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  • PANGAEA  (19)
  • Copernicus  (2)
  • 2015-2019  (21)
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  • 1
    Publication Date: 2018-10-10
    Description: Long chain alkyl diols (LCDs) are widespread in the marine water column and sediments, but their biological sources are mostly unknown. Here we combine lipid analyses with 18S rRNA gene amplicon sequencing on suspended particulate matter (SPM) collected in the photic zone of the western tropical North Atlantic Ocean at 24 stations to infer relationships between LCDs and potential LCD producers. The C30 1,15-diol was detected in all SPM samples and accounted for 〉95 % of the total LCDs, while minor proportions of C28 and C30 1,13-diols, C28 and C30 1,14-diols, as well as C32 1,15-diol were found. The concentration of the C30 and C32 diols was higher in the mixed layer of the water column compared to the deep chlorophyll maximum (DCM), whereas concentrations of C28 diols were comparable. Sequencing analyses revealed extremely low contributions (≈0.1 % of the 18S rRNA gene reads) of known LCD producers, but the contributions from two taxonomic classes with which known producers are affiliated, i.e. Dictyochophyceae and Chrysophyceae, followed a trend similar to that of the concentrations of C30 and C32 diols. Statistical analyses indicated that the abundance of 4 operational taxonomic units (OTUs) of the Chrysophyceae and Dictyochophyceae, along with 23 OTUs falling into other phylogenetic groups, were weakly (r≤0.6) but significantly (p value 
    Print ISSN: 1726-4170
    Electronic ISSN: 1726-4189
    Topics: Biology , Geosciences
    Published by Copernicus on behalf of European Geosciences Union.
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  • 2
    Publication Date: 2019-05-06
    Description: Microbial mats are self-sustaining benthic ecosystems composed of highly diverse microbial communities. It has been proposed that microbial mats were widespread in Proterozoic marine environments, prior to the emergence of bioturbating organisms at the Precambrian-Cambrian transition. One characteristic feature of Precambrian biomarker records is that steranes are typically absent or occur in very low concentrations. This has been explained by low eukaryotic source inputs, or degradation of primary produced sterols in benthic microbial mats (mat-seal effect). To better understand the preservational pathways of sterols in microbial mats we analysed freely extractable and carbonate-bound sterols as well as decalcified extraction residues in different layers of a recent calcifying mat (~ 1500 years) from the hypersaline Lake 2 on the island of Kiritimati, Central Pacific. A variety of C27–C29 sterols and distinctive C31 4α-methylsterols (4α-methylgorgosterol and 4α-methylgorgostanol, biomarkers for dinoflagellates) were detected in both lipid pools. These sterols most likely originated from organisms living in the water column and the upper mat layers. This autochthonous biomass experienced progressive microbial transformation and degradation in the microbial mat, as reflected by a significant drop in total sterols concentrations, up to 98 %, in the deeper layers, and a concomitant decrease in total organic carbon. Carbonate-bound sterols were generally low in abundance, suggesting that incorporation into the mineral matrix does not play a major role for the preservation of eukaryotic sterols in this mat. Likewise, pyrolysis revealed that steroids (i.e., including sterenes, steranes and sterols), in contrast to hopanoids, were not sequestered into insoluble organic matter which may give rise to a further bias in the preservation of steroids vs. hopanoids, particularly in the later stages of burial. While these findings argue for a strong 'mat-seal effect' in the mat studied, they markedly differ from recent findings made for another microbial mat growing in the near-by hypersaline Lake 22 on the same island, where sterols showed no systematic decrease with depth. The observed discrepancies in the taphonomic pathways of sterols in microbial mats from Kiritimati may be linked to multiple biotic and abiotic factors including salinity and periods of subaerial exposure, implying that caution has to be exercised in the interpretation of sterols distributions in modern and ancient microbial mat settings.
    Print ISSN: 1810-6277
    Electronic ISSN: 1810-6285
    Topics: Biology , Geosciences
    Published by Copernicus on behalf of European Geosciences Union.
