ALBERT

Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Farrell, U. C., Samawi, R., Anjanappa, S., Klykov, R., Adeboye, O. O., Agic, H., Ahm, A.-S. C., Boag, T. H., Bowyer, F., Brocks, J. J., Brunoir, T. N., Canfield, D. E., Chen, X., Cheng, M., Clarkson, M. O., Cole, D. B., Cordie, D. R., Crockford, P. W., Cui, H., Dahl, T. W., Mouro, L. D., Dewing, K., Dornbos, S. Q., Drabon, N., Dumoulin, J. A., Emmings, J. F., Endriga, C. R., Fraser, T. A., Gaines, R. R., Gaschnig, R. M., Gibson, T. M., Gilleaudeau, G. J., Gill, B. C., Goldberg, K., Guilbaud, R., Halverson, G. P., Hammarlund, E. U., Hantsoo, K. G., Henderson, M. A., Hodgskiss, M. S. W., Horner, Tristan J., Husson, J. M., Johnson, B., Kabanov, P., Brenhin K. C., Kimmig, J., Kipp, M. A., Knoll, A. H., Kreitsmann, T., Kunzmann, M., Kurzweil, F., LeRoy, M. A., Li, C., Lipp, A. G., Loydell, D. K., Lu, X., Macdonald, F. A., Magnall, J. M., Mänd, K., Mehra, A., Melchin, M. J., Miller, A. J., Mills, N. T., Mwinde, C. N., O'Connell, B., Och, L. M., Ossa Ossa, F., Pagès, A., Paiste, K., Partin, C. A., Peters, S. E., Petrov, P., Playter, T. L., Plaza-Torres, S., Porter, Susannah M., Poulton, S. W., Pruss, S. B., Richoz, S., Ritzer, S. R., Rooney, A. D., Sahoo, S. K., Schoepfer, S. D., Sclafani, J. A., Shen, Y., Shorttle, O., Slotznick, S. P., Smith, E. F., Spinks, S., Stockey, R. G., Strauss, J. V., Stüeken, E. E., Tecklenburg, S., Thomson, D., Tosca, N. J., Uhlein, G. J., Vizcaíno, M. N., Wang, H., White, T., Wilby, P. R., Woltz, C. R., Wood, R. A., Xiang, L., Yurchenko, I. A., Zhang, T., Planavsky, N. J., Lau, K. V., Johnston, D. T., Sperling, E. A., The Sedimentary Geochemistry and Paleoenvironments Project. Geobiology. 00, (2021): 1– 12,https://doi.org/10.1111/gbi.12462.

Description: Geobiology explores how Earth's system has changed over the course of geologic history and how living organisms on this planet are impacted by or are indeed causing these changes. For decades, geologists, paleontologists, and geochemists have generated data to investigate these topics. Foundational efforts in sedimentary geochemistry utilized spreadsheets for data storage and analysis, suitable for several thousand samples, but not practical or scalable for larger, more complex datasets. As results have accumulated, researchers have increasingly gravitated toward larger compilations and statistical tools. New data frameworks have become necessary to handle larger sample sets and encourage more sophisticated or even standardized statistical analyses. In this paper, we describe the Sedimentary Geochemistry and Paleoenvironments Project (SGP; Figure 1), which is an open, community-oriented, database-driven research consortium. The goals of SGP are to (1) create a relational database tailored to the needs of the deep-time (millions to billions of years) sedimentary geochemical research community, including assembling and curating published and associated unpublished data; (2) create a website where data can be retrieved in a flexible way; and (3) build a collaborative consortium where researchers are incentivized to contribute data by giving them priority access and the opportunity to work on exciting questions in group papers. Finally, and more idealistically, the goal was to establish a culture of modern data management and data analysis in sedimentary geochemistry. Relative to many other fields, the main emphasis in our field has been on instrument measurement of sedimentary geochemical data rather than data analysis (compared with fields like ecology, for instance, where the post-experiment ANOVA (analysis of variance) is customary). Thus, the longer-term goal was to build a collaborative environment where geobiologists and geologists can work and learn together to assess changes in geochemical signatures through Earth history.

