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  • General Relativity and Gravitation  (5)
  • Atomic and molecular processes in external fields, including interactions with strong fields and short pulses  (4)
  • Humans  (4)
  • Liquid Crystals  (4)
  • 2010-2014  (17)
  • 1920-1924
  • 1
    Publication Date: 2014-05-03
    Description: PINK1 (PTEN induced putative kinase 1) and PARKIN (also known as PARK2) have been identified as the causal genes responsible for hereditary recessive early-onset Parkinsonism. PINK1 is a Ser/Thr kinase that specifically accumulates on depolarized mitochondria, whereas parkin is an E3 ubiquitin ligase that catalyses ubiquitin transfer to mitochondrial substrates. PINK1 acts as an upstream factor for parkin and is essential both for the activation of latent E3 parkin activity and for recruiting parkin onto depolarized mitochondria. Recently, mechanistic insights into mitochondrial quality control mediated by PINK1 and parkin have been revealed, and PINK1-dependent phosphorylation of parkin has been reported. However, the requirement of PINK1 for parkin activation was not bypassed by phosphomimetic parkin mutation, and how PINK1 accelerates the E3 activity of parkin on damaged mitochondria is still obscure. Here we report that ubiquitin is the genuine substrate of PINK1. PINK1 phosphorylated ubiquitin at Ser 65 both in vitro and in cells, and a Ser 65 phosphopeptide derived from endogenous ubiquitin was only detected in cells in the presence of PINK1 and following a decrease in mitochondrial membrane potential. Unexpectedly, phosphomimetic ubiquitin bypassed PINK1-dependent activation of a phosphomimetic parkin mutant in cells. Furthermore, phosphomimetic ubiquitin accelerates discharge of the thioester conjugate formed by UBCH7 (also known as UBE2L3) and ubiquitin (UBCH7 approximately ubiquitin) in the presence of parkin in vitro, indicating that it acts allosterically. The phosphorylation-dependent interaction between ubiquitin and parkin suggests that phosphorylated ubiquitin unlocks autoinhibition of the catalytic cysteine. Our results show that PINK1-dependent phosphorylation of both parkin and ubiquitin is sufficient for full activation of parkin E3 activity. These findings demonstrate that phosphorylated ubiquitin is a parkin activator.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Koyano, Fumika -- Okatsu, Kei -- Kosako, Hidetaka -- Tamura, Yasushi -- Go, Etsu -- Kimura, Mayumi -- Kimura, Yoko -- Tsuchiya, Hikaru -- Yoshihara, Hidehito -- Hirokawa, Takatsugu -- Endo, Toshiya -- Fon, Edward A -- Trempe, Jean-Francois -- Saeki, Yasushi -- Tanaka, Keiji -- Matsuda, Noriyuki -- Canadian Institutes of Health Research/Canada -- England -- Nature. 2014 Jun 5;510(7503):162-6. doi: 10.1038/nature13392. Epub 2014 Jun 4.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉1] Laboratory of Protein Metabolism, Tokyo Metropolitan Institute of Medical Science, Setagaya-ku, Tokyo 156-8506, Japan [2] Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba 277-8561, Japan. ; Division of Cell Signaling, Fujii Memorial Institute of Medical Sciences, The University of Tokushima, Tokushima 770-8503, Japan. ; Research Center for Materials Science, Nagoya University, Nagoya, Aichi 464-8602, Japan. ; Laboratory of Protein Metabolism, Tokyo Metropolitan Institute of Medical Science, Setagaya-ku, Tokyo 156-8506, Japan. ; 1] Laboratory of Protein Metabolism, Tokyo Metropolitan Institute of Medical Science, Setagaya-ku, Tokyo 156-8506, Japan [2] Graduate School of Agriculture, Shizuoka University, 836 Ohya, Shizuoka 422-8529, Japan. ; Molecular Profiling Research Center for Drug Discovery, National Institute of Advanced Industrial Science and Technology, 2-4-7 Aomi, Koto-ku, Tokyo 135-0064, Japan. ; 