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  • 1
    Publication Date: 2014-08-30
    Description: Author(s): K. Kimura, S. Nakatsuji, and T. Kimura Several pyrochlore antiferromagnets are being considered as candidate materials where geometrical frustration may lead to quantum spin-liquid states. In a “breathing” pyrochlore lattice systems (see PRL 110, 097203 (2013)) the spins occupy the vertices of alternating tetrahedra of different size that are characterized by different exchange parameters J and J ′ . [Phys. Rev. B 90, 060414] Published Fri Aug 29, 2014
    Keywords: Magnetism
    Print ISSN: 1098-0121
    Electronic ISSN: 1095-3795
    Topics: Physics
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  • 2
    Publication Date: 2014-05-03
    Description: PINK1 (PTEN induced putative kinase 1) and PARKIN (also known as PARK2) have been identified as the causal genes responsible for hereditary recessive early-onset Parkinsonism. PINK1 is a Ser/Thr kinase that specifically accumulates on depolarized mitochondria, whereas parkin is an E3 ubiquitin ligase that catalyses ubiquitin transfer to mitochondrial substrates. PINK1 acts as an upstream factor for parkin and is essential both for the activation of latent E3 parkin activity and for recruiting parkin onto depolarized mitochondria. Recently, mechanistic insights into mitochondrial quality control mediated by PINK1 and parkin have been revealed, and PINK1-dependent phosphorylation of parkin has been reported. However, the requirement of PINK1 for parkin activation was not bypassed by phosphomimetic parkin mutation, and how PINK1 accelerates the E3 activity of parkin on damaged mitochondria is still obscure. Here we report that ubiquitin is the genuine substrate of PINK1. PINK1 phosphorylated ubiquitin at Ser 65 both in vitro and in cells, and a Ser 65 phosphopeptide derived from endogenous ubiquitin was only detected in cells in the presence of PINK1 and following a decrease in mitochondrial membrane potential. Unexpectedly, phosphomimetic ubiquitin bypassed PINK1-dependent activation of a phosphomimetic parkin mutant in cells. Furthermore, phosphomimetic ubiquitin accelerates discharge of the thioester conjugate formed by UBCH7 (also known as UBE2L3) and ubiquitin (UBCH7 approximately ubiquitin) in the presence of parkin in vitro, indicating that it acts allosterically. The phosphorylation-dependent interaction between ubiquitin and parkin suggests that phosphorylated ubiquitin unlocks autoinhibition of the catalytic cysteine. Our results show that PINK1-dependent phosphorylation of both parkin and ubiquitin is sufficient for full activation of parkin E3 activity. These findings demonstrate that phosphorylated ubiquitin is a parkin activator.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Koyano, Fumika -- Okatsu, Kei -- Kosako, Hidetaka -- Tamura, Yasushi -- Go, Etsu -- Kimura, Mayumi -- Kimura, Yoko -- Tsuchiya, Hikaru -- Yoshihara, Hidehito -- Hirokawa, Takatsugu -- Endo, Toshiya -- Fon, Edward A -- Trempe, Jean-Francois -- Saeki, Yasushi -- Tanaka, Keiji -- Matsuda, Noriyuki -- Canadian Institutes of Health Research/Canada -- England -- Nature. 2014 Jun 5;510(7503):162-6. doi: 10.1038/nature13392. Epub 2014 Jun 4.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉1] Laboratory of Protein Metabolism, Tokyo Metropolitan Institute of Medical Science, Setagaya-ku, Tokyo 156-8506, Japan [2] Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba 277-8561, Japan. ; Division of Cell Signaling, Fujii Memorial Institute of Medical Sciences, The University of Tokushima, Tokushima 770-8503, Japan. ; Research Center for Materials Science, Nagoya University, Nagoya, Aichi 464-8602, Japan. ; Laboratory of Protein Metabolism, Tokyo Metropolitan Institute of Medical Science, Setagaya-ku, Tokyo 156-8506, Japan. ; 1] Laboratory of Protein Metabolism, Tokyo Metropolitan Institute of Medical Science, Setagaya-ku, Tokyo 156-8506, Japan [2] Graduate School of Agriculture, Shizuoka University, 836 Ohya, Shizuoka 422-8529, Japan. ; Molecular Profiling Research Center for Drug Discovery, National Institute of Advanced Industrial Science and Technology, 2-4-7 Aomi, Koto-ku, Tokyo 135-0064, Japan. ; 1] JST-CREST/Department of Chemistry, Graduate School of Science, Nagoya University, Chikusa-ku, Nagoya 464-8602, Japan [2] JST-CREST/Faculty of Life Sciences, Kyoto Sangyo University, Kamigamo-motoyama, Kita-ku, Kyoto 603-8555, Japan. ; McGill Parkinson Program, Department of Neurology and Neurosurgery, Montreal Neurological Institute and Hospital, McGill University, Montreal, Quebec H3A 2B4, Canada. ; Department of Pharmacology & Therapeutics, McGill University, Montreal, Quebec H3G 1Y6, Canada. ; 1] Laboratory of Protein Metabolism, Tokyo Metropolitan Institute of Medical Science, Setagaya-ku, Tokyo 156-8506, Japan [2] Protein Metabolism Project, Tokyo Metropolitan Institute of Medical Science, Setagaya-ku, Tokyo 156-8506, Japan.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24784582" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Enzyme Activation ; Fibroblasts ; HeLa Cells ; Humans ; Membrane Potential, Mitochondrial ; Mice ; Mitochondria/metabolism ; Mutation/genetics ; Parkinson Disease ; Phosphorylation ; Phosphoserine/metabolism ; Protein Kinases/*metabolism ; Ubiquitin/chemistry/*metabolism ; Ubiquitin-Protein Ligases/genetics/*metabolism ; Ubiquitination