Description: We thank the donors of The American Chemical Society Petroleum Research Fund for partial support of SGP website development (61017-ND2). EAS is funded by National Science Foundation grant (NSF) EAR-1922966. BGS authors (JE, PW) publish with permission of the Executive Director of the British Geological Survey, UKRI.

Description: 〈p〉Many drug candidates fail therapeutic development because of poor aqueous solubility. We have conceived a computer-aided strategy to enable polymeric micelle-based delivery of poorly soluble drugs. We built models predicting both drug loading efficiency (LE) and loading capacity (LC) using novel descriptors of drug-polymer complexes. These models were employed for virtual screening of drug libraries, and eight drugs predicted to have either high LE and high LC or low LE and low LC were selected. Three putative positives, as well as three putative negative hits, were confirmed experimentally (implying 75% prediction accuracy). Fortuitously, simvastatin, a putative negative hit, was found to have the desired micelle solubility. Podophyllotoxin and simvastatin (LE of 95% and 87% and LC of 43% and 41%, respectively) were among the top five polymeric micelle-soluble compounds ever studied experimentally. The success of the strategy described herein suggests its broad utility for designing drug delivery systems.〈/p〉

Description: 〈span〉〈div〉Abstract〈/div〉At least four horizons of enhanced anoxia (anoxic horizons; AHs) are recognized in the uppermost Eifelian–Middle Frasnian mudrock-dominated strata of the Mackenzie Valley and Peel area of NW Canada. Aluminium-normalized Mo and U logs in two cored sections reveal AH-I at the Eifelian–Givetian boundary, AH-II in basal Frasnian, and AH-III and AH-IV bundled in the Middle Frasnian interval. These four horizons are characterized by attenuated siliciclastic components. Spectral gamma-ray K + Th and U are the best tools to trace these horizons in wells and outcrops. AHs are biostratigraphically correlated with ‘black-shale events’ in several basins of the world. Depositional environment is depicted as a stratified basin where the water-column chemocline defined co-sedimentation of anoxic mudrocks in topographic lows and oxic grey shales and carbonate banks on seafloor elevations. Based on inductively coupled plasma elemental data from 1687 samples, siliciclastic-lean basinal mudrock units that host AHs are strongly enriched in Mo (median EFMo ∼ 97–172 EFMo/EFU ≈ (3–3.5) × SW, where EFMo and EFU are respectively Al-normalized Mo and U in enrichment factor notation and SW is average present-day seawater value) compared with siliciclastic-rich units (median EFMo ∼ 17–37) and show strong EFU/EFMo covariation (〈span〉r〈/span〉 ≈ 0.8 in Canol Formation and Bluefish Member). Supported by a lack of geological evidence for an oceanographic barrier, this enrichment indicates unrestricted water exchange with Panthalassa. At the same time, development of oligotrophy is indicated by a lack of P enrichment and weak to non-existent enrichment in Zn and Cu. These features are reconciled through a model by earlier workers that involves a global shift to a warm greenhouse mode with slowed oceanic convection, expanded oxygen minimum zones and a failure of nutrient resupply from the upwelling. The onset of mass degassing in continental large igneous provinces represents a potential trigger for this mid-Devonian shift. Devonian black-shale events in this scenario represent genuine oceanic anoxic events marking hothouse episodes in their nascent form.〈strong〉Supplementary material:〈/strong〉 Details of methods, analytical protocols and data scatterplots, stratigraphic cross-sections showing traceability of anoxic horizons, and inductively coupled plasma elemental and Rock-Eval 6 data used in this study are available at: 〈a href="https://doi.org/10.6084/m9.figshare.c.4212428"〉https://doi.org/10.6084/m9.figshare.c.4212428〈/a〉〈/span〉

