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  • Atomic, Molecular and Optical Physics  (54)
  • Wiley-Blackwell  (54)
  • 1995-1999  (54)
  • 1955-1959
  • 1
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 60 (1996), S. 579-592 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Position and momentum space plots are presented for localized molecular orbitals in hydrocarbons, boranes, a carborane, and two octahedral transition metal complexes. The p-space representation proves to be valuable for visualizing such orbitals since it highlights the differences in their character from one molecule to another. Factors influencing the form of the orbitals in p space, including the oscillatory behavior caused by contributions to an orbital from more than one center, are examined in detail. © 1996 John Wiley & Sons, Inc.
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  • 2
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Theoretical calculations of the potential energy surface (PES) for the [NH3 + HCl] system are presented using several standard ab initio methods such as Hartree-Fock (HF), second-order Møller-Plesset perturbation theory (MP2), coupled cluster (CC), complete active space self-consistent-field (CASSCF), density functional theory (DFT), and less traditional ab initio approaches such as Dirac-Fock four-components and the use of effective Hamiltonian techniques, such as the recently proposed K functional. All calculations predict a single minimum for the complex, corresponding to a hydrogen-bonded structure, confirming early studies. The dynamical and nondynamical contributions to the correlation energy are discussed for different cuts of the PES, involving different N(SINGLE BOND)Cl distances. The complex has also been characterized by performing a full geometry optimization within the HF and DFT schemes; with the latter we have performed also the vibrational analysis. The predicted binding energies and infrared (IR) spectrum are compared with other theoretical and experimental results. For the gas phase, we propose a binding energy of -5.3 ± 0.5 kcal/mol, thus revising the experimental value of -8.0 ± 2.8 kcal/mol; for the minimum, the predicted N(SINGLE BOND)H and H(SINGLE BOND)Cl distances are 5.91 ± 0.05 and 2.46 ± 0.05 a.u., respectively. When the computation is done with approximate inclusion of solvent effects (Onsager reaction field), the minimum is shifted and it corresponds to the ion pair NH+4·Cl- structure, similar to Mulliken's outer complex. Since the first ab initio computation for the NH4Cl complex is the pioneer work in 1967 by E. Clementi, the present work provides us with an opportunity to comment on some aspects of the evolution in computational chemistry, particularly for energy determinations. We have concluded our comments with the invitation to use four-components Fock-Dirac for molecules both with high and low Z atoms, rather than the traditional Hartree-Fock and related methods. In other words, we are of the opinion that the time is ready in quantum chemistry to switch from the Schrödinger to the Dirac representation, due to new developments in computer hardware and software. In addition, the use of effective Hamiltonians, like the recently proposed “K functional,” seems to deserve attention, because of their computational simplicity and physical reliability in predicting correlation corrections. © 1996 John Wiley & Sons, Inc.
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  • 3
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 60 (1996), S. 1525-1536 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The local self-consistent field (LSCF) method which allows full SCF computations on a fragment of very long molecular systems represented by a classical force field has been adapted to the description of nonmetallic crystals. The periodicity of the network is achieved by modifying self-consistently the basic parameters of the classical subsystem (charges, geometric parameters) along the SCF iterative scheme. The method is tested on α-cristobalite. The parametrization of the quantum classical junction, achieved by localized bond orbitals has been performed with the help of a fragment located in the bulk. The stability of the method with respect to the size of the fragment and the size of the crystalline sample appears to be very good. The properties of fully hydroxylated (010) surface are corrected described. Modeling of water adsorption on the ideal surface as well as on two kinds of surface defects gives rise to very reasonable results with an absorption energies of ca 10 kcal/mol which are close to the upper limit of the experimental data. This preliminary study appears to be quite encouraging regarding the possibilities of using this method, which can be considered as an extension of the embedded cluster approach to covalent solids. Many applications to surface chemical reactivity studies can be imagined. © 1996 John Wiley & Sons, Inc.
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  • 4
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 56 (1995), S. 371-384 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Quantum crystallography is a developing technique for extracting quantum mechanically valid properties from X-ray diffraction experiments. Quantum mechanics and crystallography are joined through the fact that the electron distributions around atoms are the source of X-ray diffraction and electron density distributions are observables that lend themselves readily to quantum mechanical description. Direct contact with the X-ray diffraction data is made by equating the structure factor magnitudes, which are readily obtained from the measured X-ray diffraction intensities, with the magnitudes of certain Fourier transforms of the quantum mechanical description of the electron distribution. The quantum mechanical description of the electron density involves molecular orbitals and an associated matrix. By requiring that the associated matrix be a projector with a normalized trace, while optimizing the fit to the experimental structure factor magnitudes, strong constraints are imposed on the relationship between the X-ray data and the quantum mechanical description of the electron density distribution. The final result should be a wave function that is in good agreement with the X-ray diffraction information and from which a variety of properties, e.g., electron densities and electrostatic potentials, could be extracted. The method for making the fit to the X-ray data involves the use of least-squares calculations in which the defining equations are the structure factor equations and equations that arise from the conditions defining a projector matrix with a normalized trace. The variables are the elements of the projector. It is also possible to refine such parameters as atomic coordinates. The calculations are facilitated by use of good initial projector matrices. For this purpose, a method has been developed for generating projector matrices for large molecules from the sum of kernel matrices. Kernel matrices are obtained from the use of fragments of the known atomic coordinates of the substance of interest and the application of molecular orbital methods in quantum mechanics. The use of fragments is justified by the fact that overlap integrals rapidly approach zero as the distances between atoms increase. © 1995 John Wiley & Sons, Inc.
