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  • 2010-2014  (264)
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  • 1
    Publication Date: 2014-09-20
    Description: Hydroacoustic and sedimentological data from the western leeward flank of the Great Bahama Bank document the interplay of off-bank sediment export, along-slope transport, and erosion, which together shape facies and thickness distribution of slope carbonates. The integrated data set depicts the combined product of these processes and allows formulation of a comprehensive model of a periplatform drift that significantly amends established models of carbonate platform slope facies distribution and geometry. The basinward-thinning wedge of the periplatform drift at the foot of the bank escarpment displays along-slope and downslope variations in sedimentary architecture. Sediments are muddy carbonate sands that coarsen basinward. The drift wedge has a pervasive cover of cyclic steps. In zones of lower contour current speed, depth-related facies belts develop, whereas strike-discontinuous sediment lobes, scarps, and gullies characterize areas with higher current speed. This understanding of the impact of currents on carbonate-slope sedimentation has wider implications for seismic and sequence stratigraphic interpretation of carbonate platforms and for applied aspects such as hydrocarbon exploration.
    Print ISSN: 0091-7613
    Electronic ISSN: 1943-2682
    Topics: Geosciences
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  • 2
    Publication Date: 2011-12-21
    Description: Liu et al. make several comments and suggestions (1) on our publication (2) in which we studied primarily the role of hypothalamic releasing hormones corticotropin-releasing hormone (CRH) and growth hormone-releasing hormone on islet function. The occurrence of HSD enzymes in rodent and human pancreatic islets has been shown by various groups. Although most of these groups have studied and discussed the role of 11β-HSD1 and steroid action with respect to β-cell function and insulin release, one study suggests a primary role of α-cells in pancreatic islets (3). Our study (2) demonstrated mRNA and protein expression of 11β-HSD1 in rodent and...
    Keywords: Letters
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 3
    Publication Date: 2011-08-18
    Description: Corticotropin-releasing hormone (CRH) and growth hormone-releasing hormone (GHRH), primarily characterized as neuroregulators of the hypothalamic-pituitary-adrenal axis, directly influence tissue-specific receptor-systems for CRH and GHRH in the endocrine pancreas. Here, we demonstrate the expression of mRNA for CRH and CRH-receptor type 1 (CRHR1) and of protein for CRHR1 in rat and human pancreatic islets and rat insulinoma cells. Activation of CRHR1 and GHRH-receptor significantly increased cell proliferation and reduced cell apoptosis. CRH stimulated both cellular content and release of insulin in rat islet and insulinoma cells. At the ultrastructural level, CRHR1 stimulation revealed a more active metabolic state with enlarged mitochondria. Moreover, glucocorticoids that promote glucose production are balanced by both 11b-hydroxysteroid dehydrogenase (11β-HSD) isoforms; 11β-HSD–type-1 and 11β-HSD–type-2. We demonstrated expression of mRNA for 11β-HSD-1 and 11β-HSD-2 and protein for 11β-HSD-1 in rat and human pancreatic islets and insulinoma cells. Quantitative real-time PCR revealed that stimulation of CRHR1 and GHRH-receptor affects the metabolism of insulinoma cells by down-regulating 11β-HSD-1 and up-regulating 11β-HSD-2. The 11β-HSD enzyme activity was analyzed by measuring the production of cortisol from cortisone. Similarly, activation of CRHR1 resulted in reduced cortisol levels, indicating either decreased 11β-HSD-1 enzyme activity or increased 11β-HSD-2 enzyme activity; thus, activation of CRHR1 alters the glucocorticoid balance toward the inactive form. These data indicate that functional receptor systems for hypothalamic-releasing hormone agonists exist within the endocrine pancreas and influence synthesis of insulin and the pancreatic glucocorticoid shuttle. Agonists of CRHR1 and GHRH-receptor, therefore, may play an important role as novel therapeutic tools in the treatment of diabetes mellitus.
