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  • 1
    Publication Date: 2003-02-08
    Description: We report the design and total chemical synthesis of "synthetic erythropoiesis protein" (SEP), a 51-kilodalton protein-polymer construct consisting of a 166-amino-acid polypeptide chain and two covalently attached, branched, and monodisperse polymer moieties that are negatively charged. The ability to control the chemistry allowed us to synthesize a macromolecule of precisely defined covalent structure. SEP was homogeneous as shown by high-resolution analytical techniques, with a mass of 50,825 +/-10 daltons by electrospray mass spectrometry, and with a pI of 5.0. In cell and animal assays for erythropoiesis, SEP displayed potent biological activity and had significantly prolonged duration of action in vivo. These chemical methods are a powerful tool in the rational design of protein constructs with potential therapeutic applications.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kochendoerfer, Gerd G -- Chen, Shiah-Yun -- Mao, Feng -- Cressman, Sonya -- Traviglia, Stacey -- Shao, Haiyan -- Hunter, Christie L -- Low, Donald W -- Cagle, E Neil -- Carnevali, Maia -- Gueriguian, Vincent -- Keogh, Peter J -- Porter, Heather -- Stratton, Stephen M -- Wiedeke, M Con -- Wilken, Jill -- Tang, Jie -- Levy, Jay J -- Miranda, Les P -- Crnogorac, Milan M -- Kalbag, Suresh -- Botti, Paolo -- Schindler-Horvat, Janice -- Savatski, Laura -- Adamson, John W -- Kung, Ada -- Kent, Stephen B H -- Bradburne, James A -- New York, N.Y. -- Science. 2003 Feb 7;299(5608):884-7.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Gryphon Therapeutics, 250 East Grand Avenue, Suite 90, South San Francisco, CA 94080, USA. Gkochendoerfer@gryphonRX.com〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12574628" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acid Sequence ; Animals ; Cell Line ; Circular Dichroism ; *Drug Design ; Drug Stability ; Electrophoresis, Polyacrylamide Gel ; *Erythropoiesis ; Erythropoietin/chemistry/pharmacology ; Hematocrit ; Humans ; Isoelectric Point ; Mice ; Molecular Sequence Data ; Molecular Structure ; Molecular Weight ; *Polymers/*chemical synthesis/*chemistry/pharmacokinetics/pharmacology ; Protein Folding ; Proteins/*chemical synthesis/*chemistry/pharmacokinetics/pharmacology ; Rats ; Receptors, Erythropoietin/drug effects/metabolism ; Recombinant Proteins ; Spectrometry, Mass, Electrospray Ionization
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 2
    Publication Date: 2012-01-24
    Description: Hypertension affects one billion people and is a principal reversible risk factor for cardiovascular disease. Pseudohypoaldosteronism type II (PHAII), a rare Mendelian syndrome featuring hypertension, hyperkalaemia and metabolic acidosis, has revealed previously unrecognized physiology orchestrating the balance between renal salt reabsorption and K(+) and H(+) excretion. Here we used exome sequencing to identify mutations in kelch-like 3 (KLHL3) or cullin 3 (CUL3) in PHAII patients from 41 unrelated families. KLHL3 mutations are either recessive or dominant, whereas CUL3 mutations are dominant and predominantly de novo. CUL3 and BTB-domain-containing kelch proteins such as KLHL3 are components of cullin-RING E3 ligase complexes that ubiquitinate substrates bound to kelch propeller domains. Dominant KLHL3 mutations are clustered in short segments within the kelch propeller and BTB domains implicated in substrate and cullin binding, respectively. Diverse CUL3 mutations all result in skipping of exon 9, producing an in-frame deletion. Because dominant KLHL3 and CUL3 mutations both phenocopy recessive loss-of-function KLHL3 mutations, they may abrogate ubiquitination of KLHL3 substrates. Disease features are reversed by thiazide diuretics, which inhibit the Na-Cl cotransporter in the distal nephron of the kidney; KLHL3 and CUL3 are expressed in this location, suggesting a mechanistic link between KLHL3 and CUL3 mutations, increased Na-Cl reabsorption, and disease pathogenesis. These findings demonstrate the utility of exome sequencing in disease gene identification despite the combined complexities of locus heterogeneity, mixed models of transmission and frequent de novo mutation, and establish a fundamental role for KLHL3 and CUL3 in blood pressure, K(+) and pH homeostasis.