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  • American Physical Society  (36)
  • PANGAEA  (13)
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Keywords
  • 1
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    PANGAEA
    In:  Supplement to: Hong, Haizheng; Shen, Rong; Zhang, Futing; Wen, Zuozhu; Chang, Siwei; Lin, Wenfang; Kranz, Sven A; Luo, Ya-Wei; Kao, Shuh-Ji; Morel, Francois M M; Shi, Dalin (2017): The complex effects of ocean acidification on the prominent N2-fixing cyanobacterium Trichodesmium. Science, 356(6337), 527-531, https://doi.org/10.1126/science.aal2981
    Publication Date: 2023-04-07
    Description: Acidification of seawater caused by anthropogenic carbon dioxide (CO2) is anticipated to influence the growth of dinitrogen (N2)-fixing phytoplankton, which contribute a large fraction of primary production in the tropical and subtropical ocean. We found that growth and N2-fixation of the ubiquitous cyanobacterium Trichodesmium decreased under acidified conditions, notwithstanding a beneficial effect of high CO2. Acidification resulted in low cytosolic pH and reduced N2-fixation rates despite elevated nitrogenase concentrations. Low cytosolic pH required increased proton pumping across the thylakoid membrane and elevated adenosine triphosphate production. These requirements were not satisfied under field or experimental iron-limiting conditions, which greatly amplified the negative effect of acidification.
    Type: Dataset
    Format: application/zip, 6 datasets
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  • 2
    Publication Date: 2023-04-07
    Keywords: Carbon, inorganic, dissolved, half saturation concentration; Carbon, inorganic, dissolved, half saturation concentration, standard deviation; Growth rate; Growth rate, standard deviation; Iron protein of nitrogenase; Iron protein of nitrogenase, standard deviation; Nitrogen fixation rate, standard deviation; Nitrogen fixation rate per chlorophyll a; pH; pH, standard deviation; Treatment
    Type: Dataset
    Format: text/tab-separated-values, 44 data points
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  • 3
    Publication Date: 2023-04-07
    Keywords: Nitrogen fixation rate, standard deviation; Nitrogen fixation rate per chlorophyll a; Time in hours; Treatment
    Type: Dataset
    Format: text/tab-separated-values, 96 data points
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  • 4
    Publication Date: 2023-04-07
    Keywords: Name; Percentage; Station label
    Type: Dataset
    Format: text/tab-separated-values, 36 data points
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  • 5
    Publication Date: 2023-04-07
    Keywords: Gene copies; Gene copies, standard deviation; Nitrogen fixation rate; Nitrogen fixation rate, standard deviation; Station label; Treatment
    Type: Dataset
    Format: text/tab-separated-values, 34 data points
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  • 6
    Publication Date: 2023-04-07
    Keywords: Ammonium; Ethylenediaminetetraacetic acid; Growth rate; Growth rate, standard deviation; Iron; Nitrogen fixation rate, standard deviation; Nitrogen fixation rate per chlorophyll a; Treatment
    Type: Dataset
    Format: text/tab-separated-values, 112 data points
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  • 7
    Publication Date: 2023-07-10
    Keywords: Comment; Name; Protein name; Ratio; Ratio, standard deviation
    Type: Dataset
    Format: text/tab-separated-values, 189 data points
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  • 8
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    PANGAEA
    In:  Supplement to: Milligan, Allen J; Varela, Diana E; Brzezinski, Mark A; Morel, Francois M M (2004): Dynamics of silicon metabolism and silicon isotopic discrimination in a marine diatom as a function of pCO2. Limnology and Oceanography, 49(2), 322-329, https://doi.org/10.4319/lo.2004.49.2.0322
    Publication Date: 2024-03-15
    Description: Opal accumulation rates in sediments have been used as a proxy for carbon flux, but there is poor understanding of the factors that regulate the Si quota of diatoms. Natural variation in silicon isotopes (delta.lc.gif - 54 Bytes30Si) in diatom frustules recovered from sediment cores are an alternative to opal mass for reconstructing diatom Si use and potential C export over geological timescales. Understanding the physiological factors that may influence the Si quota and the delta.lc.gif - 54 Bytes30Si isotopic signal is vital for interpreting biogenic silica as a paleoproxy. We investigated the influence of pCO2 on the Si quota, fluxes across the cell membrane, and frustule dissolution in the marine diatom Thalassiosira weissflogii and determined the effect that pCO2 has on the isotopic fractionation of Si. We found that our Si flux estimates mass balance and, for the first time, describe the Si budget of a diatom. The Si quota rose in cells grown with low pCO2 (100 ppm) compared with controls (370 ppm), and the increased quota was the result of greater retention of Si (i.e., lower losses of Si through efflux and dissolution). The ratio of efflux : influx decreased twofold as pCO2 decreased from 750 to 100 ppm. The efflux of silicon is shown to significantly bias measurements of silica dissolution rates determined by isotope dilution, but no effect on the Si isotopic enrichment factor (epsilon.lc.gif - 51 Bytes) was observed. The latter effect suggests that silicon isotopic discrimination in diatoms is set by the Si transport step rather than by the polymerization step. This observation supports the use of the v signal of biogenic silica as an indicator of the percentage utilization of silicic acid.
