ALBERT

Description: Our growing awareness of the microbial world’s importance and diversity contrasts starkly with our limited understanding of its fundamental structure. Despite recent advances in DNA sequencing, a lack of standardized protocols and common analytical frameworks impedes comparisons among studies, hindering the development of global inferences about microbial life on Earth. Here we present a meta-analysis of microbial community samples collected by hundreds of researchers for the Earth Microbiome Project. Coordinated protocols and new analytical methods, particularly the use of exact sequences instead of clustered operational taxonomic units, enable bacterial and archaeal ribosomal RNA gene sequences to be followed across multiple studies and allow us to explore patterns of diversity at an unprecedented scale. The result is both a reference database giving global context to DNA sequence data and a framework for incorporating data from future studies, fostering increasingly complete characterization of Earth’s microbial diversity.

Description: Multichannel seismic reflection images across the transition between the east Alborán and the Algero-Balearic basins show how crustal thickness decreases from about 5 s two-way traveltime (TWTT, ∼15 km thick) in the west (east Alborán basin) to ∼2 s TWTT typical of oceanic crust (∼6 km thick) in the east (Algero-Balearic basin). We have differentiated three different crustal domains in this transition, mainly on the basis of crustal thickness and seismic signature. Boundaries between the three crustal domains are transitional and lack evidence for major faults. Tilted blocks related to extension are very scarce and all sampled basement outcrops are volcanic, suggesting a strong relationship between magmatism and crustal structure. Stratigraphic correlation of lithoseismic units with sedimentary units of southeastern Betic basins indicates that sediments onlap igneous basement approximately at 12 Ma in the eastern area and at 8 Ma in the western area. Linking seismic crustal structure with magmatic geochemical evidence suggests that the three differentiated crustal domains may represent, from west to east, thin continental crust modified by arc magmatism, magmatic-arc crust, and oceanic crust. Middle to late Miocene arc and oceanic crust formation in the east Alborán and Algero-Balearic basins, respectively, occurred during westward migration of the Gibraltar accretionary wedge and shortening in the Betic-Rif foreland basins. Arc magmatism and associated backarc oceanic crust formation were related to early to middle Miocene subduction and rollback of the Flysch Trough oceanic basement. Subduction of this narrow slab beneath the Alborán basin was coeval with collision of the Alborán domain with the Iberian and African passive margins and subsequent subcontinental-lithosphere edge delamination along the Betic-Rif margins.

Description: Coastal upwelling zones are hotspots of oceanic productivity, driven by phytoplankton photosynthesis. Bacteria, in turn, grow on and are the principal remineralizers of dissolved organic matter (DOM) produced in aquatic ecosystems. However, the molecular processes that key bacterial taxa employ to regulate the turnover of phytoplankton-derived DOM are not well understood. We therefore carried out comparative time-series metatranscriptome analyses of bacterioplankton in the Northwest Iberian upwelling system, using parallel sampling of seawater and mesocosms with in situ-like conditions. The mesocosm experiment uncovered a taxon-specific progression of transcriptional responses from bloom development (characterized by a diverse set of taxa in the orders Cellvibrionales, Rhodobacterales, and Pelagibacterales), over early decay (mainly taxa in the Alteromonadales and Flavobacteriales), to senescence phases (Flavobacteriales and Saprospirales taxa). Pronounced order-specific differences in the transcription of glycoside hydrolases, peptidases, and transporters were found, supporting that functional resource partitioning is dynamically structured by temporal changes in available DOM. In addition, comparative analysis of mesocosm and field samples revealed a high degree of metabolic plasticity in the degradation and uptake of carbohydrates and nitrogen-rich compounds, suggesting these gene systems critically contribute to modulating the stoichiometry of the labile DOM pool. Our findings suggest that cascades of transcriptional responses in gene systems for the utilization of organic matter and nutrients largely shape the fate of organic matter on the time scales typical of upwelling-driven phytoplankton blooms.

Description: Polymetallic nodule mining at abyssal depths in the Clarion Clipperton Fracture Zone (Eastern Central Pacific) will impact one of the most remote and least known environments on Earth. Since vast areas are being targeted by concession holders for future mining, large-scale effects of these activities are expected. Hence, insight into the fauna associated with nodules is crucial to support effective environmental management. In this study video surveys were used to compare the epifauna from sites with contrasting nodule coverage in four license areas. Results showed that epifaunal densities are more than two times higher at dense nodule coverage (〉25 versus ≤10 individuals per 100 m2), and that taxa such as alcyonacean and antipatharian corals are virtually absent from nodule-free areas. Furthermore, surveys conducted along tracks from trawling or experimental mining simulations up to 37 years old, suggest that the removal of epifauna is almost complete and that its full recovery is slow. By highlighting the importance of nodules for the epifaunal biodiversity of this abyssal area, we urge for cautious consideration of the criteria for determining future preservation zones.

