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  • MDPI  (1)
  • National Academy of Sciences  (1)
  • 2015-2019  (2)
  • 1
    Publication Date: 2019-11-15
    Description: Wnt signaling through both canonical and noncanonical pathways plays a core role in development. Dysregulation of these pathways often causes cancer development and progression. Although the pathways independently contribute to the core processes, a regulatory molecule that commonly activates both of them has not yet been reported. Here, we describe a long noncoding RNA (lncRNA), HERES, that epigenetically regulates both canonical and noncanonical Wnt signaling pathways in esophageal squamous cell carcinoma (ESCC). For this study, we performed RNA-seq analysis on Korean ESCC patients and validated these results on a larger ESCC cohort to identify lncRNAs commonly dysregulated in ESCCs. Six of the dysregulated lncRNAs were significantly associated with the clinical outcomes of ESCC patients and defined 4 ESCC subclasses with different prognoses. HERES reduction repressed cell proliferation, migration, invasion, and colony formation in ESCC cell lines and tumor growth in xenograft models. HERES appears to be a transacting factor that regulates CACNA2D3, SFRP2, and CXXC4 simultaneously to activate Wnt signaling pathways through an interaction with EZH2 via its G-quadruple structure-like motif. Our results suggest that HERES holds substantial potential as a therapeutic target for ESCC and probably other cancers caused by defects in Wnt signaling pathways.
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 2
    Publication Date: 2019
    Description: Changes in the microenvironment driven by forest gaps have profound effects on soil nutrient cycling and litter decomposition processes in alpine forest ecosystems. However, it is unclear whether a similar forest gap effect occurs in the soil decomposer community. A field experiment was conducted in an alpine forest to investigate the composition and structure of the soil nematode community among four treatments, including under a closed canopy and in small (〈10 m in diameter), medium (10–15 m in diameter), and large (15–20 m in diameter) gaps. A total of 92,787 individuals and 27 species (genera level) of soil nematode were extracted by elutriation and sugar centrifugation, respectively. Filenchus was the most abundant dominant taxa and represented 24.27–37.51% of the soil nematodes in the four treatments. Compared to the closed canopy, the forest gaps did not affect the composition, abundance, or species diversity of the soil nematode community but significantly affected the functional diversity of the soil nematode community. The maturity indices (MI, ∑MI, and MI2‒5) of the soil nematode community in the closed canopy were significantly lower than those in the forest gaps. Moreover, the proportion of plant parasitic index and maturity index (PPI/MI) values of the closed canopy and small gaps were significantly higher than those of the medium and large gaps. Our results suggest that the forest gap size substantially alters the functional diversity of soil nematodes in the debris food web, and changes in soil nematode community structure due to gap formation may have profound effects on soil biogeochemical processes in alpine forests.
    Electronic ISSN: 1999-4907
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Published by MDPI
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