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  • PANGAEA  (412)
  • Oxford University Press
  • Tübingen: Mohr
  • 2010-2014  (415)
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Keywords
Publisher
Years
Year
  • 1
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    Unknown
    A framework for installable external tools in Skyline (2014)
    Oxford University Press
    Details
    Publication Date: 2014-08-27
    Description: : Skyline is a Windows client application for targeted proteomics method creation and quantitative data analysis. The Skyline document model contains extensive mass spectrometry data from targeted proteomics experiments performed using selected reaction monitoring, parallel reaction monitoring and data-independent and data-dependent acquisition methods. Researchers have developed software tools that perform statistical analysis of the experimental data contained within Skyline documents. The new external tools framework allows researchers to integrate their tools into Skyline without modifying the Skyline codebase. Installed tools provide point-and-click access to downstream statistical analysis of data processed in Skyline. The framework also specifies a uniform interface to format tools for installation into Skyline. Tool developers can now easily share their tools with proteomics researchers using Skyline. Availability and implementation: Skyline is available as a single-click self-updating web installation at http://skyline.maccosslab.org . This Web site also provides access to installable external tools and documentation. Contact: brendanx@u.washington.edu Supplementary information: Supplementary data are available at Bioinformatics online.
    Print ISSN: 1367-4803
    Electronic ISSN: 1460-2059
    Topics: Biology , Computer Science , Medicine
    Published by Oxford University Press
    Location Call Number Expected Availability
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    PAPER CURRENT
  • 2
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    A framework for installable external tools in Skyline (2014)
    Oxford University Press
    Details
    Publication Date: 2014-05-09
    Print ISSN: 1367-4803
    Electronic ISSN: 1460-2059
    Topics: Biology , Computer Science , Medicine
    Published by Oxford University Press
    Location Call Number Expected Availability
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    PAPER CURRENT
  • 3
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    Giant planet formation by disc instability: flux-limited radiative diffusion and protostellar wobbles (2011)
    Oxford University Press
    Details
    Publication Date: 2011-10-24
    Print ISSN: 0035-8711
    Electronic ISSN: 1365-2966
    Topics: Physics
    Published by Oxford University Press on behalf of The Royal Astronomical Society.
    Location Call Number Expected Availability
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    PAPER CURRENT
  • 4
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    Vertical profiles of environmental parameters measured from physical, optical and imaging sensors during station TARA_014 of the Tara Oceans expedition 2009-2013 (2014)
    PANGAEA
    Details
    Publication Date: 2024-01-06
    Description: The Tara Oceans Expedition (2009-2013) sampled the world oceans on board a 36 m long schooner, collecting environmental data and organisms from viruses to planktonic metazoans for later analyses using modern sequencing and state-of-the-art imaging technologies. Tara Oceans Data are particularly suited to study the genetic, morphological and functional diversity of plankton. The present data set includes properties of seawater, particulate matter and dissolved matter from physical, optical and imaging sensors mounted on a vertical sampling system (Rosette) used during the 2009-2013 tara Oceans Expedition. It comprised 2 pairs of conductivity and temperature sensors (SEABIRD components), and a complete set of WEtLabs optical sensors, including chrorophyll and CDOM fluorometers, a 25 cm transmissiometer, and a one-wavelength backscatter meter. In addition, a SATLANTIC ISUS nitrate sensor and a Hydroptic Underwater Vision Profiler (UVP) were mounted on the rosette. In the Arctic Ocean and Arctic Seas (2013), a second oxygen sensor (SBE43) and a four frequency Aquascat acoustic profiler were added. The system was powered on specific Li-Ion batteries and data were self-recorded at 24HZ. Sensors have all been factory calibrated before, during and after the four year program. Oxygen was validated using climatologies (WOA09). Nitrate and Fluorescence data were adjusted with discrete measurements from Niskin bottles mounted on the Rosette, and optical darks were performed monthly on board. A total of 839 quality checked vertical profiles were made during the tara Oceans expedition 2009-2013.
