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  • 1
    Publication Date: 2011-11-24
    Description: The ammonia–water absorption cycle could transfer thermal energy into chemical energy by the change in solution concentration, which low-grade heat released by industry-concentrated areas could be utilized to provide heating or cooling in the user site over long distance. No heat insulation is required for the transportation pipelines and the energy consumption is reduced greatly. The simulation researches show that thermal coefficient of performance (COP) is at 0.5 and exergy efficiency is 〉0.2 when generation temperature is at 110°C to provide cooling in summer; thermal COP is at 0.6 and exergy efficiency is 〉0.3 to provide heating in winter. Electrical COP as high as 50 could be realized if the transportation distance is 〉50 km. Therefore, the COP of the system is determined by thermal COP (nearly equal). An experimental prototype has been built to testify this theory. Thermal COP is 0.43 when chilled water at 8°C is obtained in summer. In winter, thermal COP is 0.45 when hot water at 58°C is obtained. The deviations between experimental and simulation results are ~20%. The economic assessment based on the reasonable assumptions shows that the investment cost of the transportation pipelines of a 500 MW, 50 km system could be recovered within 15 months, in which the whole system costs could be recovered within 4 years.
    Print ISSN: 1748-1317
    Electronic ISSN: 1748-1325
    Topics: Energy, Environment Protection, Nuclear Power Engineering , Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
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  • 2
    Publication Date: 2015-06-02
    Description: To support the sustainable operation of wireless sensor networks using limited energy, duty cycling is a promising solution. However, it is a challenge to guarantee each node communicating with its neighbors under duty cycle when the network is asynchronous. The challenge becomes bigger when nodes’ duty cycles are required to be adjusted separately according to their demands to save energy and achieve high channel utilization. Existing low power listening- and contention-based protocols are not energy-efficient and cannot ensure high channel utility. Additionally, synchronization-based media access control (MAC) protocols suffer from extra energy consumption and low synchronization precision. This paper proposes a localized and on-demand (LOD) duty cycling scheme based on a specifically designed semi-quorum system. LOD can adjust duty cycle of each node adaptively according to its demand so as to avoid channel contention, consequently achieving high channel utilization. This allows the fairness for channel access within asynchronous sensor networks. Extensive experiments are conducted on a real test-bed of 100 TelosB nodes to evaluate the performance of LOD. As compared with B-MAC, LOD substantially reduces contention for channel access and the energy consumption, thus improving the network throughput significantly.
    Print ISSN: 0010-4620
    Electronic ISSN: 1460-2067
    Topics: Computer Science
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  • 3
    Publication Date: 2015-06-02
    Description: Mixed Polarity Reed-Muller (MPRM) logic draws more and more attention for its advantages over Boolean logic. This paper works on power optimization in logic synthesis for MPRM logic circuits. We present a power estimation model for MPRM logic circuits from a probabilistic point of view. A key feature of this technique is that it provides an accurate and efficient way to handle temporal signal correlations during estimation of average power by using lag-one Markov chains. Besides, an ordered binary decision diagrams-based procedure is used to propagate the temporal correlations from the primary inputs throughout the network. At last, this power estimation model is used in low power synthesis for MPRM logic circuits. This model has been evaluated in C language and a comparative analysis has been presented for many benchmark circuits. The results show that this model gives very good accuracy and does well in low power design for MPRM logic circuit.
