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  • Articles  (35)
  • Animals  (16)
  • Nuclear Structure  (13)
  • Surface physics, nanoscale physics, low-dimensional systems  (6)
  • 2010-2014  (33)
  • 1980-1984  (2)
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  • Articles  (35)
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  • 1
    Publication Date: 2014-05-03
    Description: PINK1 (PTEN induced putative kinase 1) and PARKIN (also known as PARK2) have been identified as the causal genes responsible for hereditary recessive early-onset Parkinsonism. PINK1 is a Ser/Thr kinase that specifically accumulates on depolarized mitochondria, whereas parkin is an E3 ubiquitin ligase that catalyses ubiquitin transfer to mitochondrial substrates. PINK1 acts as an upstream factor for parkin and is essential both for the activation of latent E3 parkin activity and for recruiting parkin onto depolarized mitochondria. Recently, mechanistic insights into mitochondrial quality control mediated by PINK1 and parkin have been revealed, and PINK1-dependent phosphorylation of parkin has been reported. However, the requirement of PINK1 for parkin activation was not bypassed by phosphomimetic parkin mutation, and how PINK1 accelerates the E3 activity of parkin on damaged mitochondria is still obscure. Here we report that ubiquitin is the genuine substrate of PINK1. PINK1 phosphorylated ubiquitin at Ser 65 both in vitro and in cells, and a Ser 65 phosphopeptide derived from endogenous ubiquitin was only detected in cells in the presence of PINK1 and following a decrease in mitochondrial membrane potential. Unexpectedly, phosphomimetic ubiquitin bypassed PINK1-dependent activation of a phosphomimetic parkin mutant in cells. Furthermore, phosphomimetic ubiquitin accelerates discharge of the thioester conjugate formed by UBCH7 (also known as UBE2L3) and ubiquitin (UBCH7 approximately ubiquitin) in the presence of parkin in vitro, indicating that it acts allosterically. The phosphorylation-dependent interaction between ubiquitin and parkin suggests that phosphorylated ubiquitin unlocks autoinhibition of the catalytic cysteine. Our results show that PINK1-dependent phosphorylation of both parkin and ubiquitin is sufficient for full activation of parkin E3 activity. These findings demonstrate that phosphorylated ubiquitin is a parkin activator.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Koyano, Fumika -- Okatsu, Kei -- Kosako, Hidetaka -- Tamura, Yasushi -- Go, Etsu -- Kimura, Mayumi -- Kimura, Yoko -- Tsuchiya, Hikaru -- Yoshihara, Hidehito -- Hirokawa, Takatsugu -- Endo, Toshiya -- Fon, Edward A -- Trempe, Jean-Francois -- Saeki, Yasushi -- Tanaka, Keiji -- Matsuda, Noriyuki -- Canadian Institutes of Health Research/Canada -- England -- Nature. 2014 Jun 5;510(7503):162-6. doi: 10.1038/nature13392. Epub 2014 Jun 4.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉1] Laboratory of Protein Metabolism, Tokyo Metropolitan Institute of Medical Science, Setagaya-ku, Tokyo 156-8506, Japan [2] Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba 277-8561, Japan. ; Division of Cell Signaling, Fujii Memorial Institute of Medical Sciences, The University of Tokushima, Tokushima 770-8503, Japan. ; Research Center for Materials Science, Nagoya University, Nagoya, Aichi 464-8602, Japan. ; Laboratory of Protein Metabolism, Tokyo Metropolitan Institute of Medical Science, Setagaya-ku, Tokyo 156-8506, Japan. ; 1] Laboratory of Protein Metabolism, Tokyo Metropolitan Institute of Medical Science, Setagaya-ku, Tokyo 156-8506, Japan [2] Graduate School of Agriculture, Shizuoka University, 836 Ohya, Shizuoka 422-8529, Japan. ; Molecular