1] JST-CREST/Department of Chemistry, Graduate School of Science, Nagoya University, Chikusa-ku, Nagoya 464-8602, Japan [2] JST-CREST/Faculty of Life Sciences, Kyoto Sangyo University, Kamigamo-motoyama, Kita-ku, Kyoto 603-8555, Japan. ; McGill Parkinson Program, Department of Neurology and Neurosurgery, Montreal Neurological Institute and Hospital, McGill University, Montreal, Quebec H3A 2B4, Canada. ; Department of Pharmacology & Therapeutics, McGill University, Montreal, Quebec H3G 1Y6, Canada. ; 1] Laboratory of Protein Metabolism, Tokyo Metropolitan Institute of Medical Science, Setagaya-ku, Tokyo 156-8506, Japan [2] Protein Metabolism Project, Tokyo Metropolitan Institute of Medical Science, Setagaya-ku, Tokyo 156-8506, Japan.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24784582" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Enzyme Activation ; Fibroblasts ; HeLa Cells ; Humans ; Membrane Potential, Mitochondrial ; Mice ; Mitochondria/metabolism ; Mutation/genetics ; Parkinson Disease ; Phosphorylation ; Phosphoserine/metabolism ; Protein Kinases/*metabolism ; Ubiquitin/chemistry/*metabolism ; Ubiquitin-Protein Ligases/genetics/*metabolism ; Ubiquitination
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 2
    Publication Date: 2013-09-11
    Description: Author(s): E. Kukk, D. Ayuso, T. D. Thomas, P. Decleva, M. Patanen, L. Argenti, E. Plésiat, A. Palacios, K. Kooser, O. Travnikova, S. Mondal, M. Kimura, K. Sakai, C. Miron, F. Martín, and K. Ueda We report an experimental and theoretical study of single-molecule inner-shell photoemission measured over an extended range of photon energies. The vibrational intensity ratios I ( ν =1)/ I ( ν =0) from the C 1 s photoelectron spectra of carbon monoxide, although mostly determined by the bond length change... [Phys. Rev. A 88, 033412] Published Tue Sep 10, 2013
    Keywords: Atomic and molecular processes in external fields, including interactions with strong fields and short pulses
    Print ISSN: 1050-2947
    Electronic ISSN: 1094-1622
    Topics: Physics
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  • 3
    Publication Date: 2011-03-31
    Description: Author(s): Naoki Kimura, Kunihiro Okada, Toshinobu Takayanagi, Michiharu Wada, Shunsuke Ohtani, and Hans A. Schuessler We investigated sympathetic Coulomb crystallization of CaH^{+} ions produced by a laser-induced reaction through an excited state according to ^{40} Ca^{+} (4p ^{2} P_{1/2} ) + H_{2} → ^{40} CaH^{+} + H. ^{40} CaH^{+} ions stored in a linear Paul trap were characterized by their secular-motion e... [Phys. Rev. A 83, 033422] Published Wed Mar 30, 2011
    Keywords: Atomic and molecular processes in external fields, including interactions with strong fields and short pulses
    Print ISSN: 1050-2947
    Electronic ISSN: 1094-1622
    Topics: Physics
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  • 4
    Publication Date: 2014-01-14
    Description: Author(s): Naoki Tsukamoto, Masashi Kimura, and Tomohiro Harada We study high energy particle collisions around higher dimensional black holes. It is shown that the center of mass energy can be arbitrarily large in the vicinity of the event horizon like the Bañados, Silk and West (BSW) process in four dimensions if the following two conditions are satisfied: (i)... [Phys. Rev. D 89, 024020] Published Mon Jan 13, 2014
    Keywords: General Relativity and Gravitation
    Print ISSN: 0556-2821
    Electronic ISSN: 1089-4918
    Topics: Physics
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  • 5
    Publication Date: 2014-02-26