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3278668/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3278668/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Boyden, Lynn M -- Choi, Murim -- Choate, Keith A -- Nelson-Williams, Carol J -- Farhi, Anita -- Toka, Hakan R -- Tikhonova, Irina R -- Bjornson, Robert -- Mane, Shrikant M -- Colussi, Giacomo -- Lebel, Marcel -- Gordon, Richard D -- Semmekrot, Ben A -- Poujol, Alain -- Valimaki, Matti J -- De Ferrari, Maria E -- Sanjad, Sami A -- Gutkin, Michael -- Karet, Fiona E -- Tucci, Joseph R -- Stockigt, Jim R -- Keppler-Noreuil, Kim M -- Porter, Craig C -- Anand, Sudhir K -- Whiteford, Margo L -- Davis, Ira D -- Dewar, Stephanie B -- Bettinelli, Alberto -- Fadrowski, Jeffrey J -- Belsha, Craig W -- Hunley, Tracy E -- Nelson, Raoul D -- Trachtman, Howard -- Cole, Trevor R P -- Pinsk, Maury -- Bockenhauer, Detlef -- Shenoy, Mohan -- Vaidyanathan, Priya -- Foreman, John W -- Rasoulpour, Majid -- Thameem, Farook -- Al-Shahrouri, Hania Z -- Radhakrishnan, Jai -- Gharavi, Ali G -- Goilav, Beatrice -- Lifton, Richard P -- KL2 RR024138/RR/NCRR NIH HHS/ -- KL2 RR024138-07/RR/NCRR NIH HHS/ -- P30 DK079310/DK/NIDDK NIH HHS/ -- P30 DK079310-04S1/DK/NIDDK NIH HHS/ -- P30-DK079310/DK/NIDDK NIH HHS/ -- UL1-RR024139/RR/NCRR NIH HHS/ -- Howard Hughes Medical Institute/ -- England -- Nature. 2012 Jan 22;482(7383):98-102. doi: 10.1038/nature10814.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Genetics and Howard Hughes Medical Institute, Yale University School of Medicine, New Haven, Connecticut 06510, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22266938" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acid Sequence ; Animals ; Base Sequence ; Blood Pressure/genetics ; Carrier Proteins/chemistry/*genetics ; Cohort Studies ; Cullin Proteins/chemistry/*genetics ; Electrolytes ; Exons/genetics ; Female ; Gene Expression Profiling ; Genes, Dominant/genetics ; Genes, Recessive/genetics ; Genotype ; Homeostasis/genetics ; Humans ; Hydrogen-Ion Concentration ; Hypertension/complications/*genetics/physiopathology ; Male ; Mice ; Models, Molecular ; Molecular Sequence Data ; Mutation/*genetics ; Phenotype ; Potassium/metabolism ; Pseudohypoaldosteronism/complications/*genetics/physiopathology ; Sodium Chloride/metabolism ; Water-Electrolyte Imbalance/complications/*genetics/physiopathology
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 3
    Publication Date: 2012-05-12
    Description: R-spondin proteins strongly potentiate Wnt signalling and function as stem-cell growth factors. Despite the biological and therapeutic significance, the molecular mechanism of R-spondin action remains unclear. Here we show that the cell-surface transmembrane E3 ubiquitin ligase zinc and ring finger 3 (ZNRF3) and its homologue ring finger 43 (RNF43) are negative feedback regulators of Wnt signalling. ZNRF3 is associated with the Wnt receptor complex, and inhibits Wnt signalling by promoting the turnover of frizzled and LRP6. Inhibition of ZNRF3 enhances Wnt/beta-catenin signalling and disrupts Wnt/planar cell polarity signalling in vivo. Notably, R-spondin mimics ZNRF3 inhibition by increasing the membrane level of Wnt receptors. Mechanistically, R-spondin interacts with the extracellular domain of ZNRF3 and induces the association between ZNRF3 and LGR4, which results in membrane clearance of ZNRF3. These data suggest that R-spondin enhances Wnt signalling by inhibiting ZNRF3. Our study provides new mechanistic insights into the regulation of Wnt receptor turnover, and reveals ZNRF3 as a tractable target for therapeutic exploration.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hao, Huai-Xiang -- Xie, Yang -- Zhang, Yue -- Charlat, Olga -- Oster, Emma -- Avello, Monika -- Lei, Hong -- Mickanin, Craig -- Liu, Dong -- Ruffner, Heinz -- Mao, Xiaohong -- Ma, Qicheng -- Zamponi, Raffaella -- Bouwmeester, Tewis -- Finan, Peter M -- Kirschner, Marc W -- Porter, Jeffery A -- Serluca, Fabrizio C -- Cong, Feng -- England -- Nature. 2012 Apr 29;485(7397):195-200. doi: 10.1038/nature11019.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Novartis Institutes for Biomedical Research, 250 Massachusetts Avenue, Cambridge, Massachusetts 02139, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22575959" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Cell Polarity/physiology ; Colorectal Neoplasms/genetics ; DNA-Binding Proteins/deficiency/genetics/metabolism ; Feedback, Physiological ; Female ; Frizzled Receptors/metabolism ; HEK293 Cells ; Humans ; Low Density Lipoprotein Receptor-Related Protein-6/metabolism ; Male ; Mice ; Mice, Knockout ; Oncogene Proteins/deficiency/genetics/metabolism ; Protein Stability ; Protein Structure, Tertiary ; Receptors, G-Protein-Coupled/deficiency/genetics/metabolism ; Receptors, Wnt/*metabolism ; Thrombospondins/*metabolism ; Ubiquitin-Protein Ligases/chemistry/*deficiency/genetics/*metabolism ; Ubiquitination ; Wnt Signaling Pathway ; Xenopus ; Zebrafish ; beta Catenin/metabolism
