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Shifting the limits in wheat research and breeding using a fully annotated reference genome (2018)

The International Wheat Genome Sequencing Consortium (IWGSC), IWGSC Ref; Seq principal investigators:, Appels, R., Eversole, K., Feuillet, C., Keller, B., Rogers, J., Stein, N., IWGSC whole-genome assembly principal investigators:, Pozniak, C. J., Stein, N., Choulet, F., Distelfeld, A., Eversole, K., Poland, J., Rogers, J., Ronen, G., Sharpe, A. G., Whole-genome sequencing and assembly:, Pozniak, C., Ronen, G., Stein, N., Barad, O., Baruch, K., Choulet, F., Keeble-Gagnere, G., Mascher, M., Sharpe, A. G., Ben-Zvi, G., Josselin, A.-A., Hi-C data-based scaffolding:, Stein, N., Mascher, M., Himmelbach, A., Whole-genome assembly quality control and analyses:, Choulet, F., Keeble-Gagnere, G., Mascher, M., Rogers, J., Balfourier, F., Gutierrez-Gonzalez, J., Hayden, M., Josselin, A.-A., Koh, C., Muehlbauer, G., Pasam, R. K., Paux, E., Pozniak, C. J., Rigault, P., Sharpe, A. G., Tibbits, J., Tiwari, V., Pseudomolecule assembly:, Choulet, F., Keeble-Gagnere, G., Mascher, M., Josselin, A.-A., Rogers, J., Ref; Seq genome structure and gene analyses:, Spannagl, M., Choulet, F., Lang, D., Gundlach, H., Haberer, G., Keeble-Gagnere, G., Mayer, K. F. X., Ormanbekova, D., Paux, E., Prade, V., Simkova, H., Wicker, T., Automated annotation:, Choulet, F., Spannagl, M., Swarbreck, D., Rimbert, H., Felder, M., Guilhot, N., Gundlach, H., Haberer, G., Kaithakottil, G., Keilwagen, J., Lang, D., Leroy, P., Lux, T., Mayer, K. F. X., Twardziok, S., Venturini, L., Manual gene curation:, Appels, R., Rimbert, H., Choulet, F., Juhasz, A., Keeble-Gagnere, G., Subgenome comparative analyses:, Choulet, F., Spannagl, M., Lang, D., Abrouk, M., Haberer, G., Keeble-Gagnere, G., Mayer, K. F. X., Wicker, T., Transposable elements:, Choulet, F., Wicker, T., Gundlach, H., Lang, D., Spannagl, M., Phylogenomic analyses:, Lang, D., Spannagl, M., Appels, R., Fischer, I., Transcriptome analyses and RNA-seq data:, Uauy, C., Borrill, P., Ramirez-Gonzalez, R. H., Appels, R., Arnaud, D., Chalabi, S., Chalhoub, B., Choulet, F., Cory, A., Datla, R., Davey, M. W., Hayden, M., Jacobs, J., Lang, D., Robinson, S. J., Spannagl, M., Steuernagel, B., Tibbits, J., Tiwari, V., van Ex, F., Wulff, B. B. H., Whole-genome methylome:, Pozniak, C. J., Robinson, S. J., Sharpe, A. G., Cory, A., Histone mark analyses:, Benhamed, M., Paux, E., Bendahmane, A., Concia, L., Latrasse, D., BAC chromosome MTP IWGSC-Bayer Whole-Genome Profiling (WGP) tags:, Rogers, J., Jacobs, J., Alaux, M., Appels, R., Bartos, J., Bellec, A., Berges, H., Dolezel, J., Feuillet, C., Frenkel, Z., Gill, B., Korol, A., Letellier, T., Olsen, O.-A., Simkova, H., Singh, K., Valarik, M., van der Vossen, E., Vautrin, S., Weining, S., Chromosome LTC mapping and physical mapping quality control:, Korol, A., Frenkel, Z., Fahima, T., Glikson, V., Raats, D., Rogers, J., RH mapping:, Tiwari, V., Gill, B., Paux, E., Poland, J., Optical mapping:, Dolezel, J., Cihalikova, J., Simkova, H., Toegelova, H., Vrana, J., Recombination analyses:, Sourdille, P., Darrier, B., Gene family analyses:, Appels, R., Spannagl, M., Lang, D., Fischer, I., Ormanbekova, D., Prade, V., CBF gene family:, Barabaschi, D., Cattivelli, L., Dehydrin gene family:, Hernandez, P., Galvez, S., Budak, H., NLR gene family:, Steuernagel, B., Jones, J. D. G., Witek, K., Wulff, B. B. H., Yu, G., PPR gene family:, Small, I., Melonek, J., Zhou, R., Prolamin gene family:, Juhasz, A., Belova, T., Appels, R., Olsen, O.