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  • Quantum optics, physics of lasers, nonlinear optics, classical optics  (19)
  • Molecular Sequence Data  (17)
  • American Physical Society (APS)  (19)
  • Nature Publishing Group (NPG)  (17)
  • American Geophysical Union (AGU)
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  • 1
    Publication Date: 2008-10-10
    Description: Plasmodium knowlesi is an intracellular malaria parasite whose natural vertebrate host is Macaca fascicularis (the 'kra' monkey); however, it is now increasingly recognized as a significant cause of human malaria, particularly in southeast Asia. Plasmodium knowlesi was the first malaria parasite species in which antigenic variation was demonstrated, and it has a close phylogenetic relationship to Plasmodium vivax, the second most important species of human malaria parasite (reviewed in ref. 4). Despite their relatedness, there are important phenotypic differences between them, such as host blood cell preference, absence of a dormant liver stage or 'hypnozoite' in P. knowlesi, and length of the asexual cycle (reviewed in ref. 4). Here we present an analysis of the P. knowlesi (H strain, Pk1(A+) clone) nuclear genome sequence. This is the first monkey malaria parasite genome to be described, and it provides an opportunity for comparison with the recently completed P. vivax genome and other sequenced Plasmodium genomes. In contrast to other Plasmodium genomes, putative variant antigen families are dispersed throughout the genome and are associated with intrachromosomal telomere repeats. One of these families, the KIRs, contains sequences that collectively match over one-half of the host CD99 extracellular domain, which may represent an unusual form of molecular mimicry.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2656934/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2656934/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Pain, A -- Bohme, U -- Berry, A E -- Mungall, K -- Finn, R D -- Jackson, A P -- Mourier, T -- Mistry, J -- Pasini, E M -- Aslett, M A -- Balasubrammaniam, S -- Borgwardt, K -- Brooks, K -- Carret, C -- Carver, T J -- Cherevach, I -- Chillingworth, T -- Clark, T G -- Galinski, M R -- Hall, N -- Harper, D -- Harris, D -- Hauser, H -- Ivens, A -- Janssen, C S -- Keane, T -- Larke, N -- Lapp, S -- Marti, M -- Moule, S -- Meyer, I M -- Ormond, D -- Peters, N -- Sanders, M -- Sanders, S -- Sargeant, T J -- Simmonds, M -- Smith, F -- Squares, R -- Thurston, S -- Tivey, A R -- Walker, D -- White, B -- Zuiderwijk, E -- Churcher, C -- Quail, M A -- Cowman, A F -- Turner, C M R -- Rajandream, M A -- Kocken, C H M -- Thomas, A W -- Newbold, C I -- Barrell, B G -- Berriman, M -- 085775/Wellcome Trust/United Kingdom -- Wellcome Trust/United Kingdom -- England -- Nature. 2008 Oct 9;455(7214):799-803. doi: 10.1038/nature07306.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Wellcome Trust Sanger Institute, Genome Campus, Hinxton, Cambridgeshire CB10 1SA, UK. ap2@sanger.ac.uk〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18843368" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acid Sequence ; Animals ; Antigens, CD/chemistry/genetics ; Chromosomes/genetics ; Conserved Sequence ; Genes, Protozoan/genetics ; Genome, Protozoan/*genetics ; *Genomics ; Humans ; Macaca mulatta/*parasitology ; Malaria/*parasitology ; Molecular Sequence Data ; Plasmodium knowlesi/classification/*genetics/physiology ; Protein Structure, Tertiary ; Protozoan Proteins/chemistry/genetics ; Sequence Analysis, DNA ; Telomere/genetics
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 2
    Publication Date: 2016-05-12
    Description: Author(s): T. J. Milburn, M. S. Kim, and M. R. Vanner Nonclassical-state generation is an important component throughout experimental quantum science for quantum information applications and probing the fundamentals of physics. Here, we investigate permutations of quantum nondemolition quadrature measurements and single quanta addition or subtraction t… [Phys. Rev. A 93, 053818] Published Wed May 11, 2016
