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  • 1
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    Genomic Analysis of an Ascomycete Fungus from the Rice Planthopper Reveals How It Adapts to an Endosymbiotic Lifestyle (2015)
    Oxford University Press
    Details
    Publication Date: 2015-09-24
    Description: A number of sap-sucking insects harbor endosymbionts, which are thought to play an important role in the development of their hosts. One of the most important rice pests, the brown planthopper (BPH), Nilaparvata lugens (Stål), harbors an obligatory yeast-like symbiont (YLS) that cannot be cultured in vitro. Genomic information on this YLS would be useful to better understand its evolution. In this study, we performed genome sequencing of the YLS using both 454 and Illumina approaches, generating a draft genome that shows a slightly smaller genome size and relatively higher GC content than most ascomycete fungi. A phylogenomic analysis of the YLS supported its close relationship with insect pathogens. We analyzed YLS-specific genes and the categories of genes that are likely to have changed in the YLS during its evolution. The loss of mating type locus demonstrated in the YLS sheds light on the evolution of eukaryotic symbionts. This information about the YLS genome provides a helpful guide for further understanding endosymbiotic associations in hemiptera and the symbiotic replacement of ancient bacteria with a multifunctional YLS seems to have been a successful change.
    Electronic ISSN: 1759-6653
    Topics: Biology
    Published by Oxford University Press
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  • 2
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    Analysis of collocation solutions for a class of functional equations with vanishing delays (2011)
    Oxford University Press
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    Publication Date: 2011-11-24
    Description: We study the existence, uniqueness and regularity properties of solutions for the functional equation y ( t ) = b ( t ) y ( ( t )) + f ( t ), t [0, T ], where the delay function ( t ) vanishes at t = 0. Functional equations corresponding to the linear delay function ( t ) = qt (0 〈 q 〈 1) represent an important special case. We then analyse the optimal order of convergence of piecewise polynomial collocation approximations to solutions of these functional equations. The theoretical results are illustrated by extensive numerical examples.
    Print ISSN: 0272-4979
    Electronic ISSN: 1464-3642
    Topics: Mathematics
    Published by Oxford University Press
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  • 3
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    Energy Dependence of SEP Electron and Proton Onset Times (2016)
    Wiley
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    Publication Date: 2016-07-19
    Description: We study the large solar energetic particle (SEP) events that were detected by GOES in the 〉 10 MeV energy channel during December 2006 to March 2014. We derive and compare solar particle release (SPR) times for the 0.25–10.4 MeV electrons and 10–100 MeV protons for the 28 SEP events. In the study, the electron SPR times are derived with the time-shifting analysis (TSA) and the proton SPR times are derived using both the TSA and the velocity dispersion analysis (VDA). Electron anisotropies are computed to evaluate the amount of scattering for the events under study. Our main results include: 1) near-relativistic electrons and high-energy protons are released at the same time within 8 min for most (16 of 23) SEP events. 2)There exists a good correlation between electron and proton acceleration, peak intensity and intensity time profiles. 3) The TSA SPR times for 90.5 MeV and 57.4 MeV protons have maximum errors of 6 min and 10 min compared to the proton VDA release times, respectively, while the maximum error for 15.4 MeV protons can reach to 32 min. 4) For 7 low-intensity events of the 23, large delays occurred between 6.5 MeV electrons and 90.5 MeV protons relative to 0.5 MeV electrons. Whether these delays are due to times needed for the evolving shock to be strengthened or due to particle transport effects remains unsolved.
    Print ISSN: 0148-0227
    Topics: Geosciences , Physics
    Published by Wiley on behalf of American Geophysical Union (AGU).