-A., WAK gene family:, Kanyuka, K., King, R., Stem solidness (SSt1) QTL team:, Nilsen, K., Walkowiak, S., Pozniak, C. J., Cuthbert, R., Datla, R., Knox, R., Wiebe, K., Xiang, D., Flowering locus C (FLC) gene team:, Rohde, A., Golds, T., Genome size analysis:, Dolezel, J., Cizkova, J., Tibbits, J., Micro; RNA and t; RNA annotation:, Budak, H., Akpinar, B. A., Biyiklioglu, S., Genetic maps and mapping:, Muehlbauer, G., Poland, J., Gao, L., Gutierrez-Gonzalez, J., NDaiye, A., BAC libraries and chromosome sorting:, Dolezel, J., Simkova, H., Cihalikova, J., Kubalakova, M., Safar, J., Vrana, J., BAC pooling, BAC library repository, and access:, Berges, H., Bellec, A., Vautrin, S., IWGSC sequence and data repository and access:, Alaux, M., Alfama, F., Adam-Blondon, A.-F., Flores, R., Guerche, C., Letellier, T., Loaec, M., Quesneville, H., Physical maps and BAC-based sequences:, 1; A BAC sequencing and assembly:, Pozniak, C. J., Sharpe, A. G., Walkowiak, S., Budak, H., Condie, J., Ens, J., Koh, C., Maclachlan, R., Tan, Y., Wicker, T., 1; B BAC sequencing and assembly:, Choulet, F., Paux, E., Alberti, A., Aury, J.-M., Balfourier, F., Barbe, V., Couloux, A., Cruaud, C., Labadie, K., Mangenot, S., Wincker, P., 1; D, 4; D, and 6; D physical mapping:, Gill, B., Kaur, G., Luo, M., Sehgal, S., 2; AL physical mapping:, Singh, K., Chhuneja, P., Gupta, O. P., Jindal, S., Kaur, P., Malik, P., Sharma, P., Yadav, B., 2; AS physical mapping:, Singh, N. K., Khurana, J., Chaudhary, C., Khurana, P., Kumar, V., Mahato, A., Mathur, S., Sevanthi, A., Sharma, N., Tomar, R. S., 2; B, 2; D, 4; B, 5; BL, and 5; DL IWGSC-Bayer Whole-Genome Profiling (WGP) physical maps:, Rogers, J., Jacobs, J., Alaux, M., Bellec, A., Berges, H., Dolezel, J., Feuillet, C., Frenkel, Z., Gill, B., Korol, A., van der Vossen, E., Vautrin, S., 3; AL physical mapping:, Gill, B., Kaur, G., Luo, M., Sehgal, S., 3; DS physical mapping and BAC sequencing and assembly:, Bartos, J., Holusova, K., Plihal, O., 3; DL BAC sequencing and assembly:, Clark, M. D., Heavens, D., Kettleborough, G., Wright, J., 4; A physical mapping, BAC sequencing, assembly, and annotation:, Valarik, M., Abrouk, M., Balcarkova, B., Holusova, K., Hu, Y., Luo, M., 5; BS BAC sequencing and assembly:, Salina, E., Ravin, N., Skryabin, K., Beletsky, A., Kadnikov, V., Mardanov, A., Nesterov, M., Rakitin, A., Sergeeva, E., 6; B BAC sequencing and assembly:, Handa, H., Kanamori, H., Katagiri, S., Kobayashi, F., Nasuda, S., Tanaka, T., Wu, J., 7; A physical mapping and BAC sequencing:, Appels, R., Hayden, M., Keeble-Gagnere, G., Rigault, P., Tibbits, J., 7; B physical mapping, BAC sequencing, and assembly:, Olsen, O.-A., Belova, T., Cattonaro, F., Jiumeng, M., Kugler, K., Mayer, K. F. X., Pfeifer, M., Sandve, S., Xun, X., Zhan, B., 7; DS BAC sequencing and assembly:, Simkova, H., Abrouk, M., Batley, J., Bayer, P. E., Edwards, D., Hayashi, S., Toegelova, H., Tulpova, Z., Visendi, P., 7; DL physical mapping and BAC sequencing:, Weining, S., Cui, L., Du, X., Feng, K., Nie, X., Tong, W., Wang, L., Figures:, Borrill, P., Gundlach, H., Galvez, S., Kaithakottil, G., Lang, D., Lux, T., Mascher, M., Ormanbekova, D., Prade, V., Ramirez-Gonzalez, R. H., Spannagl, M., Stein, N., Uauy, C., Venturini, L., Manuscript writing team:, Stein, N., Appels, R., Eversole, K., Rogers, J., Borrill, P., Cattivelli, L., Choulet, F., Hernandez, P., Kanyuka, K., Lang, D., Mascher, M., Nilsen, K., Paux, E., Pozniak, C. J., Ramirez-Gonzalez, R. H., Simkova, H., Small, I., Spannagl, M., Swarbreck, D., Uauy, C.