    Keywords: [day] [water layer with no specific feature]; [RVSS]; Angular scattering coefficient, 470 nm; at 117 degrees with respect to the incident beam; Backscattering coefficient of particles, 470 nm; Basis of event; Beam attenuation coefficient of particles; Bizerte to Naples, Stations: TARA_014; Campaign of event; Chlorophyll a; Comment of event; Conductivity; Date/Time of event; Density, sigma-theta (0); DEPTH, water; derived from chlorophyll fluorescence sensor, WET Labs; derived from CTD, SEA-BIRD; derived from SBE43 oxygen sensor; Event label; File name; Fluorescence, colored dissolved organic matter; Fondation Tara Expeditions; FondTara; integrated over the angular domain 90-180 degree; Latitude of event; Longitude of event; Method/Device of event; Optical backscattering coefficient, 470 nm; Optical beam attenuation coefficient, 660 nm; Optional event label; Oxygen; Particle concentration, fractionated; Particle volume, fractionated; Pressure, water; Rosette Vertical Sampling System; Salinity; Station label; SV Tara; TARA_20091019Z; TARA_20091020T1539Z_014_EVENT_CAST; Tara_Oceans_2009-2013; Tara Oceans Expedition; Temperature, water; Temperature, water, potential; Underwater vision profiler, UVP; URI of event
    Type: Dataset
    Format: text/tab-separated-values, 25300 data points
    Location Call Number Expected Availability
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    DATA PANGAEA
  • 5
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    Vertical profiles of environmental parameters measured from physical, optical and imaging sensors during station TARA_016 of the Tara Oceans expedition 2009-2013 (2014)
    PANGAEA
    Details
    Publication Date: 2024-01-06
    Description: The Tara Oceans Expedition (2009-2013) sampled the world oceans on board a 36 m long schooner, collecting environmental data and organisms from viruses to planktonic metazoans for later analyses using modern sequencing and state-of-the-art imaging technologies. Tara Oceans Data are particularly suited to study the genetic, morphological and functional diversity of plankton. The present data set includes properties of seawater, particulate matter and dissolved matter from physical, optical and imaging sensors mounted on a vertical sampling system (Rosette) used during the 2009-2013 tara Oceans Expedition. It comprised 2 pairs of conductivity and temperature sensors (SEABIRD components), and a complete set of WEtLabs optical sensors, including chrorophyll and CDOM fluorometers, a 25 cm transmissiometer, and a one-wavelength backscatter meter. In addition, a SATLANTIC ISUS nitrate sensor and a Hydroptic Underwater Vision Profiler (UVP) were mounted on the rosette. In the Arctic Ocean and Arctic Seas (2013), a second oxygen sensor (SBE43) and a four frequency Aquascat acoustic profiler were added. The system was powered on specific Li-Ion batteries and data were self-recorded at 24HZ. Sensors have all been factory calibrated before, during and after the four year program. Oxygen was validated using climatologies (WOA09). Nitrate and Fluorescence data were adjusted with discrete measurements from Niskin bottles mounted on the Rosette, and optical darks were performed monthly on board. A total of 839 quality checked vertical profiles were made during the tara Oceans expedition 2009-2013.
    Keywords: [day] [water layer with no specific feature]; [RVSS]; Angular scattering coefficient, 470 nm; at 117 degrees with respect to the incident beam; Backscattering coefficient of particles, 470 nm; Basis of event; Beam attenuation coefficient of particles; Campaign of event; Chlorophyll a; Comment of event; Conductivity; Date/Time of event; Density, sigma-theta (0); DEPTH, water; derived from chlorophyll fluorescence sensor, WET Labs; derived from CTD, SEA-BIRD; derived from SBE43 oxygen sensor; Event label; File name; Fluorescence, colored dissolved organic matter; Fondation Tara Expeditions; FondTara; integrated over the angular domain 90-180 degree; Latitude of event; Longitude of event; Method/Device of event; Naples to Valetta, Stations: TARA_015-017; Optical backscattering coefficient, 470 nm; Optical beam attenuation coefficient, 660 nm; Optional event label; Oxygen; Particle concentration, fractionated; Particle volume, fractionated; Pressure, water; Rosette Vertical Sampling System; Salinity; Station label; SV Tara; TARA_20091025Z; TARA_20091027T0820Z_016_EVENT_CAST; TARA_20091027T1247Z_016_EVENT_CAST; TARA_20091027T1921Z_016_EVENT_CAST; Tara_Oceans_2009-2013; Tara Oceans Expedition; Temperature, water; Temperature, water, potential; Underwater vision profiler, UVP; URI of event
    Type: Dataset
    Format: text/tab-separated-values, 42916 data points
    Location Call Number Expected Availability
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    DATA PANGAEA
  • 6
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    Vertical profiles of environmental parameters measured from physical, optical and imaging sensors during station TARA_017 of the Tara Oceans expedition 2009-2013 (2014)