Profiling Research Center for Drug Discovery, National Institute of Advanced Industrial Science and Technology, 2-4-7 Aomi, Koto-ku, Tokyo 135-0064, Japan. ; 1] JST-CREST/Department of Chemistry, Graduate School of Science, Nagoya University, Chikusa-ku, Nagoya 464-8602, Japan [2] JST-CREST/Faculty of Life Sciences, Kyoto Sangyo University, Kamigamo-motoyama, Kita-ku, Kyoto 603-8555, Japan. ; McGill Parkinson Program, Department of Neurology and Neurosurgery, Montreal Neurological Institute and Hospital, McGill University, Montreal, Quebec H3A 2B4, Canada. ; Department of Pharmacology & Therapeutics, McGill University, Montreal, Quebec H3G 1Y6, Canada. ; 1] Laboratory of Protein Metabolism, Tokyo Metropolitan Institute of Medical Science, Setagaya-ku, Tokyo 156-8506, Japan [2] Protein Metabolism Project, Tokyo Metropolitan Institute of Medical Science, Setagaya-ku, Tokyo 156-8506, Japan.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24784582" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Enzyme Activation ; Fibroblasts ; HeLa Cells ; Humans ; Membrane Potential, Mitochondrial ; Mice ; Mitochondria/metabolism ; Mutation/genetics ; Parkinson Disease ; Phosphorylation ; Phosphoserine/metabolism ; Protein Kinases/*metabolism ; Ubiquitin/chemistry/*metabolism ; Ubiquitin-Protein Ligases/genetics/*metabolism ; Ubiquitination
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 2
    Publication Date: 2013-02-21
    Description: Author(s): Keisuke Kimura, Kentaro Shoji, Yuta Yamamoto, Wataru Norimatsu, and Michiko Kusunoki The formation of large-area homogeneous graphene on a C-terminated SiC (0001̅ ) surface was achieved via decomposition of the SiC (0001̅ ) surface covered with an ultrathin but much more stable TiC layer than the reactive SiC(0001̅ ). By heating the SiC (0001̅ ) surface w... [Phys. Rev. B 87, 075431] Published Wed Feb 20, 2013
    Keywords: Surface physics, nanoscale physics, low-dimensional systems
    Print ISSN: 1098-0121
    Electronic ISSN: 1095-3795
    Topics: Physics
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  • 3
    Publication Date: 2013-02-26
    Description: Author(s): Masahiro Isaka, Masaaki Kimura, Akinobu Doté, and Akira Ohnishi The excited states of Λ 25 Mg with the Λ hyperon in p orbit are studied within the framework of the antisymmetrized molecular dynamics for hypernuclei. We obtained five rotational bands in Λ 25 Mg in which the Λ hyperon in p orbit is coupled to the ground and K π =2 + bands of 24 Mg. We predict that the cor... [Phys. Rev. C 87, 021304] Published Mon Feb 25, 2013
    Keywords: Nuclear Structure
    Print ISSN: 0556-2813
    Electronic ISSN: 1089-490X
    Topics: Physics
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  • 4
    Publication Date: 2012-07-20
    Description: Author(s): S. Guo, Y. H. Zhang, X. H. Zhou, M. L. Liu, Y. X. Guo, Y. H. Qiang, Y. D. Fang, X. G. Lei, F. Ma, M. Oshima, Y. Toh, M. Koizumi, A. Osa, A. Kimura, Y. Hatsukawa, M. Sugawara, and H. Kusakari High-spin states in the odd-odd 174 Re have been investigated via the 152 Sm( 27  Al, 5 n γ ) 174 Re reaction with the help of excitation function, x- γ , and γ - γ coincidence measurements. Five rotational bands have been observed and their configurations were assigned based on alignments, band crossing frequen... [Phys. Rev. C 86, 014323] Published Thu Jul 19, 2012
    Keywords: Nuclear Structure
    Print ISSN: 0556-2813
    Electronic ISSN: 1089-490X
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  • 5
    Publication Date: 2012-03-07