American Association for the Advancement of Science (AAAS)

In: Science

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Publikationsdatum: 2018-08-17

Beschreibung: An annotated reference sequence representing the hexaploid bread wheat genome in 21 pseudomolecules has been analyzed to identify the distribution and genomic context of coding and noncoding elements across the A, B, and D subgenomes. With an estimated coverage of 94% of the genome and containing 107,891 high-confidence gene models, this assembly enabled the discovery of tissue- and developmental stage–related coexpression networks by providing a transcriptome atlas representing major stages of wheat development. Dynamics of complex gene families involved in environmental adaptation and end-use quality were revealed at subgenome resolution and contextualized to known agronomic single-gene or quantitative trait loci. This community resource establishes the foundation for accelerating wheat research and application through improved understanding of wheat biology and genomics-assisted breeding.

Schlagwort(e): Botany, Ecology, Online Only

Print ISSN: 0036-8075

Digitale ISSN: 1095-9203

Thema: Biologie , Chemie und Pharmazie , Geologie und Paläontologie , Informatik , Medizin , Allgemeine Naturwissenschaft , Physik

Publiziert von American Association for the Advancement of Science (AAAS)

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Carnivoran jaw shape (1978)

S. J. Olsen ; J. W. Olsen

American Association for the Advancement of Science (AAAS)

In: Science. 202(4373): 1218. doi: 10.1126/science.202.4373.1218-a.

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Publikationsdatum: 1978-12-15

Beschreibung: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Olsen, S J -- Olsen, J W -- New York, N.Y. -- Science. 1978 Dec 15;202(4373):1218.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/17735408" target="_blank"〉PubMed〈/a〉

Print ISSN: 0036-8075

Digitale ISSN: 1095-9203

Thema: Biologie , Chemie und Pharmazie , Informatik , Medizin , Allgemeine Naturwissenschaft , Physik

Publiziert von American Association for the Advancement of Science (AAAS)

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The GSA dry scrubbing technology for retrofit applications (1999)

Felsvang, Karsten ; Olsen, Peter Bo ; Jensen, Flemming ; [weitere]

Wiley

In: Environmental Progress. 1999; 18(2): 75-79. Published 1999 Jan 01. doi: 10.1002/ep.670180210.

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Publikationsdatum: 1999-01-01

Print ISSN: 0278-4491

Digitale ISSN: 1547-5921

Thema: Chemie und Pharmazie , Werkstoffwissenschaften, Fertigungsverfahren, Fertigung

Publiziert von Wiley im Namen von American Institute of Chemical Engineers.

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The Role of Water in Protection Against Thermal Deterioration of Liquid Margarine (2015)

Kirkhus, Bente ; Lamglait, Amandine ; Storrø, Ivar ; [weitere]

Wiley

In: Journal of the American Oil Chemists' Society. 2015; 92(2): 215-223. Published 2015 Jan 11. doi: 10.1007/s11746-014-2589-9.

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Publikationsdatum: 2015-01-11

Print ISSN: 0003-021X

Digitale ISSN: 1558-9331

Thema: Chemie und Pharmazie , Werkstoffwissenschaften, Fertigungsverfahren, Fertigung

Publiziert von Wiley

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Mayonnaise oils, mayonnaise and the kreis test (1931)

Olsen, A. G. ; Southwick, C. A.

Wiley

In: Journal of the American Oil Chemists' Society. 1931; 8(12): 437-440. Published 1931 Dec 01. doi: 10.1007/bf02574468.