    Description: Author(s): Yasuyuki Kimura and Ken Takazawa In a high magnetic field of 3–7 T, nitric oxide (NO) molecules are excited by the double-resonance method through the intermediate A2Σ+F1(v′′=0,N′′=0) level to the Landau levels in the energy region above the zero-field ionization limit to the NO+X1Σ+(v+=0,N+=0) ion. By detecting NO+ ions, the photo... [Phys. Rev. A 89, 023427] Published Mon Feb 24, 2014
    Keywords: Atomic and molecular processes in external fields, including interactions with strong fields and short pulses
    Print ISSN: 1050-2947
    Electronic ISSN: 1094-1622
    Topics: Physics
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  • 6
    Publication Date: 2014-10-04
    Description: Author(s): Yuki Kanou, Hideki Ishihara, Masashi Kimura, Ken Matsuno, and Takamitsu Tatsuoka We examine an exact solution which represents a charged black hole in a Kaluza-Klein universe in the five-dimensional Einstein-Maxwell theory. The spacetime approaches to the five-dimensional Kasner solution that describes a universe with the expanding three-dimensional space and the shrinking extra... [Phys. Rev. D 90, 084004] Published Fri Oct 03, 2014
    Keywords: General Relativity and Gravitation
    Print ISSN: 0556-2821
    Electronic ISSN: 1089-4918
    Topics: Physics
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  • 7
    Publication Date: 2014-12-04
    Description: Author(s): Ryo Shiose, Masashi Kimura, and Takeshi Chiba We study the motion of a charged particle around a weakly magnetized rotating black hole. We classify the fate of a charged particle kicked out from the innermost stable circular orbit. We find that the final fate of the charged particle depends mostly on the energy of the particle and the radius of... [Phys. Rev. D 90, 124016] Published Wed Dec 03, 2014
    Keywords: General Relativity and Gravitation
    Print ISSN: 0556-2821
    Electronic ISSN: 1089-4918
    Topics: Physics
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  • 8
    Publication Date: 2014-12-30
    Description: Author(s): Ken-ichi Nakao, Masashi Kimura, Tomohiro Harada, Mandar Patil, and Pankaj S. Joshi The angular momentum of the Kerr singularity should not be larger than a threshold value so that it is enclosed by an event horizon: The Kerr singularity with the angular momentum exceeding the threshold value is naked. This fact suggests that if the cosmic censorship exists in our Universe, an over... [Phys. Rev. D 90, 124079] Published Mon Dec 29, 2014
    Keywords: General Relativity and Gravitation
    Print ISSN: 0556-2821
    Electronic ISSN: 1089-4918
    Topics: Physics
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  • 9
    Publication Date: 2014-07-03
    Description: Author(s): Kentaro Takahashi and Yasuyuki Kimura We have studied the dynamics of micrometer-sized colloidal particles in electrohydrodynamic convection of nematic liquid crystal. Above the onset voltage of electroconvection, the parallel array of convection rolls appears to be perpendicular to the nematic field at first. The particles are forced t... [Phys. Rev. E 90, 012502] Published Wed Jul 02, 2014
    Keywords: Liquid Crystals
    Print ISSN: 1539-3755
    Electronic ISSN: 1550-2376
    Topics: Physics
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  • 10
    Publication Date: 2014-07-11
    Description: Author(s): Gregory Gabadadze, Rampei Kimura, and David Pirtskhalava Quasidilaton massive gravity is an extension of massive general relativity to a theory with additional scale invariance and approximate internal Galilean symmetry. The theory has a novel self-accelerated solution with the metric indistinguishable (in the decoupling limit) from the de Sitter space, i... [Phys. Rev. D 90, 024029] Published Thu Jul 10, 2014
    Keywords: General Relativity and Gravitation
    Print ISSN: 0556-2821
    Electronic ISSN: 1089-4918
    Topics: Physics
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