    Description: Author(s): Masahiro Isaka, Hiroaki Homma, Masaaki Kimura, Akinobu Doté, and Akira Ohnishi The positive-parity states of Λ 25 Mg with a Λ hyperon in s orbit were studied with the antisymmetrized molecular dynamics for hypernuclei. We discuss two bands of Λ 25 Mg corresponding to the K π =0 + and 2 + bands of 24 Mg. It is found that the energy of the K π =2 + ⊗ Λ s band is shifted up by about 200 keV com... [Phys. Rev. C 85, 034303] Published Tue Mar 06, 2012
    Keywords: Nuclear Structure
    Print ISSN: 0556-2813
    Electronic ISSN: 1089-490X
    Topics: Physics
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  • 6
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    American Physical Society (APS)
    Publication Date: 2011-02-12
    Description: Author(s): N. Furutachi and M. Kimura The stability of the three-α linear-chain structure of ^{13} C has been investigated with a microscopic 3α+n model. We have found two excited rotational bands that have developed a three-α cluster structure in ^{13} C. The lower band built on 3/2_{2}^{-} state at 11.4 MeV has the bent three-α li... [Phys. Rev. C 83, 021303] Published Fri Feb 11, 2011
    Keywords: Nuclear Structure
    Print ISSN: 0556-2813
    Electronic ISSN: 1089-490X
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  • 7
    Publication Date: 2011-02-23
    Description: Author(s): H. Matsumiya, K. Tsubakihara, M. Kimura, A. Dote, and A. Ohnishi A theoretical framework of coupled-channels antisymmetrized molecular dynamics that describes the multistrangeness system with mixing between different baryon species is developed and applied to _{Λ}^{12} C and _{Ξ}^{12} Be. By introducing a minor modification to the YN G-matrix interaction derive... [Phys. Rev. C 83, 024312] Published Tue Feb 22, 2011
    Keywords: Nuclear Structure
    Print ISSN: 0556-2813
    Electronic ISSN: 1089-490X
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  • 8
    Publication Date: 2011-05-11
    Description: Author(s): Masahiro Isaka, Masaaki Kimura, Akinobu Doté, and Akira Ohnishi The low-lying states of _{ Λ}^{21} Ne are studied with antisymmetrized molecular dynamics for hypernuclei. We have obtained ten rotational bands where the number of bands are increased compared to ^{20} Ne by adding a Λ hyperon. Among them, we focus on the K^{π} =0_{1}^{+} ⊗Λ_{s} and K^{π} ... [Phys. Rev. C 83, 054304] Published Tue May 10, 2011
    Keywords: Nuclear Structure
    Print ISSN: 0556-2813
    Electronic ISSN: 1089-490X
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  • 9
    Publication Date: 2011-04-06
    Description: Author(s): M. Kimura and N. Furutachi The α-cluster structure of F isotopes has been studied based on antisymmetrized molecular dynamics. By using the constraint on the principal quantum number, various neutron configurations are investigated. It is found that a proton excitation into an sd shell does not necessarily induce α clusteri... [Phys. Rev. C 83, 044304] Published Tue Apr 05, 2011
    Keywords: Nuclear Structure
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    Electronic ISSN: 1089-490X
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  • 10
    Publication Date: 2011-04-28
    Description: Author(s): M. Isaka, M. Kimura, A. Dote, and A. Ohnishi An extended version of antisymmetrized molecular dynamics was developed to study the structure of p-sd shell hypernuclei. By using an effective ΛN interaction, we investigated the energy curves of _{Λ}^{9} Be, _{Λ}^{13} C, and ^{20,} _{ Λ}^{21} Ne as a function of nuclear quadrupole deformatio... [Phys. Rev. C 83, 044323] Published Wed Apr 27, 2011
    Keywords: Nuclear Structure
    Print ISSN: 0556-2813
    Electronic ISSN: 1089-490X
    Topics: Physics
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