    Print ISSN: 0010-4620
    Electronic ISSN: 1460-2067
    Topics: Computer Science
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  • 4
    Publication Date: 2013-09-08
    Description: Selectins and their carbohydrate ligands mediate the homing of hematopoietic stem/progenitor cells (HSPCs) to the bone marrow. We have previously shown that ex vivo fucosylation of selectin ligands on HSPCs by α1,3 fucosyltransferase VI (FUT6) leads to improved human cord blood (CB)-HSPC engraftment in non-obese diabetic (NOD)/severe combined immune deficient (SCID) mice. In the present study, we determined whether surface fucosylation with α1,3 fucosyltransferase VII (FUT7), which is primarily expressed by hematopoietic cells, improves the function of selectin ligands on CB-HSPCs in comparison with FUT6. A saturating amount of either FUT6 or FUT7, which generates comparable levels of expression of fucosylated epitopes on CB CD34 + cells, was used for these experiments. In vitro, FUT7-treated CB CD34 + cells exhibited greater binding to P- or E-selectin than that of FUT6-treated CB CD34 + cells under static or physiological flow conditions. In vivo, FUT7 treatment, like FUT6, improved the early engraftment of CB CD34 + cells in the bone marrow of sublethally irradiated NOD/SCID interleukin (IL)-2R null (NSG) mice. FUT7 also exhibited marginally—yet statistically significant—increased engraftment at 4 and 6 weeks after transplantation. In addition, FUT7-treated CB CD34 + cells exhibited increased homing to the bone marrow of irradiated NSG mice relative to sham-treated cells. These data indicate that FUT7 is effective at improving the function of selectin ligands on CB-HSPCs in vitro and enhancing early engraftment of treated CB-HSPCs in the bone marrow of recipients.
    Print ISSN: 0959-6658
    Electronic ISSN: 1460-2423
    Topics: Biology , Medicine
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  • 5
    Publication Date: 2000-11-01
    Print ISSN: 0024-9297
    Electronic ISSN: 1520-5835
    Topics: Chemistry and Pharmacology , Physics
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  • 6
    Publication Date: 2016-09-12
    Description: Motivation: Prediction and prioritization of human non-coding regulatory variants is critical for understanding the regulatory mechanisms of disease pathogenesis and promoting personalized medicine. Existing tools utilize functional genomics data and evolutionary information to evaluate the pathogenicity or regulatory functions of non-coding variants. However, different algorithms lead to inconsistent and even conflicting predictions. Combining multiple methods may increase accuracy in regulatory variant prediction. Results: Here, we compiled an integrative resource for predictions from eight different tools on functional annotation of non-coding variants. We further developed a composite strategy to integrate multiple predictions and computed the composite likelihood of a given variant being regulatory variant. Benchmarked by multiple independent causal variants datasets, we demonstrated that our composite model significantly improves the prediction performance. Availability and Implementation: We implemented our model and scoring procedure as a tool, named PRVCS, which is freely available to academic and non-profit usage at http://jjwanglab.org/PRVCS . Contact: wang.junwen@mayo.edu , jliu@stat.harvard.edu , or limx54@gmail.com Supplementary information: Supplementary data are available at Bioinformatics online.
    Print ISSN: 1367-4803
    Electronic ISSN: 1460-2059
    Topics: Biology , Computer Science , Medicine
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  • 7
    Publication Date: 2015-05-24
    Description: Nonparametric regression analysis when the regression function is discontinuous has many applications. Existing methods for estimating a discontinuous regression curve usually assume that the number of jumps in the regression curve is known beforehand, which is unrealistic in some situations. Although there has been research on estimation of a discontinuous regression curve when the number of jumps is unknown, the problem remains mostly open because such research often requires assumptions on other related quantities, such as a known minimum jump size. In this paper we propose a jump information criterion which consists of a term measuring the fidelity of the estimated regression curve to the observed data and a penalty related to the number of jumps and the jump sizes. The number of jumps can then be determined by minimizing our criterion. Theoretical and numerical studies show that our method works well.