    Keywords: Alkalinity, total; Aragonite saturation state; Bicarbonate ion; Biogenic silicate quota in diatom; Bottles or small containers/Aquaria (〈20 L); Calcite saturation state; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Chromista; Colorimetry; EPOCA; EUR-OCEANS; European network of excellence for Ocean Ecosystems Analysis; European Project on Ocean Acidification; Event label; EXP; Experiment; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Laboratory experiment; Laboratory strains; Measured; Milligan_etal_04/F2A; Milligan_etal_04/F2B; Milligan_etal_04/F5A; Not applicable; OA-ICC; Ocean Acidification International Coordination Centre; Ochrophyta; Other metabolic rates; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; pH; Phytoplankton; Radiation, photosynthetically active; Salinity; Silicate efflux in diatom; Silicate quota in diatom; Single species; Temperature, water; Thalassiosira weissflogii; Time in minutes
    Type: Dataset
    Format: text/tab-separated-values, 371 data points
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  • 9
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    PANGAEA
    In:  Supplement to: Hopkinson, Brian A; Xu, Yan; Shi, Dalin; McGinn, Patrick J; Morel, Francois M M (2010): The effect of CO2 on the photosynthetic physiology of phytoplankton in the Gulf of Alaska. Limnology and Oceanography, 55(5), 2011-2024, https://doi.org/10.4319/lo.2010.55.5.2011
    Publication Date: 2024-03-15
    Description: In the high-nutrient, low-chlorophyll waters of the Gulf of Alaska, microcosm manipulation experiments were used to assess the effect of CO2 on growth and primary production under iron-limited and iron-replete conditions. As expected, iron had a strong effect on growth and photosynthesis. A modest and variable stimulation of growth and biomass production by CO2 (high CO2: 77-122 Pa; low CO2: 11-17 Pa) was observed under both iron-replete and iron-limited conditions, though near the limit of precision of our measurements in slow-growing low-iron experiments. Physiological acclimations responsible for the changes in growth were assessed. Under iron-limited conditions, growth stimulation at high CO2 appeared to result from an increase in photosynthetic efficiency, which we attribute to energy savings from down-regulation of the carbon concentrating mechanisms. In some cases, iron-rich photosynthetic proteins (PsbA, PsaC, and cytochrome b6) were down-regulated at elevated CO2in iron-limited controls. Under iron-replete conditions, there was an increase in growth rate and biomass at high CO2 in some experiments. This increase was unexpectedly supported by reductions in cellular carbon loss, most likely decreased respiration. We speculate that this effect may be due to acclimation to decreased pH rather than high CO2. The variability in responses to CO2 among experiments did not appear to be caused by differences in phytoplankton community structure and may reflect the sensitivity of the net response of phytoplankton to antagonistic effects of the several parameters that co-vary with CO2.