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 3
    Publication Date: 2011-06-02
    Description: Author(s): Shojiro Kimura, Masayuki Hagiwara, Tetsuya Takeuchi, Hironori Yamaguchi, Hiroaki Ueda, Yutaka Ueda, and Koichi Kindo The combination of high-frequency electron magnetic resonance (EMR) and magnetization measurements enables us to evaluate the exchange interactions in high-field phases of polycrystalline samples of the chromium spinel oxide HgCr 2 O 4 . The evaluation indicates that the lattice distortion in this compo... [Phys. Rev. B 83, 214401] Published Wed Jun 01, 2011
    Keywords: Magnetism
    Print ISSN: 1098-0121
    Electronic ISSN: 1095-3795
    Topics: Physics
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  • 4
    Publication Date: 2012-02-22
    Description: Author(s): A. A. Bush, V. N. Glazkov, M. Hagiwara, T. Kashiwagi, S. Kimura, K. Omura, L. A. Prozorova, L. E. Svistov, A. M. Vasiliev, and A. Zheludev We present the results of the magnetization and dielectric constant measurements on untwinned single-crystal samples of the frustrated S =1/2 chain cuprate LiCu 2 O 2 . Magnetic phase transitions were observed. A spin-flop transition of the spiral spin plane was observed for the field orientations H ∥ a , b ... [Phys. Rev. B 85, 054421] Published Tue Feb 21, 2012
    Keywords: Magnetism
    Print ISSN: 1098-0121
    Electronic ISSN: 1095-3795
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  • 5
    Publication Date: 2013-03-05
    Description: Author(s): Takuya Aoyama, Atsushi Miyake, Tomoko Kagayama, Katsuya Shimizu, and Tsuyoshi Kimura Effects of high pressure exceeding 10 GPa on spin-driven ferroelectricity were investigated for a multiferroic, triangular-lattice antiferromagnet (TLA), CuCrO 2 . For this purpose, we developed a system which enables us to measure ferroelectric polarization under a pressure of 10 GPa by using a diamo... [Phys. Rev. B 87, 094401] Published Mon Mar 04, 2013
    Keywords: Magnetism
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  • 6
    Publication Date: 2012-07-31
    Description: Author(s): D. V. Sheptyakov, V. Yu. Pomjakushin, R. Stern, I. Heinmaa, H. Nakamura, and T. Kimura The low-temperature crystal structure of BaCuSi 2 O 6 has been investigated with high-resolution synchrotron x-ray and neutron powder diffraction techniques and has been found to be on average (ignoring the incommensurate modulation) orthorhombic, with the most probable space group I b a m . The Cu-Cu dime... [Phys. Rev. B 86, 014433] Published Mon Jul 30, 2012
    Keywords: Magnetism
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  • 7
    Publication Date: 2012-04-07
    Description: Author(s): Keiki Fukumoto, Kuniaki Arai, Takashi Kimura, Yoshichika Otani, and Toyohiko Kinoshita The time evolution of vortex spin structures in ferromagnetic FeNi disks (4 μ m and 6 μ m in diameter and thickness of 30 nm) during fast magnetic field pulses was observed by time-resolved x-ray magnetic circular dichroism with photoelectron emission microscopy. For the smaller disk, the displacement... [Phys. Rev. B 85, 134414] Published Fri Apr 06, 2012
    Keywords: Magnetism
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  • 8
    Publication Date: 2012-07-24
    Description: Author(s): K. Karube, T. Hattori, S. Kitagawa, K. Ishida, N. Kimura, and T. Komatsubara We performed nuclear-magnetic-resonance measurements on itinerant-electron metamagnet UCoAl to investigate the critical behavior of the magnetism near a metamagnetic (MM) critical endpoint (CEP). We derived c -axis magnetization M c and its fluctuation S c from the measurements of Knight shift and nucl... [Phys. Rev. B 86, 024428] Published Mon Jul 23, 2012
    Keywords: Magnetism
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  • 9
    Publication Date: 2012-09-14
    Description: Author(s): S. Nonoguchi, T. Nomura, and T. Kimura Spin absorption effects for the longitudinal and transverse spin currents in a Permalloy nanowire have been examined by using a lateral spin valve consisting of a V-shaped ferromagnetic injector and detector. The reduction of the nonlocal spin signal due to spin absorption for the transverse spin cu... [Phys. Rev. B 86, 104417] Published Thu Sep 13, 2012
    Keywords: Magnetism
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  • 10
    Publication Date: 2012-05-12
    Description: Author(s): Jong-Suck Jung, Ayato Iyama, Hiroyuki Nakamura, Yusuke Wakabayashi, and Tsuyoshi Kimura Magnetostriction was investigated for layered A-type antiferromagnetic SmMnO 3 showing large magnetocapacitive effects around a temperature ( T TP ) where ferrimagnetically coupled Mn 3 d and Sm 4 f moments were reversed simultaneously. Upon sweeping temperature or a magnetic field, a significant lattice ... [Phys. Rev. B 85, 174414] Published Fri May 11, 2012
    Keywords: Magnetism
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