    Print ISSN: 0006-3444
    Electronic ISSN: 1464-3510
    Topics: Biology , Mathematics , Medicine
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  • 8
    Publication Date: 2015-04-23
    Description: Mitochondrial complex I (NADH dehydrogenase) is a major contributor to neuronal energetics, and mutations in complex I lead to vision loss. Functional, neuroanatomical and transcriptional consequences of complex I deficiency were investigated in retinas of the Ndufs4 knockout mouse. Whole-eye ERGs and multielectrode arrays confirmed a major retinal ganglion cell functional loss at P32, and retinal ganglion cell loss at P42. RNAseq demonstrated a mild and then sharp increase in innate immune and inflammatory retinal transcripts at P22 and P33, respectively, which were confirmed with QRT-PCR. Intraperitoneal injection of the inflammogen lipopolysaccharide further reduced retinal ganglion cell function in Ndufs4 KO, supporting the connection between inflammatory activation and functional loss. Complex I deficiency in the retina clearly caused innate immune and inflammatory markers to increase coincident with loss of vision, and RGC functional loss. How complex I incites inflammation and functional loss is not clear, but could be the result of misfolded complex I generating a ‘non-self’ response, and induction of innate immune response transcripts was observed before functional loss at P22, including β-2 microglobulin and Cx3cr1, and during vision loss at P31 (B2m, Tlr 2, 3, 4, C1qa, Cx3cr1 and Fas). These data support the hypothesis that mitochondrial complex I dysfunction in the retina triggers an innate immune and inflammatory response that results in loss of retinal ganglion cell function and death, as in Leber's hereditary Optic Neuropathy and suggests novel therapeutic routes to counter mitochondrial defects that contribute to vision loss.
    Print ISSN: 0964-6906
    Electronic ISSN: 1460-2083
    Topics: Biology , Medicine
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  • 9
    Publication Date: 2013-06-23
    Description: Interpreting the genetic variants located in the regulatory regions, such as enhancers and promoters, is an indispensable step to understand molecular mechanism of complex traits. Recent studies show that genetic variants detected by genome-wide association study (GWAS) are significantly enriched in the regulatory regions. Therefore, detecting, annotating and prioritizing of genetic variants affecting gene regulation are critical to our understanding of genotype–phenotype relationships. Here, we developed a web server GWAS3D to systematically analyze the genetic variants that could affect regulatory elements, by integrating annotations from cell type-specific chromatin states, epigenetic modifications, sequence motifs and cross-species conservation. The regulatory elements are inferred from the genome-wide chromosome interaction data, chromatin marks in 16 different cell types and 73 regulatory factors motifs from the Encyclopedia of DNA Element project. Furthermore, we used these function elements, as well as risk haplotype, binding affinity, conservation and P -values reported from the original GWAS to reprioritize the genetic variants. Using studies from low-density lipoprotein cholesterol, we demonstrated that our reprioritizing approach was effective and cell type specific. In conclusion, GWAS3D provides a comprehensive annotation and visualization tool to help users interpreting their results. The web server is freely available at http://jjwanglab.org/gwas3d .
    Print ISSN: 0305-1048
    Electronic ISSN: 1362-4962
    Topics: Biology
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  • 10
    Publication Date: 2013-04-14
    Description: Multiplex analytical systems that allow detection of multiple nucleic acid targets in one assay can provide rapid characterization of a sample while still saving cost and resources. However, few systems have proven to offer a solution for mid-plex (e.g. 10- to 50-plex) analysis that is high throughput and cost effective. Here we describe the combined use of fluorescence color and melting temperature (T m ) as a virtual 2D label that enables homogenous detection of one order of magnitude more targets than current strategies on real-time polymerase chain reaction platform. The target was first hybridized with a pair of ligation oligonucleotides, one of which harbored an artificial sequence that had a unique T m when hybridized with a reporter fluorogenic probe. The ligated products were then amplified by a universal primer pair and denatured by a melting curve analysis procedure. The targets were identified by their respective T m values in the corresponding fluorescence detection channels. The proof-of-principle of this approach was validated by genotyping 15 high-risk human papillomaviruses and 48 human single-nucleotide polymorphisms. The robustness of this method was demonstrated by analyzing a large number of clinical samples in both cases. The combined merits of multiplexity, flexibility and simplicity should make this approach suitable for a variety of applications.
    Keywords: Genomics
    Print ISSN: 0305-1048
    Electronic ISSN: 1362-4962
    Topics: Biology
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