ALBERT

Description: Massive microbial mats covering up to 4-meter-high carbonate buildups prosper at methane seeps in anoxic waters of the northwestern Black Sea shelf. Strong 13C depletions indicate an incorporation of methane carbon into carbonates, bulk biomass, and specific lipids. The mats mainly consist of densely aggregated archaea (phylogenetic ANME-1 cluster) and sulfate-reducing bacteria (Desulfosarcina/Desulfococcusgroup). If incubated in vitro, these mats perform anaerobic oxidation of methane coupled to sulfate reduction. Obviously, anaerobic microbial consortia can generate both carbonate precipitation and substantial biomass accumulation, which has implications for our understanding of carbon cycling during earlier periods of Earth's history.

Description: The zone of continental margins is most important for the ocean’s productivity and nutrient budget and connects the flow of material from terrestrial environments to the deep-sea. Microbial processes are an important “filter” in this exchange between sediments and ocean interior. As a consequence of the variety of habitats and special environmental conditions at continental margins an enormous diversity of microbial processes and microbial life forms is found. The only definite limit to microbial life in sedimentary systems of continental margins appears to be high temperatures in the interior earth or in fluids rising from the interior. Many of the catalytic capabilities which microorganisms possess are still only incompletely explored and appear to continuously expand as new organisms are discovered. Recent discoveries at continental margins such as the microbial life in the deep sub-seafloor, microbial utilization of hydrate deposits, highly specialized microbial symbioses and the involvement of microbial processes in the formation of carbonate mounds have extended our understanding of the Earth’s bio- and geosphere dramatically. The aim of this paper is to identify important scientific issues for future research on microbial life in sedimentary environments of continental margins.

Description: Cold seep environments such as sediments above outcropping hydrate at Hydrate Ridge (Cascadia margin off Oregon) are characterized by methane venting, high sulfide fluxes caused by the anaerobic oxidation of methane, and the presence of chemosynthetic communities. Recent investigations showed that another characteristic feature of cold seeps is the occurrence of methanotrophic archaea, which can be identified by specific biomarker lipids and 16S rDNA analysis. This investigation deals with the diversity and distribution of sulfate-reducing bacteria, some of which are directly involved in the anaerobic oxidation of methane as syntrophic partners of the methanotrophic archaea. The composition and activity of the microbial communities at methane vented and nonvented sediments are compared by quantitative methods including total cell counts, fluorescence in situ hybridization (FISH), bacterial production, enzyme activity, and sulfate reduction rates. Bacteria involved in the degradation of particulate organic carbon (POC) are as active and diverse as at other productive margin sites of similar water depths. The availability of methane supports a two orders of magnitude higher microbial biomass (up to 9.6 2 10 10 cells cm m 3 ) and sulfate reduction rates (up to 8 w mol cm m 3 d m 1 ) in hydrate-bearing sediments, as well as a high bacterial diversity, especially in the group of i -proteobacteria including members of the branches Desulfosarcina/Desulfococcus , Desulforhopalus , Desulfobulbus , and Desulfocapsa . Most of the diversity of sulfate-reducing bacteria in hydrate-bearing sediments comprises seep-endemic clades, which share only low similarities with previously cultured bacteria.

Description: A large fraction of globally produced methane is converted to CO2 by anaerobic oxidation in marine sediments. Strong geochemical evidence for net methane consumption in anoxic sediments is based on methane profiles, radiotracer experiments and stable carbon isotope data. But the elusive microorganisms mediating this reaction have not yet been isolated, and the pathway of anaerobic oxidation of methane is insufficiently understood. Recent data suggest that certain archaea reverse the process of methanogenesis by interaction with sulphate-reducing bacteria. Here we provide microscopic evidence for a structured consortium of archaea and sulphate-reducing bacteria, which we identified by fluorescence in situ hybridization using specific 16S rRNA-targeted oligonucleotide probes. In this example of a structured archaeal-bacterial symbiosis, the archaea grow in dense aggregates of about 100 cells and are surrounded by sulphate-reducing bacteria. These aggregates were abundant in gas-hydrate-rich sediments with extremely high rates of methane-based sulphate reduction, and apparently mediate anaerobic oxidation of methane.

Description: The zone of continental margins is most important for the ocean’s productivity and nutrient budget and connects the flow of material from terrestrial environments to the deep-sea. Microbial processes are an important “filter” in this exchange between sediments and ocean interior. As a consequence of the variety of habitats and special environmental conditions at continental margins an enormous diversity of microbial processes and microbial life forms is found. The only definite limit to microbial life in sedimentary systems of continental margins appears to be high temperatures in the interior earth or in fluids rising from the interior. Many of the catalytic capabilities which microorganisms possess are still only incompletely explored and appear to continuously expand as new organisms are discovered. Recent discoveries at continental margins such as the microbial life in the deep sub-seafloor, microbial utilization of hydrate deposits, highly specialized microbial symbioses and the involvement of microbial processes in the formation of carbonate mounds have extended our understanding of the Earth’s bio- and geosphere dramatically. The aim of this paper is to identify important scientific issues for future research on microbial life in sedimentary environments of continental margins.