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Publikationsdatum: 1931-12-01

Print ISSN: 0003-021X

Digitale ISSN: 1558-9331

Thema: Chemie und Pharmazie , Werkstoffwissenschaften, Fertigungsverfahren, Fertigung

Publiziert von Wiley

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Magnetochronology of the entire Chinle Formation (Norian age) in a scientific drill core from Petrified Forest National Park (Arizona, USA) and implications for regional and global correlations in the Late Triassic (2019)

Dennis V. Kent, Paul E. Olsen, Christopher Lepre, Cornelia Rasmussen, Roland Mundil, George E. Gehrels, Dominique Giesler, Randall B. Irmis, John W. Geissman, William G. Parker

Wiley

In: Geochemistry, Geophysics, Geosystems

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Publikationsdatum: 2019

Beschreibung: Abstract Building on an earlier study that confirmed the stability of the 405‐kyr eccentricity climate cycle and the timing of the Newark‐Hartford astrochronostratigraphic polarity time scale (N‐H APTS) back to 215 Ma, we extend the magnetochronology of the Late Triassic Chinle Formation to its basal unconformity in scientific drill core PFNP‐1A from Petrified Forest National Park (Arizona, USA). The 335‐m‐thick Chinle section is imprinted with paleomagnetic polarity zones PF1r to PF10n, which we correlate to chrons E17r to E9n (~209 to 224 Ma) of the N‐H APTS. A sediment accumulation rate of ~34 m/Myr can be extended down to ~270 meters, close to the base of the Sonsela Member and the base of magnetozone PF5n, which we correlate to chron E14n that onsets at 216.16 Ma. Magnetozones PF5r to PF10n in the underlying 65‐m‐thick section of the mudstone‐dominated Blue Mesa and Mesa Redondo members plausibly correlate to chrons E13r to E9n, indicating a sediment accumulation rate of only ~10 m/Myr. Published high precision U‐Pb detrital zircon dates from the lower Chinle tend to be several million years older than the magnetochronological age model. The source of this discrepancy is unclear but may be due to sporadic introduction of juvenile zircons that get recycled. The new magnetochronological constraint on the base of the Sonsela Member brings the apparent timing of the included Adamanian‐Revueltian land vertebrate faunal zone boundary and the Zone II to Zone III palynofloral transition closer to the temporal range of the ~215 Ma Manicouagan impact structure in Canada.

Digitale ISSN: 1525-2027

Thema: Chemie und Pharmazie , Geologie und Paläontologie , Physik

Publiziert von Wiley im Namen von American Geophysical Union (AGU).

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The oceanic sink for anthropogenic CO2 from 1994 to 2007 (2019)

Gruber, N., Clement, D., Carter, B. R., Feely, R. A., van Heuven, S., Hoppema, M., Ishii, M., Key, R. M., Kozyr, A., Lauvset, S. K., Lo Monaco, C., Mathis, J. T., Murata, A., Olsen, A., Perez, F. F., Sabine, C. L., Tanhua, T., Wanninkhof, R.

American Association for the Advancement of Science (AAAS)

In: Science

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Publikationsdatum: 2019

Beschreibung: 〈p〉We quantify the oceanic sink for anthropogenic carbon dioxide (CO〈sub〉2〈/sub〉) over the period 1994 to 2007 by using observations from the global repeat hydrography program and contrasting them to observations from the 1990s. Using a linear regression–based method, we find a global increase in the anthropogenic CO〈sub〉2〈/sub〉 inventory of 34 ± 4 petagrams of carbon (Pg C) between 1994 and 2007. This is equivalent to an average uptake rate of 2.6 ± 0.3 Pg C year〈sup〉–1〈/sup〉 and represents 31 ± 4% of the global anthropogenic CO〈sub〉2〈/sub〉 emissions over this period. Although this global ocean sink estimate is consistent with the expectation of the ocean uptake having increased in proportion to the rise in atmospheric CO〈sub〉2〈/sub〉, substantial regional differences in storage rate are found, likely owing to climate variability–driven changes in ocean circulation.〈/p〉

Print ISSN: 0036-8075

Digitale ISSN: 1095-9203

Thema: Biologie , Chemie und Pharmazie , Informatik , Medizin , Allgemeine Naturwissenschaft , Physik

Publiziert von American Association for the Advancement of Science (AAAS)

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The Nordic Seas carbon budget: Sources, sinks, and uncertainties (2011)

Emil Jeansson, Are Olsen, Tor Eldevik, Ingunn Skjelvan, Abdirahman M. Omar, Siv K. Lauvset, Jan Even Ø. Nilsen, Richard G. J. Bellerby, Truls Johannessen and Eva Falck