Description: High-resolution acoustic and seismic data acquired 100 km offshore Cape São Vicente, image with unprecedented detail one of the largest active reverse faults of the SW Iberian Margin, the Horseshoe Fault (HF). The HF region is an area seismogenically active, source of the largest magnitude instrumental and historical earthquake (Mw〉6) occurred in the SW Iberian Margin. The HF corresponds to a N40 trending, 110 km long, and NW-verging active thrust that affects the whole sedimentary sequence and reaches up to the seafloor, generating a relief of more than 1 km. The along-strike structural variability as well as fault trend suggests that the HF is composed by three main sub-segments: North (N25), Central (N50) and South (N45). Swath-bathymetry, TOBI sidescan sonar backscatter and parametric echosounder TOPAS profiles reveal the surface morphology of the HF block, characterized by several, steep (20º) small scarps located on the hangingwall, and a succession of mass transport deposits (i.e. turbidites) on its footwall, located in the Horseshoe Abyssal Plain. A succession of pre-stack depth-migrated multichannel seismic reflection profiles across the HF and neighboring areas allowed us to constrain their seismo-stratigraphy, structural geometry, tectono-sedimentary evolution from Upper Jurassic to present-day, and to calculate their fault parameters. Finally, on the basis of segment length, surface fault area and seismogenic depth we evaluated the seismic potential of the HF, which in the worst-case scenario may generate an earthquake of magnitude Mw 7.8 ± 0.1. Thus, considering the tectonic behavior and near-shore location, the HF should be recognized in seismic and tsunami hazard assessment models of Western Europe and North Africa.

Description: IODP Expedition 340 successfully drilled a series of sites offshore Montserrat, Martinique and Dominica in the Lesser Antilles from March to April 2012. These are among the few drill sites gathered around volcanic islands, and the first scientific drilling of large and likely tsunamigenic volcanic island-arc landslide deposits. These cores provide evidence and tests of previous hypotheses for the composition and origin of those deposits. Sites U1394, U1399, and U1400 that penetrated landslide deposits recovered exclusively seafloor-sediment, comprising mainly turbidites and hemipelagic deposits, and lacked debris avalanche deposits. This supports the concepts that i/ volcanic debris avalanches tend to stop at the slope break, and ii/ widespread and voluminous failures of pre-existing low-gradient seafloor sediment can be triggered by initial emplacement of material from the volcano. Offshore Martinique (U1399 and 1400), the landslide deposits comprised blocks of parallel strata that were tilted or micro-faulted, sometimes separated by intervals of homogenized sediment (intense shearing), while Site U1394 offshore Montserrat penetrated a flat-lying block of intact strata. The most likely mechanism for generating these large-scale seafloor-sediment failures appears to be propagation of a decollement from proximal areas loaded and incised by a volcanic debris avalanche. These results have implications for the magnitude of tsunami generation. Under some conditions, volcanic island landslide deposits comprised of mainly seafloor sediment will tend to form smaller magnitude tsunamis than equivalent volumes of subaerial block-rich mass flows rapidly entering water. Expedition 340 also successfully drilled sites to access the undisturbed record of eruption fallout layers intercalated with marine sediment which provide an outstanding high-resolution dataset to analyze eruption and landslides cycles, improve understanding of magmatic evolution as well as offshore sedimentation processes. This article is protected by copyright. All rights reserved.

Description: The southwest Pacific Ocean covers a broad range of surface-water conditions ranging from warm, salty water in the subtropical East Australian Current to fresher, cold water in the Circumpolar Current. Using a new database of planktonic foraminifera assemblages (AUSMAT-F2), we demonstrate that the modern analog technique can be used to accurately reconstruct the magnitude of sea-surfacetemperature (SST) in this region. We apply this technique to data from 29 deep-sea cores along a meridional transect of the southwest Pacific Ocean to estimate the magnitude of SST cooling during the Last Glacial Maximum. We find minimal cooling in the tropics (0°–2°C), moderate cooling in the subtropical midlatitudes (2°–6°C), and maximum cooling to the southeast of New Zealand (6°–10°C). The magnitude of cooling at the sea surface from the tropics to the temperate latitudes is found to generally be less than cooling at the surface of adjacent land masses.