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 4
    Publication Date: 2013-08-29
    Description: In our Numerical Spectral Model (NSM), which incorporates Hines' Doppler Spread Parameterization, gravity waves (GW) propagating in the east/west direction can generate the essential features of the observed equatorial oscillations in the zonal circulation and in particular the QBO (quasi-biennial oscillation) extending from the stratosphere into the upper mesosphere. We report here that the NSM also produces inter-seasonal variations in the zonally symmetric (m = 0) meridional circulation. A distinct but variable meridional wind oscillation (MWO) is generated, which appears to be the counterpart to the QBO. With a vertical grid-point resolution of about 0.5 km, the NSM produces the MWO through momentum deposition of GWs propagating in the north/south direction. The resulting momentum source represents a third (generally odd) order non-linear function of the meridional winds, and this enables the oscillation, as in the case of the QBO for the zonal winds. Since the meridional winds are relatively small compared to the zonal winds, however, the vertical wavelength that maintains the MWO is much smaller, i.e., only about 10 km instead of 40 km for the QBO. Consistent with the associated increase of the viscous stress, the period of the MWO is then short compared with that of the QBO, i.e., only about two to four months. Depending on the strength of the GW forcing, the computed amplitudes of the MWO are typically 4 m/s in the upper stratosphere and mesosphere, and the associated temperature amplitudes are between about 2 and 3 K. These amplitudes may be observable with the instruments on the TIMED spacecraft. Extended computer simulations with the NSM in 2D (two-dimensional) and 3D (three-dimensional) reveal that the MWO is modulated by and in turn influences the QBO.
    Keywords: Environment Pollution
    Format: application/pdf
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  • 5
    Publication Date: 2019-07-18
    Description: In our Numerical Spectral Model (NSM), which incorporates Hines' Doppler Spread Parameterization, gravity waves (GW) propagating in the east/west direction can generate the essential features of the observed equatorial oscillations of the zonal circulation and in particular the QBO (quasi-biennial oscillation) extending from the stratosphere into the upper mesosphere. We report here that the NSM also produces inter-seasonal variations in the zonally symmetric meridional circulation. A distinct meridional oscillation (MO) is generated, which appears to be the counterpart to the QBO. With a vertical grid-point resolution of about 0.5 km, the NSM produces the MO through momentum deposition of GW's propagating in the north/south direction. This process is inherently non-linear, of third (odd) order, which enables the oscillation. Since the meridional winds are relatively small compared to the zonal winds, the vertical wavelength required to maintain the MO is also smaller, i.e., only about 10 km instead of the 30 km for the QBO. The corresponding viscous stress is then larger, and the period of the MO is thus short compared with that of the QBO, i.e., only about 3 to 4 months. Depending on the strength of the GW forcing, the computed amplitudes of the meridional wind oscillation are typically 5 m/s in the upper stratosphere and mesosphere, and the associated temperature amplitudes are between about 2 and 3 K. These amplitudes may be observable with the instruments on the TIMED spacecraft. Extended computer simulations with the NSM in 2D and 3D reveal that the MO at low latitudes is modulated by the QBO and in turn can influence it to produce a hemispherically asymmetric component. The annual circulation from the summer to the winter hemisphere is likely to play an important role.