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 4
    Publication Date: 2014-06-20
    Description: Author(s): J. Ludwig, Yu. B. Vasilyev, N. N. Mikhailov, J. M. Poumirol, Z. Jiang, O. Vafek, and D. Smirnov We report on Landau level spectroscopy studies of two HgTe quantum wells (QWs) near or at the critical well thickness, where the band gap vanishes. In magnetic fields up to B=16 T, oriented perpendicular to the QW plane, we observe a B dependence for the energy of the dominant cyclotron resonance (C... [Phys. Rev. B 89, 241406] Published Thu Jun 19, 2014
    Keywords: Surface physics, nanoscale physics, low-dimensional systems
    Print ISSN: 1098-0121
    Electronic ISSN: 1095-3795
    Topics: Physics
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  • 5
    Publication Date: 2013-06-01
    Description: Detection of cytoplasmic DNA represents one of the most fundamental mechanisms of the innate immune system to sense the presence of microbial pathogens. Moreover, erroneous detection of endogenous DNA by the same sensing mechanisms has an important pathophysiological role in certain sterile inflammatory conditions. The endoplasmic-reticulum-resident protein STING is critically required for the initiation of type I interferon signalling upon detection of cytosolic DNA of both exogenous and endogenous origin. Next to its pivotal role in DNA sensing, STING also serves as a direct receptor for the detection of cyclic dinucleotides, which function as second messenger molecules in bacteria. DNA recognition, however, is triggered in an indirect fashion that depends on a recently characterized cytoplasmic nucleotidyl transferase, termed cGAMP synthase (cGAS), which upon interaction with DNA synthesizes a dinucleotide molecule that in turn binds to and activates STING. We here show in vivo and in vitro that the cGAS-catalysed reaction product is distinct from previously characterized cyclic dinucleotides. Using a combinatorial approach based on mass spectrometry, enzymatic digestion, NMR analysis and chemical synthesis we demonstrate that cGAS produces a cyclic GMP-AMP dinucleotide, which comprises a 2'-5' and a 3'-5' phosphodiester linkage 〉Gp(2'-5')Ap(3'-5')〉. We found that the presence of this 2'-5' linkage was required to exert potent activation of human STING. Moreover, we show that cGAS first catalyses the synthesis of a linear 2'-5'-linked dinucleotide, which is then subject to cGAS-dependent cyclization in a second step through a 3'-5' phosphodiester linkage. This 13-membered ring structure defines a novel class of second messenger molecules, extending the family of 2'-5'-linked antiviral biomolecules.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4143541/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4143541/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Ablasser, Andrea -- Goldeck, Marion -- Cavlar, Taner -- Deimling, Tobias -- Witte, Gregor -- Rohl, Ingo -- Hopfner, Karl-Peter -- Ludwig, Janos -- Hornung, Veit -- 243046/European Research Council/International -- U19AI083025/AI/NIAID NIH HHS/ -- England -- Nature. 2013 Jun 20;498(7454):380-4. doi: 10.1038/nature12306. Epub 2013 May 30.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institute for Clinical Chemistry and Clinical Pharmacology, University Hospital, University of Bonn, 53127 Bonn, Germany. andrea.ablasser@uni-bonn.de〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23722158" target="_blank"〉PubMed〈/a〉
    Keywords: Adenosine Monophosphate/chemistry ; Animals ; Biocatalysis ; Cell Line ; Cyclic GMP/chemistry ; Cyclization ; HEK293 Cells ; Humans ; Magnetic Resonance Spectroscopy ; Membrane Proteins/*metabolism ; Mice ; Models, Molecular ; Molecular Structure ; Nucleotidyltransferases/genetics/*metabolism ; Oligoribonucleotides/biosynthesis/chemistry/*metabolism ; Second Messenger Systems/*physiology
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 6
    Publication Date: 2014-08-15
    Description: Mammalian cells possess mechanisms to detect and defend themselves from invading viruses. In the cytosol, the RIG-I-like receptors (RLRs), RIG-I (retinoic acid-inducible gene I; encoded by DDX58) and MDA5 (melanoma differentiation-associated gene 5; encoded by IFIH1) sense atypical RNAs associated with virus infection. Detection triggers a signalling cascade via the adaptor MAVS that culminates in the production of type I interferons (IFN-alpha and beta; hereafter IFN), which are key antiviral cytokines. RIG-I and MDA5 are activated by distinct viral RNA structures and much evidence indicates that RIG-I responds to RNAs bearing a triphosphate (ppp) moiety in conjunction with a blunt-ended, base-paired region at the 