    Keywords: Quantum optics, physics of lasers, nonlinear optics, classical optics
    Print ISSN: 1050-2947
    Electronic ISSN: 1094-1622
    Topics: Physics
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  • 3
    Publication Date: 2016-04-01
    Description: Author(s): P. A. Knott, T. J. Proctor, A. J. Hayes, J. P. Cooling, and J. A. Dunningham Quantum metrology exploits quantum correlations to make precise measurements with limited particle numbers. By utilizing inter- and intramode correlations in an optical interferometer, we find a state that combines entanglement and squeezing to give a sevenfold enhancement in the quantum Fisher info… [Phys. Rev. A 93, 033859] Published Thu Mar 31, 2016
    Keywords: Quantum optics, physics of lasers, nonlinear optics, classical optics
    Print ISSN: 1050-2947
    Electronic ISSN: 1094-1622
    Topics: Physics
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  • 4
    Publication Date: 2011-06-25
    Description: Author(s): R. Rivière, S. Deléglise, S. Weis, E. Gavartin, O. Arcizet, A. Schliesser, and T. J. Kippenberg Cooling a mesoscopic mechanical oscillator to its quantum ground state is elementary for the preparation and control of quantum states of mechanical objects. Here, we pre-cool a 70-MHz micromechanical silica oscillator to an occupancy below 200 quanta by thermalizing it with a 600-mK cold 3 He gas. T... [Phys. Rev. A 83, 063835] Published Fri Jun 24, 2011
    Keywords: Quantum optics, physics of lasers, nonlinear optics, classical optics
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    Electronic ISSN: 1094-1622
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  • 5
    Publication Date: 2011-07-16
    Description: Author(s): J. Alnis, A. Schliesser, C. Y. Wang, J. Hofer, T. J. Kippenberg, and T. W. Hänsch We have stabilized an external cavity diode laser to a whispering gallery mode resonator formed by a protrusion of a single-crystal magnesium fluoride cylinder. The cylinder’s compact dimensions ( ≲1   cm 3 ) reduce the sensitivity to vibrations and simplify the stabilization of its temperature in a comp... [Phys. Rev. A 84, 011804] Published Fri Jul 15, 2011
    Keywords: Quantum optics, physics of lasers, nonlinear optics, classical optics
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    Electronic ISSN: 1094-1622
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  • 6
    Publication Date: 2011-04-06
    Description: Author(s): Carsten Brée, Ayhan Demircan, Jens Bethge, Erik T. J. Nibbering, Stefan Skupin, Luc Bergé, and Günter Steinmeyer Self-compression of multi-millijoule laser pulses during filamentary propagation is usually explained by the interplay of self-focusing and defocusing effects, causing a substantial concentration of energy on the axis of the propagating optical pulse. Recently, it has been argued that cell windows m... [Phys. Rev. A 83, 043803] Published Tue Apr 05, 2011
    Keywords: Quantum optics, physics of lasers, nonlinear optics, classical optics
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  • 7
    Publication Date: 2011-05-03
    Description: Author(s): T.-J. Wang, J.-F. Daigle, S. Yuan, F. Théberge, M. Châteauneuf, J. Dubois, G. Roy, H. Zeng, and S. L. Chin We experimentally investigated the dynamic behavior of remote terahertz (THz) generation from two-color femtosecond laser-induced filamentation in air. A record-high THz pulse energy of 570 nJ at frequency below 5.5 THz was measured by optimizing the pump parameters at a controllable remote distance... [Phys. Rev. A 83, 053801] Published Mon May 02, 2011
    Keywords: Quantum optics, physics of lasers, nonlinear optics, classical optics
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    Electronic ISSN: 1094-1622
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  • 8
    Publication Date: 2014-09-30
    Description: Author(s): P. A. Knott, T. J. Proctor, Kae Nemoto, J. A. Dunningham, and W. J. Munro In optical interferometry multimode entanglement is often assumed to be the driving force behind quantum enhanced measurements. Recent work has shown this assumption to be false: single-mode quantum states perform just as well as their multimode entangled counterparts. We go beyond this to show that... [Phys. Rev. A 90, 033846] Published Mon Sep 29, 2014