    PANGAEA
    Details
    Publication Date: 2024-01-06
    Description: The Tara Oceans Expedition (2009-2013) sampled the world oceans on board a 36 m long schooner, collecting environmental data and organisms from viruses to planktonic metazoans for later analyses using modern sequencing and state-of-the-art imaging technologies. Tara Oceans Data are particularly suited to study the genetic, morphological and functional diversity of plankton. The present data set includes properties of seawater, particulate matter and dissolved matter from physical, optical and imaging sensors mounted on a vertical sampling system (Rosette) used during the 2009-2013 tara Oceans Expedition. It comprised 2 pairs of conductivity and temperature sensors (SEABIRD components), and a complete set of WEtLabs optical sensors, including chrorophyll and CDOM fluorometers, a 25 cm transmissiometer, and a one-wavelength backscatter meter. In addition, a SATLANTIC ISUS nitrate sensor and a Hydroptic Underwater Vision Profiler (UVP) were mounted on the rosette. In the Arctic Ocean and Arctic Seas (2013), a second oxygen sensor (SBE43) and a four frequency Aquascat acoustic profiler were added. The system was powered on specific Li-Ion batteries and data were self-recorded at 24HZ. Sensors have all been factory calibrated before, during and after the four year program. Oxygen was validated using climatologies (WOA09). Nitrate and Fluorescence data were adjusted with discrete measurements from Niskin bottles mounted on the Rosette, and optical darks were performed monthly on board. A total of 839 quality checked vertical profiles were made during the tara Oceans expedition 2009-2013.
    Keywords: [day] [water layer with no specific feature]; [RVSS]; Angular scattering coefficient, 470 nm; at 117 degrees with respect to the incident beam; Backscattering coefficient of particles, 470 nm; Basis of event; Beam attenuation coefficient of particles; Campaign of event; Chlorophyll a; Comment of event; Conductivity; Date/Time of event; Density, sigma-theta (0); DEPTH, water; derived from chlorophyll fluorescence sensor, WET Labs; derived from CTD, SEA-BIRD; derived from SBE43 oxygen sensor; Event label; File name; Fluorescence, colored dissolved organic matter; Fondation Tara Expeditions; FondTara; integrated over the angular domain 90-180 degree; Latitude of event; Longitude of event; Method/Device of event; Naples to Valetta, Stations: TARA_015-017; Optical backscattering coefficient, 470 nm; Optical beam attenuation coefficient, 660 nm; Optional event label; Oxygen; Particle concentration, fractionated; Particle volume, fractionated; Pressure, water; Rosette Vertical Sampling System; Salinity; Station label; SV Tara; TARA_20091025Z; TARA_20091028T1231Z_017_EVENT_CAST; TARA_20091028T1508Z_017_EVENT_CAST; Tara_Oceans_2009-2013; Tara Oceans Expedition; Temperature, water; Temperature, water, potential; Underwater vision profiler, UVP; URI of event
    Type: Dataset
    Format: text/tab-separated-values, 14706 data points
    Location Call Number Expected Availability
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    DATA PANGAEA
  • 7
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    Vertical profiles of environmental parameters measured from physical, optical and imaging sensors during station TARA_025 of the Tara Oceans expedition 2009-2013 (2014)
    PANGAEA
    Details
    Publication Date: 2024-01-06
    Description: The Tara Oceans Expedition (2009-2013) sampled the world oceans on board a 36 m long schooner, collecting environmental data and organisms from viruses to planktonic metazoans for later analyses using modern sequencing and state-of-the-art imaging technologies. Tara Oceans Data are particularly suited to study the genetic, morphological and functional diversity of plankton. The present data set includes properties of seawater, particulate matter and dissolved matter from physical, optical and imaging sensors mounted on a vertical sampling system (Rosette) used during the 2009-2013 tara Oceans Expedition. It comprised 2 pairs of conductivity and temperature sensors (SEABIRD components), and a complete set of WEtLabs optical sensors, including chrorophyll and CDOM fluorometers, a 25 cm transmissiometer, and a one-wavelength backscatter meter. In addition, a SATLANTIC ISUS nitrate sensor and a Hydroptic Underwater Vision Profiler (UVP) were mounted on the rosette. In the Arctic Ocean and Arctic Seas (2013), a second oxygen sensor (SBE43) and a four frequency Aquascat acoustic profiler were added. The system was powered on specific Li-Ion batteries and data were self-recorded at 24HZ. Sensors have all been factory calibrated before, during and after the four year program. Oxygen was validated using climatologies (WOA09). Nitrate and Fluorescence data were adjusted with discrete measurements from Niskin bottles mounted on the Rosette, and optical darks were performed monthly on board. A total of 839 quality checked vertical profiles were made during the tara Oceans expedition 2009-2013.
