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  • Agribusiness  (1)
  • Computational Methods, Massively Parallel (Deep) Sequencing, Genomics  (1)
  • Solar energy technologies  (1)
  • Oxford University Press  (3)
  • 2010-2014  (3)
  • 1
    Publication Date: 2012-05-23
    Description: Deciphering the structure of gene regulatory networks across the tree of life remains one of the major challenges in postgenomic biology. We present a novel ChIP-seq workflow for the archaea using the model organism Halobacterium salinarum sp. NRC-1 and demonstrate its application for mapping the genome-wide binding sites of natively expressed transcription factors. This end-to-end pipeline is the first protocol for ChIP-seq in archaea, with methods and tools for each stage from gene tagging to data analysis and biological discovery. Genome-wide binding sites for transcription factors with many binding sites (TfbD) are identified with sensitivity, while retaining specificity in the identification the smaller regulons (bacteriorhodopsin-activator protein). Chromosomal tagging of target proteins with a compact epitope facilitates a standardized and cost-effective workflow that is compatible with high-throughput immunoprecipitation of natively expressed transcription factors. The Pique package, an open-source bioinformatics method, is presented for identification of binding events. Relative to ChIP-Chip and qPCR, this workflow offers a robust catalog of protein–DNA binding events with improved spatial resolution and significantly decreased cost. While this study focuses on the application of ChIP-seq in H. salinarum sp. NRC-1, our workflow can also be adapted for use in other archaea and bacteria with basic genetic tools.
    Keywords: Computational Methods, Massively Parallel (Deep) Sequencing, Genomics
    Print ISSN: 0305-1048
    Electronic ISSN: 1362-4962
    Topics: Biology
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  • 2
    Publication Date: 2014-09-02
    Description: This article discusses the current state of contract theory and its usefulness for conceptualizing issues related to agricultural contracting. The paper will explore the limitations of existing theory for applied work, and what methodological improvements are needed to enhance the usefulness of the theory to agricultural economists. One pervasive problem is that the economic literature on contracts is rather fragmented and the various methodological strands are narrow in their focus. As such, agricultural economists should engage in methodological research to develop applied contracting models that can capture higher-order features of real-world agricultural contracts while delivering generalizable comparative statics predictions because contracting continues to expand along the entire modern food marketing channel. In the latter part of this article, a simple model is developed to illustrate how classic methodological approaches can be combined with recent developments in contract and game theory to construct applied theory models that are useful for capturing some important features of agricultural contracts.
    Keywords: D43 - Oligopoly and Other Forms of Market Imperfection, D82 - Asymmetric and Private Information, D86 - Economics of Contract: Theory, Q12 - Micro Analysis of Farm Firms, Farm Households, and Farm Input Markets, Q13 - Agricultural Markets and Marketing ; Cooperatives ; Agribusiness
    Print ISSN: 0002-9092
    Electronic ISSN: 1467-8276
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition , Economics
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  • 3
    Publication Date: 2014-05-15
    Description: The efficiency of photovoltaic panels decreases as the panels' temperature increases, which results in deduction of electricity generation. In order to reduce this effect, different cooling methods were proposed and investigated. This paper reviews the previous work on cooling PV cells and concludes that the cost-effectiveness, design feasibility and minimal energy consumption are the important design consideration for cooling systems. Based on these considerations, this paper reports a passive cooling method that utilizes rainwater as cooling media and a gas expansion device to distribute the rainwater. The gas is thermally expanded from receiving solar radiation as such the amount of water it pushes to flow over the PV cells is proportional with the solar radiation it received. The paper reports a design and simulation of such a system for a domestic house application. In the paper, a relationship of the gas chamber size, solar radiation and gas expansion volume was established for evaluation with respect to the variation of gas temperature and the amount of rainwater used for cooling. A heat transfer model was used to evaluate the performance of the cells by cooling with this passive device. The results show that on a design day, the passive cooling system reduces the temperature of the cells and increases electrical efficiency of the PV panel by 8.3%. The payback period of this system is 〈14 years.
    Keywords: Solar energy technologies
    Print ISSN: 1748-1317
    Electronic ISSN: 1748-1325
    Topics: Energy, Environment Protection, Nuclear Power Engineering , Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
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