    Keywords: Quantum optics, physics of lasers, nonlinear optics, classical optics
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  • 9
    Publication Date: 2018-08-22
    Description: Author(s): N. R. Bernier, L. D. Tóth, A. K. Feofanov, and T. J. Kippenberg Level repulsion—the opening of a gap between two degenerate modes due to coupling—is ubiquitous anywhere from solid-state theory to quantum chemistry. In contrast, if one mode has negative energy, the mode frequencies attract instead. They converge and develop imaginary components, leading to an ins... [Phys. Rev. A 98, 023841] Published Tue Aug 21, 2018
    Keywords: Quantum optics, physics of lasers, nonlinear optics, classical optics
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  • 10
    Publication Date: 2008-06-13
    Description: Animals from flies to humans are able to distinguish subtle gradations in temperature and show strong temperature preferences. Animals move to environments of optimal temperature and some manipulate the temperature of their surroundings, as humans do using clothing and shelter. Despite the ubiquitous influence of environmental temperature on animal behaviour, the neural circuits and strategies through which animals select a preferred temperature remain largely unknown. Here we identify a small set of warmth-activated anterior cell (AC) neurons located in the Drosophila brain, the function of which is critical for preferred temperature selection. AC neuron activation occurs just above the fly's preferred temperature and depends on dTrpA1, an ion channel that functions as a molecular sensor of warmth. Flies that selectively express dTrpA1 in the AC neurons select normal temperatures, whereas flies in which dTrpA1 function is reduced or eliminated choose warmer temperatures. This internal warmth-sensing pathway promotes avoidance of slightly elevated temperatures and acts together with a distinct pathway for cold avoidance to set the fly's preferred temperature. Thus, flies select a preferred temperature by using a thermal sensing pathway tuned to trigger avoidance of temperatures that deviate even slightly from the preferred temperature. This provides a potentially general strategy for robustly selecting a narrow temperature range optimal for survival.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2730888/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2730888/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hamada, Fumika N -- Rosenzweig, Mark -- Kang, Kyeongjin -- Pulver, Stefan R -- Ghezzi, Alfredo -- Jegla, Timothy J -- Garrity, Paul A -- P01 NS044232/NS/NINDS NIH HHS/ -- P01 NS044232-060002/NS/NINDS NIH HHS/ -- P01 NS044232-070002/NS/NINDS NIH HHS/ -- P30 NS045713/NS/NINDS NIH HHS/ -- P30 NS045713-069006/NS/NINDS NIH HHS/ -- P30 NS045713S10/NS/NINDS NIH HHS/ -- R01 EY013874/EY/NEI NIH HHS/ -- R01 EY013874-06/EY/NEI NIH HHS/ -- R01 EY13874/EY/NEI NIH HHS/ -- R01 MH067284/MH/NIMH NIH HHS/ -- R01 MH067284-05/MH/NIMH NIH HHS/ -- RR16780/RR/NCRR NIH HHS/ -- England -- Nature. 2008 Jul 10;454(7201):217-20. doi: 10.1038/nature07001. Epub 2008 Jun 11.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉National Center for Behavioral Genomics, Volen Center for Complex Systems, Biology Department, Brandeis University MS-008, 415 South Street, Waltham, Massachusetts 02454, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18548007" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Avoidance Learning ; Body Temperature ; Choice Behavior/*physiology ; Drosophila Proteins/genetics/*metabolism ; Drosophila melanogaster/growth & development/*physiology ; Female ; Larva ; Molecular Sequence Data ; Neurons/metabolism ; Oocytes/metabolism ; TRPC Cation Channels/genetics/*metabolism ; *Temperature ; Xenopus laevis
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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