid- and high latitudes. A 20 % perturbation of sulfate and its precursor emissions gives a sulfate incremental IRF of −0.44 W m−2. DMS has the largest contribution, explaining −0.23 W m−2 of the global sulfate incremental IRF. Incremental IRF over regions in the Southern Hemisphere with low background aerosols is more sensitive to emission perturbation than that over the polluted Northern Hemisphere.

Description: In this study, we integrate recent in situ measurements with satellite retrievals of dust physical and radiative properties to quantify dust direct radiative effects on shortwave (SW) and longwave (LW) radiation (denoted as DRESW and DRELW, respectively) in the tropical North Atlantic during the summer months from 2007 to 2010. Through linear regression of the CERES-measured top-of-atmosphere (TOA) flux versus satellite aerosol optical depth (AOD) retrievals, we estimate the instantaneous DRESW efficiency at the TOA to be -49.7±7.1 W m−2 AOD−1 and -36.5±4.8 W m−2 AOD−1 based on AOD from MODIS and CALIOP, respectively. We then perform various sensitivity studies based on recent measurements of dust particle size distribution (PSD), refractive index, and particle shape distribution to determine how the dust microphysical and optical properties affect DRE estimates and its agreement with the above-mentioned satellite-derived DREs. Our analysis shows that a good agreement with the observation-based estimates of instantaneous DRESW and DRELW can be achieved through a combination of recently observed PSD with substantial presence of coarse particles, a less absorptive SW refractive index, and spheroid shapes. Based on this optimal combination of dust physical properties we further estimate the diurnal mean dust DRESW in the region of −10 W m−2 at TOA and −26 W m−2 at the surface, respectively, of which ∼ 30 % is canceled out by the positive DRELW. This yields a net DRE of about −6.9 and −18.3 W m−2 at TOA and the surface, respectively. Our study suggests that the LW flux contains useful information on dust particle size, which could be used together with SW observations to achieve a more holistic understanding of the dust radiative effect.

Description: In this paper, we studied the frequency of occurrence and shortwave direct radiative effects (DREs) of above-cloud aerosols (ACAs) over global oceans using 8 years (2007–2014) of collocated CALIOP and MODIS observations. Similar to previous work, we found high ACA occurrence in four regions: southeastern (SE) Atlantic region, where ACAs are mostly light-absorbing aerosols, i.e., smoke and polluted dust according to CALIOP classification, originating from biomass burning over the African Savanna; tropical northeastern (TNE) Atlantic and the Arabian Sea, where ACAs are predominantly windblown dust from the Sahara and Arabian deserts, respectively; and the northwestern (NW) Pacific, where ACAs are mostly transported smoke and polluted dusts from Asian. From radiative transfer simulations based on CALIOP–MODIS observations and a set of the preselected aerosol optical models, we found the DREs of ACAs at the top of atmosphere (TOA) to be positive (i.e., warming) in the SE Atlantic and NW Pacific regions, but negative (i.e., cooling) in the TNE Atlantic Ocean and the Arabian Sea. The cancellation of positive and negative regional DREs results in a global ocean annual mean diurnally averaged cloudy-sky DRE of 0.015 W m−2 (range of −0.03 to 0.06 W m−2) at TOA. The DREs at surface and within the atmosphere are −0.15 W m−2 (range of −0.09 to −0.21 W m−2), and 0.17 W m−2 (range of 0.11 to 0.24 W m−2), respectively. The regional and seasonal mean DREs are much stronger. For example, in the SE Atlantic region, the JJA (July–August) seasonal mean cloudy-sky DRE is about 0.7 W m−2 (range of 0.2 to 1.2 W m−2) at TOA. All our DRE computations are publicly available1. The uncertainty in our DRE computations is mainly caused by the uncertainties in the aerosol optical properties, in particular aerosol absorption, the uncertainties in the CALIOP operational aerosol optical thickness retrieval, and the ignorance of cloud and potential aerosol diurnal cycle. In situ and remotely sensed measurements of ACA from future field campaigns and satellite missions and improved lidar retrieval algorithm, in particular vertical feature masking, would help reduce the uncertainty. 1 https://drive.google.com/folderview?id=0B6gKx4dgNY0GMVYzcEd0bkZmRmc&usp=sharing