5'-end (reviewed in refs 1, 2, 3). Here we show that RIG-I also mediates antiviral responses to RNAs bearing 5'-diphosphates (5'pp). Genomes from mammalian reoviruses with 5'pp termini, 5'pp-RNA isolated from yeast L-A virus, and base-paired 5'pp-RNAs made by in vitro transcription or chemical synthesis, all bind to RIG-I and serve as RIG-I agonists. Furthermore, a RIG-I-dependent response to 5'pp-RNA is essential for controlling reovirus infection in cultured cells and in mice. Thus, the minimal determinant for RIG-I recognition is a base-paired RNA with 5'pp. Such RNAs are found in some viruses but not in uninfected cells, indicating that recognition of 5'pp-RNA, like that of 5'ppp-RNA, acts as a powerful means of self/non-self discrimination by the innate immune system.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4201573/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4201573/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Goubau, Delphine -- Schlee, Martin -- Deddouche, Safia -- Pruijssers, Andrea J -- Zillinger, Thomas -- Goldeck, Marion -- Schuberth, Christine -- Van der Veen, Annemarthe G -- Fujimura, Tsutomu -- Rehwinkel, Jan -- Iskarpatyoti, Jason A -- Barchet, Winfried -- Ludwig, Janos -- Dermody, Terence S -- Hartmann, Gunther -- Reis e Sousa, Caetano -- A3598/Cancer Research UK/United Kingdom -- MC_UU_12010/8/Medical Research Council/United Kingdom -- R01 AI038296/AI/NIAID NIH HHS/ -- R37 AI038296/AI/NIAID NIH HHS/ -- Cancer Research UK/United Kingdom -- England -- Nature. 2014 Oct 16;514(7522):372-5. doi: 10.1038/nature13590. Epub 2014 Aug 10.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉1] Immunobiology Laboratory, Cancer Research UK, London Research Institute, 44 Lincoln's Inn Fields, London WC2A 3LY, UK [2]. ; 1] Institut fur Klinische Chemie und Klinische Pharmakologie, Universitatsklinikum Bonn, Sigmund-Freud-Strasse 25, D-53127 Bonn, Germany [2]. ; 1] Immunobiology Laboratory, Cancer Research UK, London Research Institute, 44 Lincoln's Inn Fields, London WC2A 3LY, UK [2] Drosophila Genetics and Epigenetics, Laboratory of Developmental Biology, CNRS UMR7622, Universite Pierre et Marie Curie, Paris, France (S.D.); Medical Research Council Human Immunology Unit, Radcliffe Department of Medicine, Medical Research Council Weatherall Institute of Molecular Medicine, University of Oxford, Oxford OX3 9DS, UK (J.R.). ; 1] Department of Pediatrics, Vanderbilt University School of Medicine, D7235 Medical Center North, 1161 21st Avenue South, Nashville, Tennessee 37232-2581, USA [2] Elizabeth B. Lamb Center for Pediatric Research, Vanderbilt University School of Medicine, D7235 Medical Center North, 1161 21st Avenue South, Nashville, Tennessee 37232-2581, USA. ; Institut fur Klinische Chemie und Klinische Pharmakologie, Universitatsklinikum Bonn, Sigmund-Freud-Strasse 25, D-53127 Bonn, Germany. ; Immunobiology Laboratory, Cancer Research UK, London Research Institute, 44 Lincoln's Inn Fields, London WC2A 3LY, UK. ; Instituto de Biologia Funcional y Genomica. Consejo Superior de Investigaciones Cientificas/Universidad de Salamanca, Zacarias Gonzalez 2, 37007, Salamanca, Spain. ; 1] Department of Pediatrics, Vanderbilt University School of Medicine, D7235 Medical Center North, 1161 21st Avenue South, Nashville, Tennessee 37232-2581, USA [2] Elizabeth B. Lamb Center for Pediatric Research, Vanderbilt University School of Medicine, D7235 Medical Center North, 1161 21st Avenue South, Nashville, Tennessee 37232-2581, USA [3] Department of Pathology, Microbiology, and Immunology, Vanderbilt University School of Medicine, D7235 Medical Center North, 1161 21st Avenue South, Nashville, Tennessee 37232-2581, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25119032" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Base Pairing ; Base Sequence ; DEAD-box RNA Helicases/*metabolism ; Diphosphates/*metabolism ; Female ; Genome, Viral/genetics ; *Immunity, Innate ; Male ; Mice ; RNA, Viral/*chemistry/genetics/*metabolism ; Reoviridae/*genetics/*immunology/physiology
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 7
    Publication Date: 2012-09-22