Description: 〈span〉〈div〉Abstract〈/div〉At least four horizons of enhanced anoxia (anoxic horizons; AHs) are recognized in the uppermost Eifelian–Middle Frasnian mudrock-dominated strata of the Mackenzie Valley and Peel area of NW Canada. Aluminium-normalized Mo and U logs in two cored sections reveal AH-I at the Eifelian–Givetian boundary, AH-II in basal Frasnian, and AH-III and AH-IV bundled in the Middle Frasnian interval. These four horizons are characterized by attenuated siliciclastic components. Spectral gamma-ray K + Th and U are the best tools to trace these horizons in wells and outcrops. AHs are biostratigraphically correlated with ‘black-shale events’ in several basins of the world. Depositional environment is depicted as a stratified basin where the water-column chemocline defined co-sedimentation of anoxic mudrocks in topographic lows and oxic grey shales and carbonate banks on seafloor elevations. Based on inductively coupled plasma elemental data from 1687 samples, siliciclastic-lean basinal mudrock units that host AHs are strongly enriched in Mo (median EFMo ∼ 97–172 EFMo/EFU ≈ (3–3.5) × SW, where EFMo and EFU are respectively Al-normalized Mo and U in enrichment factor notation and SW is average present-day seawater value) compared with siliciclastic-rich units (median EFMo ∼ 17–37) and show strong EFU/EFMo covariation (〈span〉r〈/span〉 ≈ 0.8 in Canol Formation and Bluefish Member). Supported by a lack of geological evidence for an oceanographic barrier, this enrichment indicates unrestricted water exchange with Panthalassa. At the same time, development of oligotrophy is indicated by a lack of P enrichment and weak to non-existent enrichment in Zn and Cu. These features are reconciled through a model by earlier workers that involves a global shift to a warm greenhouse mode with slowed oceanic convection, expanded oxygen minimum zones and a failure of nutrient resupply from the upwelling. The onset of mass degassing in continental large igneous provinces represents a potential trigger for this mid-Devonian shift. Devonian black-shale events in this scenario represent genuine oceanic anoxic events marking hothouse episodes in their nascent form.〈strong〉Supplementary material:〈/strong〉 Details of methods, analytical protocols and data scatterplots, stratigraphic cross-sections showing traceability of anoxic horizons, and inductively coupled plasma elemental and Rock-Eval 6 data used in this study are available at: 〈a href="https://doi.org/10.6084/m9.figshare.c.4212428"〉https://doi.org/10.6084/m9.figshare.c.4212428〈/a〉〈/span〉

Description: Optical control of states exhibiting macroscopic phase coherence in condensed matter systems opens intriguing possibilities for materials and device engineering, including optically controlled qubits and photoinduced superconductivity. Metastable states, which in bulk materials are often associated with the formation of topological defects, are of more practical interest. Scaling to nanosize leads to reduced dimensionality, fundamentally changing the system’s properties. In one-dimensional superconducting nanowires, vortices that are present in three-dimensional systems are replaced by fluctuating topological defects of the phase. These drastically change the dynamical behavior of the superconductor and introduce dynamical periodic long-range ordered states when the current is driven through the wire. We report the control and manipulation of transitions between different dynamically stable states in superconducting 3 -MoN nanowire circuits by ultrashort laser pulses. Not only can the transitions between different dynamically stable states be precisely controlled by light, but we also discovered new photoinduced hidden states that cannot be reached under near-equilibrium conditions, created while laser photoexcited quasi-particles are outside the equilibrium condition. The observed switching behavior can be understood in terms of dynamical stabilization of various spatiotemporal periodic trajectories of the order parameter in the superconductor nanowire, providing means for the optical control of the superconducting phase with subpicosecond control of timing.