Wiley

In: Global Biogeochemical Cycles

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Publikationsdatum: 2011-12-09

Beschreibung: A carbon budget for the Nordic Seas is derived by combining recent inorganic carbon data from the CARINA database with relevant volume transports. Values of organic carbon in the Nordic Seas' water masses, the amount of carbon input from river runoff, and the removal through sediment burial are taken from the literature. The largest source of carbon to the Nordic Seas is the Atlantic Water that enters the area across the Greenland-Scotland Ridge; this is in particular true for the anthropogenic CO2. The dense overflows into the deep North Atlantic are the main sinks of carbon from the Nordic Seas. The budget show that presently 12.3 ± 1.4 Gt C yr−1 is transported into the Nordic Seas and that 12.5 ± 0.9 Gt C yr−1 is transported out, resulting in a net advective carbon transport out of the Nordic Seas of 0.17 ± 0.06 Gt C yr−1. Taking storage into account, this implies a net air-to-sea CO2 transfer of 0.19 ± 0.06 Gt C yr−1 into the Nordic Seas. The horizontal transport of carbon through the Nordic Seas is thus approximately two orders of magnitude larger than the CO2 uptake from the atmosphere. No difference in CO2 uptake was found between 2002 and the preindustrial period, but the net advective export of carbon from the Nordic Seas is smaller at present due to the accumulation of anthropogenic CO2.

Print ISSN: 0886-6236

Digitale ISSN: 1944-9224

Thema: Biologie , Chemie und Pharmazie , Geographie , Geologie und Paläontologie , Physik

Publiziert von Wiley im Namen von American Geophysical Union (AGU).

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CO2 semiannual oscillation in the middle troposphere and at the surface (2012)

Xun Jiang, Moustafa T. Chahine, Qinbin Li, Maochang Liang, Edward T. Olsen, Luke L. Chen, Jingqian Wang and Yuk L. Yung

Wiley

In: Global Biogeochemical Cycles

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Publikationsdatum: 2012-07-28

Beschreibung: Using in situ measurements, we find a semiannual oscillation (SAO) in the midtropospheric and surface CO2. Chemistry transport models (2-D Caltech/JPL model, 3-D GEOS-Chem, and 3-D MOZART-2) are used to investigate possible sources for the SAO signal in the midtropospheric and surface CO2. From model sensitivity studies, it is revealed that the SAO signal in the midtropospheric CO2 originates mainly from surface CO2 with a small contribution from transport fields. It is also found that the source for the SAO signal in surface CO2 is mostly related to the CO2 exchange between the biosphere and the atmosphere. By comparing model CO2 with in situ CO2 measurements at the surface, we find that models are able to capture both annual and semiannual cycles well at the surface. Model simulations of the annual and semiannual cycles of CO2 in the tropical middle troposphere agree reasonably well with aircraft measurements.

Print ISSN: 0886-6236

Digitale ISSN: 1944-9224

Thema: Biologie , Chemie und Pharmazie , Geographie , Geologie und Paläontologie , Physik

Publiziert von Wiley im Namen von American Geophysical Union (AGU).

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Biomedicine. The NASA-NCI collaboration on biomolecular sensors (2001)

D. S. Goldin ; C. A. Dahl ; K. L. Olsen ; [weitere]

American Association for the Advancement of Science (AAAS)

In: Science. 292(5516): 443-4.

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Publikationsdatum: 2001-05-02

Beschreibung: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Goldin, D S -- Dahl, C A -- Olsen, K L -- Ostrach, L H -- Klausner, R D -- New York, N.Y. -- Science. 2001 Apr 20;292(5516):443-4.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉National Aeronautics and Space Administration (NASA), Washington, DC 20546, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11330296" target="_blank"〉PubMed〈/a〉

Schlagwort(e): Biomarkers ; Biomarkers, Tumor ; *Biosensing Techniques ; Miniaturization ; *National Institutes of Health (U.S.) ; *Neoplasms/diagnosis/prevention & control/therapy ; *Research ; *Space Flight ; Spacecraft ; United States ; *United States National Aeronautics and Space Administration

Print ISSN: 0036-8075

Digitale ISSN: 1095-9203

Thema: Biologie , Chemie und Pharmazie , Informatik , Medizin , Allgemeine Naturwissenschaft , Physik

Publiziert von American Association for the Advancement of Science (AAAS)

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