Description: Emissions and long-range transport of mineral dust and combustion-related aerosol from burning fossil fuels and biomass vary from year to year, driven by the evolution of the economy and changes in meteorological conditions and environmental regulations. This study offers both satellite and model perspectives of interannual variability and possible trend of combustion aerosol and dust in major continental outflow regions over the past 15 years (2003–2017). The decade-long record of aerosol optical depth (AOD, denoted as τ), separately for combustion aerosol (τc) and dust (τd), over global oceans is derived from the Collection 6 aerosol products of the Moderate Resolution Imaging Spectroradiometer (MODIS) onboard both Terra and Aqua. These MODIS/Aqua datasets, complemented by aerosol source-tagged simulations using the Community Atmospheric Model Version 5 (CAM5), are then analyzed to understand the interannual variability and potential trend of τc and τd in the major continental outflows. Both MODIS and CAM5 consistently yield a similar decreasing trend of −0.017 to −0.020 decade−1 for τc over the North Atlantic Ocean and the Mediterranean Sea that is attributable to reduced emissions from North America and Europe, respectively. On the contrary, both MODIS and CAM5 display an increasing trend of +0.017 to +0.036 decade−1 for τc over the tropical Indian Ocean, the Bay of Bengal, and the Arabian Sea, which reflects the influence of increased anthropogenic emissions from South Asia and Middle East in the last two decades. Over the northwestern Pacific Ocean that is often affected by East Asian emissions of pollution and dust, the MODIS retrievals show a decreasing trend of −0.021 decade−1 for τc and −0.012 decade−1 for τd, which is however not reproduced by the CAM5 model. In other outflow regions strongly influenced by biomass burning smoke or dust, both MODIS retrievals and CAM5 simulations show no statistically significant trends; and the MODIS observed interannual variability is usually larger than that of the CAM5 simulation.

Description: Emissions and long-range transport of mineral dust and combustion-related aerosol from burning fossil fuels and biomass vary from year to year, driven by the evolution of the economy and changes in meteorological conditions and environmental regulations. This study offers both satellite and model perspectives on the interannual variability and possible trends of combustion aerosol and dust in major continental outflow regions over the past 15 years (2003–2017). The decade-long record of aerosol optical depth (AOD, denoted as τ), separately for combustion aerosol (τc) and dust (τd), over global oceans is derived from the Collection 6 aerosol products of the Moderate Resolution Imaging Spectroradiometer (MODIS) onboard both Terra and Aqua. These MODIS Aqua datasets, complemented by aerosol source-tagged simulations using the Community Atmospheric Model version 5 (CAM5), are then analyzed to understand the interannual variability and potential trends of τc and τd in the major continental outflows. Both MODIS and CAM5 consistently yield a similar decreasing trend of −0.017 to −0.020 per decade for τc over the North Atlantic Ocean and the Mediterranean Sea that is attributable to reduced emissions from North America and Europe, respectively. On the contrary, both MODIS and CAM5 display an increasing trend of +0.017 to +0.036 per decade for τc over the tropical Indian Ocean, the Bay of Bengal, and the Arabian Sea, which reflects the influence of increased anthropogenic emissions from South Asia and the Middle East in the last 2 decades. Over the northwestern Pacific Ocean, which is often affected by East Asian emissions of pollution and dust, the MODIS retrievals show a decreasing trend of −0.021 per decade for τc and −0.012 per decade for τd, which is, however, not reproduced by the CAM5 model. In other outflow regions strongly influenced by biomass burning smoke or dust, both MODIS retrievals and CAM5 simulations show no statistically significant trends; the MODIS-observed interannual variability is usually larger than that of the CAM5 simulation.

Description: Atmospheric sea salt plays important roles in marine cloud formation and atmospheric chemistry. We performed an integrated analysis of NASA GEOS model simulations run with the GOCART aerosol module, in situ measurements from the PALMS and SAGA instruments obtained during the NASA ATom campaign, and aerosol optical depth (AOD) measurements from AERONET Marine Aerosol Network (MAN) sun photometers and from MODIS satellite observations to better constrain sea salt in the marine atmosphere. ATom measurements and GEOS model simulation both show that sea salt concentrations over the Pacific and Atlantic oceans have a strong vertical gradient, varying up to four orders of magnitude from the marine boundary layer to free troposphere. The modeled residence times suggest that the lifetime of sea salt particles with dry diameter less than 3 μm is largely controlled by wet removal, followed next by turbulent process. During both boreal summer and winter, the GEOS simulated sea salt mass mixing ratios agree with SAGA measurements in the marine boundary layer (MBL) and with PALMS measurements above the MBL. However, comparison of AOD from GEOS with AERONET/MAN and MODIS aerosol retrievals indicated that the model underestimated AOD over the oceans where sea salt dominates. The apparent discrepancy of slightly overpredicted concentration and large underpredicted AOD could not be explained by biases in the model RH, which was found to be comparable to or larger than the in-situ measurements. This conundrum is at least partially explained by the sea salt size distribution; where the GEOS simulation has much less sea salt percentage-wise in the smaller particles than was observed by PALMS. Model sensitivity experiments indicated that the simulated sea salt is better correlated with measurements when the sea salt emission is calculated based on the friction velocity and with consideration of sea surface temperature dependence than that parameterized with the 10-m winds.