    Keywords: [day] [water layer with no specific feature]; [RVSS]; Angular scattering coefficient, 470 nm; at 117 degrees with respect to the incident beam; Backscattering coefficient of particles, 470 nm; Basis of event; Beam attenuation coefficient of particles; Campaign of event; Chlorophyll a; Comment of event; Conductivity; Date/Time of event; Density, sigma-theta (0); DEPTH, water; derived from chlorophyll fluorescence sensor, WET Labs; derived from CTD, SEA-BIRD; derived from SBE43 oxygen sensor; Dubrovnik to Athens, Stations: TARA_025-026; Event label; File name; Fluorescence, colored dissolved organic matter; Fondation Tara Expeditions; FondTara; integrated over the angular domain 90-180 degree; Latitude of event; Longitude of event; Method/Device of event; Optical backscattering coefficient, 470 nm; Optical beam attenuation coefficient, 660 nm; Optional event label; Oxygen; Particle concentration, fractionated; Particle volume, fractionated; Pressure, water; Rosette Vertical Sampling System; Salinity; Station label; SV Tara; TARA_20091122Z; TARA_20091123T0916Z_025_EVENT_CAST; Tara_Oceans_2009-2013; Tara Oceans Expedition; Temperature, water; Temperature, water, potential; Underwater vision profiler, UVP; URI of event
    Type: Dataset
    Format: text/tab-separated-values, 6578 data points
    Location Call Number Expected Availability
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    DATA PANGAEA
  • 8
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    Vertical profiles of environmental parameters measured from physical, optical and imaging sensors during station TARA_028 of the Tara Oceans expedition 2009-2013 (2014)
    PANGAEA
    Details
    Publication Date: 2024-01-06
    Description: The Tara Oceans Expedition (2009-2013) sampled the world oceans on board a 36 m long schooner, collecting environmental data and organisms from viruses to planktonic metazoans for later analyses using modern sequencing and state-of-the-art imaging technologies. Tara Oceans Data are particularly suited to study the genetic, morphological and functional diversity of plankton. The present data set includes properties of seawater, particulate matter and dissolved matter from physical, optical and imaging sensors mounted on a vertical sampling system (Rosette) used during the 2009-2013 tara Oceans Expedition. It comprised 2 pairs of conductivity and temperature sensors (SEABIRD components), and a complete set of WEtLabs optical sensors, including chrorophyll and CDOM fluorometers, a 25 cm transmissiometer, and a one-wavelength backscatter meter. In addition, a SATLANTIC ISUS nitrate sensor and a Hydroptic Underwater Vision Profiler (UVP) were mounted on the rosette. In the Arctic Ocean and Arctic Seas (2013), a second oxygen sensor (SBE43) and a four frequency Aquascat acoustic profiler were added. The system was powered on specific Li-Ion batteries and data were self-recorded at 24HZ. Sensors have all been factory calibrated before, during and after the four year program. Oxygen was validated using climatologies (WOA09). Nitrate and Fluorescence data were adjusted with discrete measurements from Niskin bottles mounted on the Rosette, and optical darks were performed monthly on board. A total of 839 quality checked vertical profiles were made during the tara Oceans expedition 2009-2013.