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  • 4
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    On the reduced geoeffectiveness of solar cycle 24: a moderate storm perspective (2016)
    Wiley
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    Publication Date: 2016-08-21
    Description: The moderate and intense geomagnetic storms are identified for the first 77 months of solar cycle 23 and 24. The solar sources responsible for the moderate geomagnetic storms are indentified during the same epoch for both the cycles. Solar cycle 24 has shown nearly 80 % reduction in the occurrence of intense storms where as it is only 40 % in case of moderate storms when compared to previous cycle. The solar and interplanetary characteristics of the moderate storms driven by CME are compared for solar cycle 23 and 24 in order to see reduction in geoeffectiveness has anything to do with the occurrence of moderate storm. Though there is reduction in the occurrence of moderate storms, the Dst distribution does not show much difference. Similarly the solar source parameters like CME speed, mass and width did not show any significant variation in the average values as well as the distribution. The correlation between VBz and Dst is determined and it is found to be moderate with value of 0.68 for cycle 23 and 0.61 for cycle 24. The magnetospheric energy flux parameter epsilon (Ɛ) is estimated during the main phase of all moderate storms during solar cycles 23 and 24. The energy transfer decreased in solar cycle 24 when compared to cycle 23. These results are significantly different when all geomagnetic storms are taken in to consideration for both the solar cycles.
    Print ISSN: 0148-0227
    Topics: Geosciences , Physics
    Published by Wiley on behalf of American Geophysical Union (AGU).
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  • 5
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    Functional interplay between the RK motif and linker segment dictates Oct4-DNA recognition (2015)
    Oxford University Press
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    Publication Date: 2015-05-20
    Description: The POU family transcription factor Oct4 plays pivotal roles in regulating pluripotency and somatic cell reprogramming. Previous studies have indicated an important role for major groove contacts in Oct4–DNA recognition; however, the contributions of the RK motif in the POUh domain and the linker segment joining the two DNA-binding domains remain poorly understood. Here, by combining molecular modelling and functional assays, we find that the RK motif is essential for Oct4–DNA association by recognizing the narrowed DNA minor groove. Intriguingly, computational simulations reveal that the function of the RK motif may be finely tuned by H-bond interactions with the partially disordered linker segment and that breaking these interactions significantly enhances the DNA binding and reprogramming activities of Oct4. These findings uncover a self-regulatory mechanism for specific Oct4–DNA recognition and provide insights into the functional crosstalk at the molecular level that may illuminate mechanistic studies of the Oct protein family and possibly transcription factors in the POU family. Our gain-of-function Oct4 mutants might also be useful tools for use in reprogramming and regenerative medicine.
    Print ISSN: 0305-1048
    Electronic ISSN: 1362-4962
    Topics: Biology
    Published by Oxford University Press
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  • 6
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    Hydrodynamics Characterization of an Ellipse Gate Impeller by Experimental and Numerical Studies (2012)
    Wiley
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    Publication Date: 2012-12-12
    Description: Hydrodynamics characteristics like flow pattern, shear rate distribution, power consumption, axial pumping capacity, mixing time, and mixing efficiency of an ellipse gate (EG) impeller were investigated by experimental and numerical methods. The numerical simulation results were validated by experimental data of power consumption and mixing time. Results indicate that the axial pumping number of the EG impeller is larger than that of any other reported large-scale impeller under laminar regime, and that the shear rate formed by this impeller is less sensitive to Reynolds numbers. In-depth analysis reveals the different function of each part of the EG impeller under different flow regimes. This impeller provides an almost similar mixing efficiency like the double-helical ribbon impeller under laminar regime, but much higher mixing efficiency both under transitional and turbulent flow regimes. An ellipse gate impeller was designed for fermentation processes with varying fluid viscosities in order to cover turbulent to transient or even laminar flow regimes in a reactor. Hydrodynamics characteristics were investigated by experimental and numerical methods, indicating excellent mixing properties of this impeller in a wide range of Reynolds numbers.
    Print ISSN: 0930-7516
    Electronic ISSN: 1521-4125
    Topics: Chemistry and Pharmacology , Process Engineering, Biotechnology, Nutrition Technology
    Published by Wiley
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  • 7
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    Properties and Geoeffectiveness of Magnetic Clouds during Solar Cycles 23 and 24 (2015)
    Wiley
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    Publication Date: 2015-10-06
    Description: We report on a study that compares the properties of magnetic clouds (MCs) during the first 73 months of solar cycles 23 and 24 in order to understand the weak geomagnetic activity in cycle 24. We find that the number of MCs did not decline in cycle 24, although the average sunspot number is known to have declined by ~40%. Despite the large number of MCs, their geoeffectiveness in cycle 24 was very low. The average Dst index in the sheath and cloud portions in cycle 24 was −33 nT and −23 nT, compared to −66 nT and −55 nT, respectively in cycle 23. One of the key outcomes of this investigation is that the reduction in the strength of geomagnetic storms as measured by the Dst index is a direct consequence of the reduction in the factor VB z (the product of the MC speed and the out-of-the-ecliptic component of the MC magnetic field). The reduction in MC-to-ambient total pressure in cycle 24 is compensated for by the reduction in the mean MC speed, resulting in the constancy of the dimensionless expansion rate at 1 AU. However, the MC size in cycle 24 was significantly smaller, which can be traced to the anomalous expansion of coronal mass ejections near the Sun reported by Gopalswamy et al. (2014a). One of the consequences of the anomalous expansion seems to be the larger heliocentric distance where the pressure balance between the CME flux ropes and the ambient medium occurs in cycle 24.