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  • 5
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 60 (1996), S. 1691-1700 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: By performing ab initio calculations on fragments of leu1(SINGLEBOND)zervamicin, it is demonstrated that accurate wave functions can be obtained for this large structure by combining the results from the fragments. Input information consists of atomic coordinates as obtained, for example, from a crystal structure determination. The fragments are composed of a kernel of atoms surrounded by a chosen neighborhood of atoms. The entire molecule is divided into individual kernels and their neighborhoods are added for the individual fragment calculations on the basis of the distances of other atoms from the atoms in a kernel. The hydrated leu1(SINGLEBOND)zervamicin is composed of 295 atoms which could be handled in full by Gaussian 94. The results of the fragment calculations were combined to provide an electron density distribution for the molecule. This distribution was compared with one that represents the distribution obtained from a calculation on the entire molecule at once. The clear implication of this study is that it is feasible to perform ab initio calculations on structures by the use of fragments. The time involved increases essentially linearly with complexity. © 1996 John Wiley & Sons, Inc.
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  • 6
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 55 (1995), S. 347-359 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The extension of the PPP Hamiltonian for alternant cyclic polyenes to noninteger values of the pseudomomentum by imposing modified boundary conditions is discussed in detail. It is shown that a computer program for periodic boundary conditions can be easily adapted to the new boundary conditions. Full CI computations are carried out for some low-lying states of the PPP model of altemant cyclic polyenes (CH)N, (N even) at half-filling. The energy values obtained by using periodic (Bloch) and antiperiodic (Möbius) orbitals are used to perform energy extrapolations for N → ∞. © 1995 John Wiley & Sons, Inc.
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  • 7
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 55 (1995), S. 3-8 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: When two electronic potentials present an avoided crossing, the adiabatic approximation breaks down in the energy region near to the crossing. In particular, the correspondence between exact energy levels of the two-state system and the adiabatic levels of the lower and upper adiabatic potentials becomes ambiguous. This implies that the term “nonadiabatic effect,” used for the difference between exact and adiabatic energy eigenvalues, loses its meaning in the crossing regime unless an unambiguous way of assigning an adiabatic to an exact level is defined. This is important in order to investigate where nonadiabatic schemes, such as the generator coordinate approximation, fit in between the adiabatic approximation and quasi-exact approaches. © 1995 John Wiley & Sons, Inc.
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  • 8
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 56 (1995), S. 39-49 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A QSAR analysis of a series of Valproic Acid (vpa) derivatives is given, which shows the importance of hydrophobic and electronic effects as determinants of the anticonvulsivant activity. The statistical analysis allows one to infer that the electron acceptor capability of the carboxylic carbon atom may guide electrostatic interactions of the molecules with the receptor site, in those cases where the lipophilic requirements are satisfied. Both the anticonvulsivant activity and the calculated lipophilic parameters (log P values) are taken from the literature, whereas the electronic descriptors result from Intermediate Neglect of Differential Overlap calculations at the Configuration Interaction level, (INDO/S-CI parametrization), for the most stable conformers of each derivative. The protein environment is modeled as a dielectric continuum in a Self-Consistent Reaction Field approach. The conformational analysis is based on AMI calculations. © 1995 John Wiley & Sons, Inc.
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  • 9
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab initio accurate all-electron relativistic molecular orbital Dirac-Fock self-consistent field calculations are reported for the linear symmetric XeF2 molecule at various internuclear distances with our recently developed relativistic universal Gaussian basis set. The nonrelativistic limit Hartree-Fock calculations were also performed for XeF2 at various internuclear distances. The relativistic correction to the electronic energy of XeF2 was calculated as ∼ -215 hartrees (-5850 eV) by using the Dirac-Fock method. The dominant magnetic part of the Breit interaction correction to the nonrelativistic interelectron Coulomb repulsion was included in our calculations by both the Dirac-Fock-Breit self-consistent field and perturbation methods. The calculated Breit correction is ∼6.5 hartrees (177 eV) for XeF2. The relativistic Dirac-Fock as well as the nonrelativistic HF wave functions predict XeF2 to be unbound, due to neglect of electron correlation effects. These effects were incorporated for XeF2 by using various ab initio post Hartree-Fock methods. The calculated dissociation energy obtained using the MP2(full) method with our extensive basis set of 313 primitive Gaussians that included d and f polarization functions on Xe and F is 2.77 eV, whereas the experimental dissociation energy is 2.78 eV. The calculated correlation energy is ∼ -2 hartrees (-54 eV) at the predicted internuclear distance of 1.986 Å, which is in excellent agreement with the experimental Xe - F distance of 1.979 Å in XeF2. In summary, electron correlation effects must be included in accurate ab initio calculations since it has been shown here that their inclusion is crucial for obtaining theoretical dissociation energy (De) close to experimental value for XeF2. Furthermore, relativistic effects have been shown to make an extremely significant contribution to the total energy and orbital binding energies of XeF2. © 1995 John Wiley & Sons, Inc.
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  • 10
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 56 (1995), S. 499-508 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The local density approximation (LDA) to exchange and correlation effects has well-known limitations. The nonlocal weighted density approximation (WDA) corrects some of those defects. This is illustrated here by applications to free atoms and small atomic clusters. The WDA also induces a nonlocal kinetic energy functional that is tested for atoms. © 1995 John Wiley & Sons, Inc.
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