Description: An interlaboratory study of Mg/Ca and Sr/Ca ratios in three commercially available carbonate reference materials (BAM RS3, CMSI 1767, and ECRM 752-1) was performed with the participation of 25 laboratories that determine foraminiferal Mg/Ca ratios worldwide. These reference materials containing Mg/Ca in the range of foraminiferal calcite (0.8 mmol/mol to 6 mmol/mol) were circulated with a dissolution protocol for analysis. Participants were asked to make replicate dissolutions of the powdered samples and to analyze them using the instruments and calibration standards routinely used in their laboratories. Statistical analysis was performed in accordance with the International Standardization Organization standard 5725, which is based on the analysis of variance (ANOVA) technique. Repeatability (RSDr%), an indicator of intralaboratory precision, for Mg/Ca determinations in solutions after centrifuging increased with decreasing Mg/Ca, ranging from 0.78% at Mg/Ca = 5.56 mmol/mol to 1.15% at Mg/Ca = 0.79 mmol/mol. Reproducibility (RSDR%), an indicator of the interlaboratory method precision, for Mg/Ca determinations in centrifuged solutions was noticeably worse than repeatability, ranging from 4.5% at Mg/Ca = 5.56 mmol/mol to 8.7% at Mg/Ca = 0.79 mmol/mol. Results of this study show that interlaboratory variability is dominated by inconsistencies among instrument calibrations and highlight the need to improve interlaboratory compatibility. Additionally, the study confirmed the suitability of these solid standards as reference materials for foraminiferal Mg/Ca (and Sr/Ca) determinations, provided that appropriate procedures are adopted to minimize and to monitor possible contamination from silicate mineral phases.

Description: The history of the Arctic Ocean during the Cenozoic era (0–65 million years ago) is largely unknown from direct evidence. Here we present a Cenozoic palaeoceanographic record constructed from 〉400 m of sediment core from a recent drilling expedition to the Lomonosov ridge in the Arctic Ocean. Our record shows a palaeoenvironmental transition from a warm 'greenhouse' world, during the late Palaeocene and early Eocene epochs, to a colder 'icehouse' world influenced by sea ice and icebergs from the middle Eocene epoch to the present. For the most recent approx14 Myr, we find sedimentation rates of 1–2 cm per thousand years, in stark contrast to the substantially lower rates proposed in earlier studies; this record of the Neogene reveals cooling of the Arctic that was synchronous with the expansion of Greenland ice (approx3.2 Myr ago) and East Antarctic ice (approx14 Myr ago). We find evidence for the first occurrence of ice-rafted debris in the middle Eocene epoch (approx45 Myr ago), some 35 Myr earlier than previously thought; fresh surface waters were present at approx49 Myr ago, before the onset of ice-rafted debris. Also, the temperatures of surface waters during the Palaeocene/Eocene thermal maximum (approx55 Myr ago) appear to have been substantially warmer than previously estimated. The revised timing of the earliest Arctic cooling events coincides with those from Antarctica, supporting arguments for bipolar symmetry in climate change.

Description: Key Points: Use of sedimentary nitrogen isotopes is examined; On average, sediment 15N/14N increases approx. 2 per mil during early burial; Isotopic alteration scales with water depth Abstract: Nitrogen isotopes are an important tool for evaluating past biogeochemical cycling from the paleoceanographic record. However, bulk sedimentary nitrogen isotope ratios, which can be determined routinely and at minimal cost, may be altered during burial and early sedimentary diagenesis, particularly outside of continental margin settings. The causes and detailed mechanisms of isotopic alteration are still under investigation. Case studies of the Mediterranean and South China Seas underscore the complexities of investigating isotopic alteration. In an effort to evaluate the evidence for alteration of the sedimentary N isotopic signal and try to quantify the net effect, we have compiled and compared data demonstrating alteration from the published literature. A 〉100 point comparison of sediment trap and surface sedimentary nitrogen isotope values demonstrates that, at sites located off of the continental margins, an increase in sediment 15N/14N occurs during early burial, likely at the seafloor. The extent of isotopic alteration appears to be a function of water depth. Depth-related differences in oxygen exposure time at the seafloor are likely the dominant control on the extent of N isotopic alteration. Moreover, the compiled data suggest that the degree of alteration is likely to be uniform through time at most sites so that bulk sedimentary isotope records likely provide a good means for evaluating relative changes in the global N cycle.