    Keywords: 19-Butanoyloxyfucoxanthin; 19-Butanoyloxyfucoxanthin, standard deviation; 19-Hexanoyloxyfucoxanthin; 19-Hexanoyloxyfucoxanthin, standard deviation; Alkalinity, total; Aragonite saturation state; Bicarbonate ion; Biomass/Abundance/Elemental composition; Bottles or small containers/Aquaria (〈20 L); Calcite saturation state; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Chlorophyll a; Chlorophyll a, standard deviation; Chlorophyll b; Chlorophyll b, standard deviation; Colorimetry; Entire community; EPOCA; EUR-OCEANS; European network of excellence for Ocean Ecosystems Analysis; European Project on Ocean Acidification; Experimental treatment; Fluorometry; Fucoxanthin; Fucoxanthin, standard deviation; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); High Performance Liquid Chromatography (HPLC); Laboratory experiment; Micro-nutrients; Nitrate; North Pacific; OA-ICC; Ocean Acidification International Coordination Centre; Open ocean; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; pH; pH, standard deviation; pH meter (Oakton); Phosphate; Photosynthetic protein, cytochrome, b6f; Photosynthetic protein, cytochrome, b6f, standard deviation; Photosynthetic protein, PsbA, standard deviation; Photosynthetic protein, PsbC; Photosynthetic protein, PsbC, standard deviation; Photosynthetic protein PsbA; Salinity; see reference(s); Silicon; Temperate; Temperature, water; Time, incubation
    Type: Dataset
    Format: text/tab-separated-values, 1001 data points
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  • 10
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    PANGAEA
    In:  Supplement to: Goldman, Johanna A L; Bender, Michael L; Morel, Francois M M (2017): The effects of pH and pCO2 on photosynthesis and respiration in the diatom Thalassiosira weissflogii. Photosynthesis Research, 132(1), 83-93, https://doi.org/10.1007/s11120-016-0330-2
    Publication Date: 2024-03-15
    Description: The response of marine phytoplankton to the ongoing increase in atmospheric pCO2 reflects the consequences of both increased CO2 concentration and decreased pH in surface seawater. In the model diatom Thalassiosira weissflogii, we explored the effects of varying pCO2 and pH, independently and in concert, on photosynthesis and respiration by incubating samples in water enriched in H218O. In long-term experiments (6-h) at saturating light intensity, we observed no effects of pH or pCO2 on growth rate, photosynthesis or respiration. This absence of a measurable response reflects the very small change in energy used by the carbon concentrating mechanism (CCM) compared to the energy used in carbon fixation. In short-term experiments (3 min), we also observed no effects of pCO2 or pH, even under limiting light intensity. We surmise that in T. weissflogii, it is the photosynthetic production of NADPH and ATP, rather than the CO2-saturation of Rubisco that controls the rate of photosynthesis at low irradiance. In short-term experiments, we observed a slightly higher respiration rate at low pH at the onset of the dark period, possibly reflecting the energy used for exporting H+ and maintaining pH homeostasis. Based on what is known of the biochemistry of marine phytoplankton, our results are likely generalizable to other diatoms and a number of other eukaryotic species. The direct effects of ocean acidification on growth, photosynthesis and respiration in these organisms should be small over the range of atmospheric pCO2 predicted for the twenty-first century.
    Keywords: Alkalinity, total; Aragonite saturation state; Bicarbonate ion; Bottles or small containers/Aquaria (〈20 L); Calcite saturation state; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Cell density; Chromista; Error; Experiment; Experiment duration; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Gross photosynthesis rate, oxygen, per cell; Gross photosynthesis rate, oxygen, per chlorophyll a; Gross photosynthesis rate, standard deviation; Irradiance; Laboratory experiment; Laboratory strains; Light; Net photosynthesis rate, oxygen, per cell; Net photosynthesis rate, oxygen, per chlorophyll a; Net photosynthesis rate, standard deviation; Not applicable; OA-ICC; Ocean Acidification International Coordination Centre; Ochrophyta; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; pH; Phytoplankton; Primary production/Photosynthesis; Registration number of species; Replicate; Respiration; Respiration rate, oxygen, per chlorophyll a; Salinity; Single species; Species; Temperature, water; Thalassiosira weissflogii; Time in days; Type; Uniform resource locator/link to reference
    Type: Dataset
    Format: text/tab-separated-values, 3916 data points
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