Description: In this study, we integrate recent aircraft measurements of dust microphysical and optical properties with satellite retrievals of aerosol and radiative fluxes to quantify the dust direct radiative effects on the shortwave (SW) and longwave (LW) radiation (denoted as DRESW and DRELW, respectively) at both the top of atmosphere (TOA) and surface in the tropical North Atlantic during summer months. Through linear regression of CERES measured TOA flux versus satellite aerosol optical depth (AOD) retrievals under cloud-free and dust-laden atmospheric conditions, we estimate the instantaneous DRESW efficiency at the top of the atmosphere (TOA) to be –49.7±7.1 W/m2/AOD and –36.5±4.8 W/m2/AOD based on AOD from MODIS and CALIOP, respectively. The corresponding DRESW at TOA is –14.2±2.0 W/m2 and –10.4±1.4 W/m2, respectively. We also estimate the instantaneous DRELW at TOA to be between +2.7±0.32 W/m2 to +3.4±0.32 W/m2 based on the difference between computed dust-free outgoing longwave radiation (OLR) and CERES-measured OLR. We then perform various sensitivity studies with recent measurements of dust particle size distribution (PSD), refractive index, and particle shape distribution to determine how the dust microphysical and optical properties affect DRE estimates and its agreement with abovementioned satellite-derived DREs. Our analysis shows that a good agreement with the observation-based estimates of instantaneous DRESW and DRELW can be achieved through a combination of recently observed PSD with substantial presence of coarse particles, a less absorptive SW refractive index, and spheroid shapes. Based on this optimal combination of dust physical and optical properties we further estimate the diurnal mean dust DRESW efficiency of –28 W/m2/AOD at TOA and –82 W/m2/AOD at surface. The corresponding TOA and surface DRESW in the region is approximately –10 W/m2 and –26 W/m2, respectively, of which ~30% is canceled out by the positive DRELW. This yields a net DRE of about –6.9 W/m2 and –18.3 W/m2 at TOA and surface, respectively. Our study suggests that the LW flux contains useful information of dust particle size, which could be used together with SW observation to achieve more holistic understanding of the dust radiative effect.

Description: The global source-receptor relationships of sulfate concentration, direct and indirect radiative forcing (DRF and IRF) from sixteen regions/sectors for years 2010–2014 are examined in this study through utilizing a sulfur source-tagging capability implemented in the Community Earth System Model (CESM) with winds nudged to reanalysis data. Sulfate concentrations are mostly contributed by local emissions in regions with high emissions, while over regions with relatively low SO2 emissions, the near-surface sulfate concentrations are primarily attributed to non-local sources from long-range transport. The export of SO2 and sulfate from Europe contributes 16–20 % of near-surface sulfate concentrations over North Africa, Russia/Belarus/Ukraine (RBU) region and Central Asia. Sources from the Middle East account for 15–24 % of sulfate over North Africa, Southern Africa and Central Asia in winter and autumn, and 19 % over South Asia in spring. Sources in RBU account for 21–42 % of sulfate concentrations over Central Asia. East Asia accounts for about 50 % of sulfate over Southeast Asia in winter and autumn, 15 % over RBU in summer, and 11 % over North America in spring. South Asia contributes to 11–24 % of sulfate over Southeast Asia in winter and spring. Regional source efficiencies of sulfate concentrations are higher over regions with dry atmospheric conditions and less export, suggesting that lifetime of aerosols, together with regional export, is important in determining regional air quality. The simulated global total sulfate DRF is −0.42 W m−2, with  0.31 W m−2 contributed by anthropogenic sulfate and −0.11 W m−2 contributed by natural sulfate, relative to a state with no sulfur emissions. In the Southern Hemisphere tropics, dimethyl sulfide (DMS) contributes 17–84 % to the total DRF. East Asia has the largest contribution of 20–30 % over the Northern Hemisphere mid- and high-latitudes. A 20 % perturbation of sulfate and its precursor emissions gives a sulfate incremental IRF of −0.44 W m−2. DMS has the largest contribution, explaining −0.23 W m−2 of the global sulfate incremental IRF. Incremental IRF over regions in the Southern Hemisphere with low background aerosols is more sensitive to emission perturbation than those over the polluted Northern Hemisphere.

Description: Atmospheric sea salt plays important roles in marine cloud formation and atmospheric chemistry. We performed an integrated analysis of NASA GEOS model simulations run with the GOCART aerosol module, in situ measurements from the PALMS and SAGA instruments obtained during the NASA ATom campaign, and aerosol optical depth (AOD) measurements from the AERONET Marine Aerosol Network (MAN) and from MODIS satellite observations to better constrain sea salt in the marine atmosphere. ATom measurements and GEOS model simulations both show that sea salt concentrations over the Pacific and Atlantic oceans have a strong vertical gradient, varying up to 4 orders of magnitude from the marine boundary layer to free troposphere. The modeled residence times suggest that the lifetime of sea salt particles with a dry diameter of less than 3 µm is largely controlled by wet removal, followed by turbulent process. During both boreal summer and winter, the GEOS-simulated sea salt mass mixing ratios agree with SAGA measurements in the marine boundary layer (MBL) and with PALMS measurements above the MBL. However, comparison of AOD from GEOS with AERONET/MAN and MODIS aerosol retrievals indicated that the model underestimated AOD over the oceans where sea salt dominates. The apparent discrepancy of slightly overpredicted concentration and large underpredicted AOD could not be explained by biases in the model RH affecting the particle hygroscopic growth, as modeled RH was found to be comparable to or larger than the in situ measurements. This conundrum could at least partially be explained by the difference in sea salt size distribution; the GEOS simulation has much less sea salt percentage-wise in the smaller particle size range and thus less efficient light extinction than what was observed by PALMS.