    Description: Nearly 9 million Americans live in extreme-poverty neighborhoods, places that also tend to be racially segregated and dangerous. Yet, the effects on the well-being of residents of moving out of such communities into less distressed areas remain uncertain. Using data from Moving to Opportunity, a unique randomized housing mobility experiment, we found that moving from a high-poverty to lower-poverty neighborhood leads to long-term (10- to 15-year) improvements in adult physical and mental health and subjective well-being, despite not affecting economic self-sufficiency. A 1-standard deviation decline in neighborhood poverty (13 percentage points) increases subjective well-being by an amount equal to the gap in subjective well-being between people whose annual incomes differ by $13,000--a large amount given that the average control group income is $20,000. Subjective well-being is more strongly affected by changes in neighborhood economic disadvantage than racial segregation, which is important because racial segregation has been declining since 1970, but income segregation has been increasing.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3491569/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3491569/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Ludwig, Jens -- Duncan, Greg J -- Gennetian, Lisa A -- Katz, Lawrence F -- Kessler, Ronald C -- Kling, Jeffrey R -- Sanbonmatsu, Lisa -- P01 AG005842/AG/NIA NIH HHS/ -- P01-AG005842-22S1/AG/NIA NIH HHS/ -- P20-AG012180/AG/NIA NIH HHS/ -- P30 AG012810/AG/NIA NIH HHS/ -- R01 AG031259/AG/NIA NIH HHS/ -- R01 HD040404/HD/NICHD NIH HHS/ -- R01 HD040444/HD/NICHD NIH HHS/ -- R01 MH077026/MH/NIMH NIH HHS/ -- R01-HD040404/HD/NICHD NIH HHS/ -- R01-HD040444/HD/NICHD NIH HHS/ -- R01-MH077026/MH/NIMH NIH HHS/ -- R24 HD051152/HD/NICHD NIH HHS/ -- R24-HD051152-04/HD/NICHD NIH HHS/ -- R49-CE000906/CE/NCIPC CDC HHS/ -- R56 AG031259/AG/NIA NIH HHS/ -- R56-AG031259/AG/NIA NIH HHS/ -- New York, N.Y. -- Science. 2012 Sep 21;337(6101):1505-10.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Harris School of Public Policy, University of Chicago, 1155 East 60th Street, Chicago, IL 60637, USA. jludwig@uchicago.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22997331" target="_blank"〉PubMed〈/a〉
    Keywords: Adult ; *Happiness ; *Housing ; Humans ; Income ; *Mental Health ; *Personal Satisfaction ; *Poverty ; *Quality of Life ; *Residence Characteristics ; Social Conditions ; United States ; United States Government Agencies
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 8
    Publication Date: 2014-05-10
    Description: Author(s): L. Fernandes dos Santos, B. G. Barbosa, G. M. Gusev, J. Ludwig, D. Smirnov, A. K. Bakarov, and Yu. A. Pusep Magnetophotoluminescence and magnetotransport were studied in a GaAs/AlGaAs triple quantum well. Oscillations of the photoluminescence intensity observed in tilted magnetic fields were found to correspond to the interlayer tunneling quantum Hall gap collapses detected in magnetoresistance measuremen... [Phys. Rev. B 89, 195113] Published Fri May 09, 2014
    Keywords: Electronic structure and strongly correlated systems
    Print ISSN: 1098-0121
    Electronic ISSN: 1095-3795
    Topics: Physics
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  • 9
    Publication Date: 2013-08-24
    Description: Article The origin of the two-dimensional electron liquid between LaAlO 3 and SrTiO 3 has been a matter of debate. The authors’ investigation of stoichiometry reveals that only Al-rich LaAlO 3 leads to electron liquid formation, which points to the much discussed polar catastrophe mechanism as its origin. Nature Communications doi: 10.1038/ncomms3351 Authors: M. P. Warusawithana, C. Richter, J. A. Mundy, P. Roy, J. Ludwig, S. Paetel, T. Heeg, A. A. Pawlicki, L. F. Kourkoutis, M. Zheng, M. Lee, B. Mulcahy, W. Zander, Y. Zhu, J. Schubert, J. N. Eckstein, D. A. Muller, C. Stephen Hellberg, J. Mannhart, D. G. Schlom
    Electronic ISSN: 2041-1723
    Topics: Biology , Chemistry and Pharmacology , Natural Sciences in General , Physics
    Published by Springer Nature
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  • 10
    Publication Date: 2013-12-29
    Description: SILVA (from Latin silva, forest, http://www.arb-silva.de ) is a comprehensive resource for up-to-date quality-controlled databases of aligned ribosomal RNA (rRNA) gene sequences from the Bacteria, Archaea and Eukaryota domains and supplementary online services. SILVA provides a manually curated taxonomy for all three domains of life, based on representative phylogenetic trees for the small- and large-subunit rRNA genes. This article describes the improvements the SILVA taxonomy has undergone in the last 3 years. Specifically we are focusing on the curation process, the various resources used for curation and the comparison of the SILVA taxonomy with Greengenes and RDP-II taxonomies. Our comparisons not only revealed a reasonable overlap between the taxa names, but also points to significant differences in both names and numbers of taxa between the three resources.
    Print ISSN: 0305-1048
    Electronic ISSN: 1362-4962
    Topics: Biology
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