    Keywords: Environment Pollution
    Type: 2002 Spring AGU; May 28, 2002 - May 31, 2002; Washington, DC; United States
    Format: text
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  • 6
    Publication Date: 2019-07-18
    Description: Quasi-decadal oscillations (QDO) have been observed in the stratosphere and have been linked to the equatorial Quasi-Biennial Oscillation (QBO) and to the 11-year solar activity cycle. With the use of a 2D version of our Numerical Spectral Model (NSM) that incorporates Hines'Doppler Spread Parameterization (DSP) for gravity waves (GW), we demonstrate that beat periods between 9 and I I years can be generated by the QBO as it interacts through GW filtering with the Annual Oscillation (AO) and Semi-annual Oscillation (SAO). Results are discussed from computations covering up to 50 years, and our analyses leads to the following conclusions. The QDO as a stand-alone signature is largely confined to the upper mesosphere. Its largest signature appears in the form of amplitude modulations of the QBO, AO and SAO, and these extend into the lower stratosphere. The downward control that characterizes the QBO apparently comes into play, and the longer time constants for diffusion and radiative loss at lower altitudes facilitate the QDO response. Although excited by the QBO, which is confined to low latitudes, the QDO is shown to extend to high latitudes. The effect is particularly large for the QBO with period around 33.5 month (near the upper limit of observations), which interacts with the SAO to produce a hemispherically symmetric QDO. Our analysis indicates that the QDO is transferred to high latitudes by the meridional circulation, which prominently exhibits this periodicity particularly in the amplitude modulation of the AO. The propensity for beat periods around 10 years may help to increase significantly the efficiency for generating solar cycle signatures in the atmosphere, and we discuss numerical experiments related to that.
    Keywords: Environment Pollution
    Type: 2001 Fall AGU Meeting; Dec 10, 2001 - Dec 14, 2001; San Francisco, CA; United States
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  • 7
    Publication Date: 2019-07-18
    Description: Applying Hines Doppler Spread Parameterization for gravity waves (GW), our 3D model reproduces some essential features that characterize the observed seasonal variations of tides and planetary waves in the upper mesosphere. In 2D, our model also reproduces the large Semi-Annual Oscillation (SAO) and Quasi Biennial Oscillation (QBO) observed in this region at low latitudes. It is more challenging to describe these features combined in a more comprehensive self consistent model, and we give a progress report that outlines the difficulties and reports some success. In 3D, the GW's are partially absorbed by tides and planetary waves to amplify them. Thus the waves are less efficient in generating the QBO and SAO at equatorial latitudes. Some of this deficiency is compensated by the fact that the GW activity is observed to be enhanced at low latitudes. Increasing the GW source has the desired effect to boost the QBO, but the effect is confined primarily to the stratosphere. With increasing altitude, the meridional circulation becomes more important in redistributing the momentum deposited in the background flow by the GW's. Another factor involved is the altitude at which the GW's originate, which we had originally chosen to be the surface. Numerical experiments show that moving this source altitude to the top of the troposphere significantly increases the efficiency for generating the QBO without affecting much the tides and planetary waves in the model. Attention to the details in which the GW source comes into play thus appears to be of critical importance in modeling the phenomenology of the MLT. Among the suite of numerical experiments reported, we present a simulation that produced significant variations of tides and planetary waves in the upper mesosphere. The effect is related to the QBO generated in the model, and GW filtering is the likely cause.
    Keywords: Environment Pollution
    Type: 2001 Fall AGU Meeting; Dec 10, 2001 - Dec 14, 2001; San Francisco, CA; United States
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  • 8
    Publication Date: 2019-08-15
    Description: Due to the complexity of atmospheric aerosol, validation efforts are required to test satellite retrievals. Here we give an overview of our aircraft and ship validation measurements near Hawaii. Some examples of the measurements are shown which illustrate some of the variability we have encountered, This effort is ongoing and can provide important background measurements for satellite validation as well as radiation studies.
    Keywords: Environment Pollution
    Type: Optical Remote Sensing of the Atmosphere and Clouds II; 4150; 274-281
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