    Print ISSN: 0148-0227
    Topics: Geosciences , Physics
    Published by Wiley on behalf of American Geophysical Union (AGU).
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  • 8
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    Termination of Two-Dimensional Metallic Conduction near the Metal-Insulator Transition in a Si/SiGe Quantum Well (2011)
    American Physical Society (APS)
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    Publication Date: 2011-09-17
    Description: Author(s): T. M. Lu, W. Pan, D. C. Tsui, P. C. Liu, Z. Zhang, and Y. H. Xie We report in this Letter our recent low-temperature transport results in a Si/SiGe quantum well with moderate peak mobility. An apparent metal-insulating transition is observed. Within a small range of densities near the transition, the conductivity σ displays a nonmonotonic temperature dependence. ... [Phys. Rev. Lett. 107, 126403] Published Fri Sep 16, 2011
    Keywords: Condensed Matter: Electronic Properties, etc.
    Print ISSN: 0031-9007
    Electronic ISSN: 1079-7114
    Topics: Physics
    Published by American Physical Society (APS)
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  • 9
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    Relativistic birefringence induced by a high-intensity laser field in a plasma (2011)
    American Physical Society (APS)
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    Publication Date: 2011-03-03
    Description: Author(s): G. Tsaur, N.-H. Kang, Z.-H. Xie, S.-H. Chen, and J. Wang Field-induced birefringence, also known as cross-polarization wave generation, has played an important role in ultrafast nonlinear optics. In this paper we analyze birefringence induced by relativistic collective motion of electrons driven by a high-intensity laser field. An analytical expression fo... [Phys. Rev. A 83, 033801] Published Wed Mar 02, 2011
    Keywords: Quantum optics, physics of lasers, nonlinear optics, classical optics
    Print ISSN: 1050-2947
    Electronic ISSN: 1094-1622
    Topics: Physics
    Published by American Physical Society (APS)
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  • 10
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    The relation between coronal holes and coronal mass ejections during the rise, maximum, and declining phases of Solar Cycle 23 (2012)
    Wiley
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    Publication Date: 2012-01-11
    Description: We study the interaction between coronal holes (CHs) and coronal mass ejections (CMEs) using a resultant force exerted by all the coronal holes present on the disk and is defined as the coronal hole influence parameter (CHIP). The CHIP magnitude for each CH depends on the CH area, the distance between the CH centroid and the eruption region, and the average magnetic field within the CH at the photospheric level. The CHIP direction for each CH points from the CH centroid to the eruption region. We focus on Solar Cycle 23 CMEs originating from the disk center of the Sun (central meridian distance ≤15°) and resulting in magnetic clouds (MCs) and non-MCs in the solar wind. The CHIP is found to be the smallest during the rise phase for MCs and non-MCs. The maximum phase has the largest CHIP value (2.9 G) for non-MCs. The CHIP is the largest (5.8 G) for driverless (DL) shocks, which are shocks at 1 AU with no discernible MC or non-MC. These results suggest that the behavior of non-MCs is similar to that of the DL shocks and different from that of MCs. In other words, the CHs may deflect the CMEs away from the Sun-Earth line and force them to behave like limb CMEs with DL shocks. This finding supports the idea that all CMEs may be flux ropes if viewed from an appropriate vantage point.
    Print ISSN: 0148-0227
    Topics: Geosciences , Physics
    Published by Wiley on behalf of American Geophysical Union (AGU).
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