    Keywords: [day] [water layer with no specific feature] [near; [night] [water layer with no specific feature] [al; [night] [water layer with no specific feature] [ne; [RVSS]; Angular scattering coefficient, 470 nm; at 117 degrees with respect to the incident beam; Athens to Beyrouth, Stations: TARA_027-028; Backscattering coefficient of particles, 470 nm; Basis of event; Beam attenuation coefficient of particles; Campaign of event; Chlorophyll a; Comment of event; Conductivity; Date/Time of event; Density, sigma-theta (0); DEPTH, water; derived from chlorophyll fluorescence sensor, WET Labs; derived from CTD, SEA-BIRD; derived from SATLANTIC ISUS sensor; derived from SBE43 oxygen sensor; Event label; File name; Fluorescence, colored dissolved organic matter; Fondation Tara Expeditions; FondTara; integrated over the angular domain 90-180 degree; Latitude of event; Longitude of event; Method/Device of event; Nitrate; Optical backscattering coefficient, 470 nm; Optical beam attenuation coefficient, 660 nm; Optional event label; Oxygen; Particle concentration, fractionated; Particle volume, fractionated; Pressure, water; Rosette Vertical Sampling System; Salinity; Station label; SV Tara; TARA_20091128Z; TARA_20091204T2030Z_028_EVENT_CAST; TARA_20091205T0246Z_999_EVENT_CAST; TARA_20091205T0553Z_999_EVENT_CAST; TARA_20091205T1017Z_999_EVENT_CAST; TARA_20091205T1333Z_999_EVENT_CAST; TARA_20091206T0448Z_999_EVENT_CAST; TARA_20091209T1427Z_999_EVENT_CAST; Tara_Oceans_2009-2013; Tara Oceans Expedition; Temperature, water; Temperature, water, potential; Underwater vision profiler, UVP; URI of event
    Type: Dataset
    Format: text/tab-separated-values, 202770 data points
    Location Call Number Expected Availability
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    DATA PANGAEA
  • 9
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    Unknown
    Vertical profiles of environmental parameters measured from physical, optical and imaging sensors during station TARA_031 of the Tara Oceans expedition 2009-2013 (2014)
    PANGAEA
    Details
    Publication Date: 2024-01-06
    Description: The Tara Oceans Expedition (2009-2013) sampled the world oceans on board a 36 m long schooner, collecting environmental data and organisms from viruses to planktonic metazoans for later analyses using modern sequencing and state-of-the-art imaging technologies. Tara Oceans Data are particularly suited to study the genetic, morphological and functional diversity of plankton. The present data set includes properties of seawater, particulate matter and dissolved matter from physical, optical and imaging sensors mounted on a vertical sampling system (Rosette) used during the 2009-2013 tara Oceans Expedition. It comprised 2 pairs of conductivity and temperature sensors (SEABIRD components), and a complete set of WEtLabs optical sensors, including chrorophyll and CDOM fluorometers, a 25 cm transmissiometer, and a one-wavelength backscatter meter. In addition, a SATLANTIC ISUS nitrate sensor and a Hydroptic Underwater Vision Profiler (UVP) were mounted on the rosette. In the Arctic Ocean and Arctic Seas (2013), a second oxygen sensor (SBE43) and a four frequency Aquascat acoustic profiler were added. The system was powered on specific Li-Ion batteries and data were self-recorded at 24HZ. Sensors have all been factory calibrated before, during and after the four year program. Oxygen was validated using climatologies (WOA09). Nitrate and Fluorescence data were adjusted with discrete measurements from Niskin bottles mounted on the Rosette, and optical darks were performed monthly on board. A total of 839 quality checked vertical profiles were made during the tara Oceans expedition 2009-2013.
    Keywords: [day] [water layer with no specific feature]; [RVSS]; Angular scattering coefficient, 470 nm; at 117 degrees with respect to the incident beam; Backscattering coefficient of particles, 470 nm; Basis of event; Beam attenuation coefficient of particles; Campaign of event; Chlorophyll a; Comment of event; Conductivity; Date/Time of event; Density, sigma-theta (0); DEPTH, water; derived from chlorophyll fluorescence sensor, WET Labs; derived from CTD, SEA-BIRD; derived from SATLANTIC ISUS sensor; derived from SBE43 oxygen sensor; Event label; File name; Fluorescence, colored dissolved organic matter; Fondation Tara Expeditions; FondTara; integrated over the angular domain 90-180 degree; Latitude of event; Longitude of event; Method/Device of event; Nitrate; Optical backscattering coefficient, 470 nm; Optical beam attenuation coefficient, 660 nm; Optional event label; Oxygen; Particle concentration, fractionated; Particle volume, fractionated; Pressure, water; Rosette Vertical Sampling System; Salinity; Sharm El Sheikh to Jeddah, Stations: TARA_031-033; Station label; SV Tara; TARA_20100108Z; TARA_20100109T0736Z_031_EVENT_CAST; TARA_20100109T1003Z_031_EVENT_CAST; Tara_Oceans_2009-2013; Tara Oceans Expedition; Temperature, water; Temperature, water, potential; Underwater vision profiler, UVP; URI of event
    Type: Dataset
    Format: text/tab-separated-values, 31508 data points
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
    DATA PANGAEA
  • 10
    facet.materialart.