Description: Synthesis of gold nanoparticles (GNP) by reacting chloroauric acid (HAuCl4) and Pluronic F127 was thoroughly investigated. The rate of reduction of HAuCl4 and the yield and morphology of GNP strongly depended on the concentration of the reactants and sodium chloride, as well as pH and temperature. Upon completion of the reaction heterogeneous mixtures of small GNP of defined shape and Pluronic aggregates were formed. GNP were separated from the excess of Pluronic by centrifugal filtration. Under optimized conditions the GNP were small (ca. 80 nm), uniform (PDI ~0.09), strongly negatively charged (ζ-potential −30 mV) and nearly spherical. They were stable in distilled water and phosphate-buffered saline. Purified GNP contained ~13% by weight of an organic component, yet presence of polypropylene oxide was not detected suggesting that Pluronic was not adsorbed on their surface. Analysis of the soluble products suggested that the copolymer undergoes partial degradation accompanied by cleavage of the C–O bonds and appearance of new primary hydroxyl groups. The reaction involves formation of free radicals and hydroperoxides depends on the oxygen concentration. GNP did not form at 4 °C when the micellization of Pluronic was abolished reinforcing the role of the copolymer self-assembly. In conclusion, this work provides insight into the mechanism of HAuCl4 reduction and GNP formation in the presence of Pluronic block copolymers. It is useful for improving the methods of manufacturing uniform and pure GNP that are needed as nanoscale building blocks in nanomedicine applications.

Description: Silver nanoparticles (AgNPs) have recently become very attractive for the scientific community due to their broad spectrum of applications in the biomedical field. The main advantages of AgNPs include a simple method of synthesis, a simple way to change their morphology and high surface area to volume ratio. Much research has been carried out over the years to evaluate their possible effectivity against microbial organisms. The most important factors which influence the effectivity of AgNPs against microorganisms are the method of their preparation and the type of application. When incorporated into fabric wound dressings and other textiles, AgNPs have shown significant antibacterial activity against both Gram-positive and Gram-negative bacteria and inhibited biofilm formation. In this review, the different routes of synthesizing AgNPs with controlled size and geometry including chemical, green, irradiation and thermal synthesis, as well as the different types of application of AgNPs for wound dressings such as membrane immobilization, topical application, preparation of nanofibers and hydrogels, and the mechanism behind their antimicrobial activity, have been discussed elaborately.

Description: Normally ubiquitin C-terminal hydrolase L1 (UCH-L1) is expressed in the central nervous and reproductive systems of adults, but its de novo expression has been detected in many human cancers. There is a growing body of evidence that UCH-L1 de-ubiquitinating (DUB) activity plays a major pro-metastatic role in certain carcinomas. Here we tested anti-metastatic effects of the small-molecule inhibitor of UCH-L1 DUB activity, LDN-57444, in cell lines from advanced oral squamous cell carcinoma (OSCC) as well as invasive nasopharyngeal (NP) cell lines expressing the major pro-metastatic gene product of Epstein–Barr virus (EBV) tumor virus, LMP1. To overcome the limited aqueous solubility of LDN-57444 we developed a nanoparticle formulation of LDN-57444 by incorporation of the compound in polyoxazoline micellear nanoparticles (LDN-POx). LDN-POx nanoparticles were equal in effects as the native compound in vitro. Our results demonstrate that inhibition of UCH-L1 DUB activity with LDN or LDN-POx inhibits secretion of exosomes and reduces levels of the pro-metastatic factor in exosomal fractions. Both forms of UCH-L1 DUB inhibitor suppress motility of metastatic squamous carcinoma cells as well as nasopharyngeal cells expressing EBV pro-metastatic Latent membrane protein 1 (LMP1) in physiological assays. Moreover, treatment with LDN and LDN-POx resulted in reduced levels of pro-metastatic markers, a decrease of carcinoma cell adhesion, as well as inhibition of extra-cellular vesicle (ECV)-mediated transfer of viral invasive factor LMP1. We suggest that soluble inhibitors of UCH-L1 such as LDN-POx offer potential forms of treatment for invasive carcinomas including EBV-positive malignancies.