    Unknown
    Vertical profiles of environmental parameters measured from physical, optical and imaging sensors during station TARA_037 of the Tara Oceans expedition 2009-2013 (2014)
    PANGAEA
    Details
    Publication Date: 2024-01-06
    Description: The Tara Oceans Expedition (2009-2013) sampled the world oceans on board a 36 m long schooner, collecting environmental data and organisms from viruses to planktonic metazoans for later analyses using modern sequencing and state-of-the-art imaging technologies. Tara Oceans Data are particularly suited to study the genetic, morphological and functional diversity of plankton. The present data set includes properties of seawater, particulate matter and dissolved matter from physical, optical and imaging sensors mounted on a vertical sampling system (Rosette) used during the 2009-2013 tara Oceans Expedition. It comprised 2 pairs of conductivity and temperature sensors (SEABIRD components), and a complete set of WEtLabs optical sensors, including chrorophyll and CDOM fluorometers, a 25 cm transmissiometer, and a one-wavelength backscatter meter. In addition, a SATLANTIC ISUS nitrate sensor and a Hydroptic Underwater Vision Profiler (UVP) were mounted on the rosette. In the Arctic Ocean and Arctic Seas (2013), a second oxygen sensor (SBE43) and a four frequency Aquascat acoustic profiler were added. The system was powered on specific Li-Ion batteries and data were self-recorded at 24HZ. Sensors have all been factory calibrated before, during and after the four year program. Oxygen was validated using climatologies (WOA09). Nitrate and Fluorescence data were adjusted with discrete measurements from Niskin bottles mounted on the Rosette, and optical darks were performed monthly on board. A total of 839 quality checked vertical profiles were made during the tara Oceans expedition 2009-2013.
    Keywords: [day] [mesopelagic zone (ENVO:00000213)]; [RVSS]; Angular scattering coefficient, 470 nm; at 117 degrees with respect to the incident beam; Backscattering coefficient of particles, 470 nm; Basis of event; Beam attenuation coefficient of particles; Campaign of event; Chlorophyll a; Comment of event; Conductivity; Date/Time of event; Density, sigma-theta (0); DEPTH, water; derived from chlorophyll fluorescence sensor, WET Labs; derived from CTD, SEA-BIRD; derived from SATLANTIC ISUS sensor; derived from SBE43 oxygen sensor; Event label; File name; Fluorescence, colored dissolved organic matter; Fondation Tara Expeditions; FondTara; integrated over the angular domain 90-180 degree; Latitude of event; Longitude of event; Method/Device of event; Muscat to Mumbai, Stations: TARA_036-040; Nitrate; Optical backscattering coefficient, 470 nm; Optical beam attenuation coefficient, 660 nm; Optional event label; Oxygen; Particle concentration, fractionated; Particle volume, fractionated; Pressure, water; Rosette Vertical Sampling System; Salinity; Station label; SV Tara; TARA_20100309Z; TARA_20100313T0850Z_037_EVENT_CAST; TARA_20100313T0949Z_037_EVENT_CAST; TARA_20100313T1053Z_037_EVENT_CAST; TARA_20100313T1153Z_037_EVENT_CAST; TARA_20100313T1330Z_037_EVENT_CAST; Tara_Oceans_2009-2013; Tara Oceans Expedition; Temperature, water; Temperature, water, potential; Underwater vision profiler, UVP; URI of event
    Type: Dataset
    Format: text/tab-separated-values, 137719 data points
    Location Call Number Expected Availability
    BibTip Others were also interested in ...
    DATA PANGAEA
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