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  • 3
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    PANGAEA
    In:  Supplement to: Rodrigo-Gámiz, Marta; Rampen, Sebastiaan W; de Haas, Henk; Baas, Marianne; Schouten, Stefan; Sinninghe Damsté, Jaap S (2015): Constraints on the applicability of the organic temperature proxies UK'37, TEX86 and LDI in the subpolar region around Iceland. Biogeosciences, 12(22), 6573-6590, https://doi.org/10.5194/bg-12-6573-2015
    Publication Date: 2023-01-13
    Description: Subpolar regions are key areas to study natural climate variability, due to their high sensitivity to rapid environmental changes, particularly through sea surface temperature (SST) variations. Here, we have tested three independent organic temperature proxies (UK'37, TEX86 and LDI) on their potential applicability for SST reconstruction in the subpolar region around Iceland. UK'37, TEX86 and TEXL86 temperature estimates from suspended particulate matter showed a substantial discrepancy with instrumental data, while long chain alkyl diols were below detection limit in most of the stations. In the northern Iceland Basin, sedimenting particles revealed a seasonality in lipid fluxes i.e. high fluxes of alkenones and GDGTs were measured during late spring-summer, and high fluxes of long chain alkyl diols during late summer. The flux-weighted average temperature estimates had a significant negative (ca. 2.3°C for UK'37) and positive (up to 5°C for TEX86) offset with satellite-derived SSTs and temperature estimates derived from the underlying surface sediment. UK'37 temperature estimates from surface sediments around Iceland correlate well with summer mean sea surface temperatures, while TEX86 derived temperatures correspond with both annual and winter mean 0-200 m temperatures, suggesting a subsurface temperature signal. Anomalous LDI-SST values in surface sediments, and low mass flux of 1,13- and 1,15-diols compared to 1,14-diols, suggest that Proboscia diatoms are the major sources of long chain alkyl diols in this area rather than eustigmatophyte algae, and therefore the LDI cannot be applied in this region.
    Type: Dataset
    Format: application/zip, 4 datasets
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  • 4
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    PANGAEA
    In:  Supplement to: Rodrigo-Gámiz, Marta; Rampen, Sebastiaan W; Schouten, Stefan; Sinninghe Damsté, Jaap S (2016): The impact of oxic degradation on long chain alkyl diol distributions in Arabian Sea surface sediments. Organic Geochemistry, 100, 1-9, https://doi.org/10.1016/j.orggeochem.2016.07.003
    Publication Date: 2023-03-03
    Description: Oxygen exposure has a large impact on lipid biomarker preservation in surface sediments and may affect the application of organic proxies used for reconstructing past environmental conditions. To determine its effect on long chain alkyl diol and keto-ol based proxies, the distributions of these lipids was studied in nine surface sediments from the Murray Ridge in the Arabian Sea obtained from varying water depths (900 to 3000 m) but in close lateral proximity and, therefore, likely receiving a similar particle flux. Due to substantial differences in bottom water oxygen concentration (〈3 to 77 µmol/L) and sedimentation rate, substantial differences exist in the time the biomarker lipids are exposed to oxygen in the sediment. Long chain alkyl diol and keto-ol concentrations in the surface sediments (0-0.5 cm) decreased progressively with increasing oxygen exposure time, suggesting increased oxic degradation. The 1,15-keto-ol/diol ratio (DOXI) increased slightly with oxygen exposure time as diols had apparently slightly higher degradation rates than keto-ols. The ratio of 1,14- vs. 1,13- or 1,15-diols, used as upwelling proxies, did not show substantial changes. However, the C30 1,15-diol exhibited a slightly higher degradation rate than C28 and C30 1,13-diols, and thus the Long chain Diol Index (LDI), used as sea surface temperature proxy, showed a negative correlation with the maximum residence time in the oxic zone of the sediment, resulting in ca. 2-3.5 °C change, when translated to temperature. The UK'37 index did not show significant changes with increasing oxygen exposure. This suggests that oxic degradation may affect temperature reconstructions using the LDI in oxic settings and where oxygen concentrations have varied substantially over time.
    Keywords: 64PE301; Alkenone, C37:2; Alkenone, C37:3; Alkenone, unsaturation index UK'37; BC; Box corer; C30 1,15-keto-ol; C32 1,15-keto-ol; C34 1,15-keto-ol; Calculated after Rampen et al. (2012); Calculated from UK'37 (Müller et al, 1998); Carbon, organic, per unit sediment mass; Carbon, organic, total; DEPTH, sediment/rock; Diol oxidation index; Diol upwelling index; Elevation of event; Event label; Latitude of event; Long chain diol, C28:1 1,14-diol; Long chain diol, C28 1,13-diol; Long chain diol, C28 1,14-diol; Long chain diol, C30:1 1,14-diol; Long chain diol, C30 1,13-diol; Long chain diol, C30 1,14-diol; Long chain diol, C30 1,15-diol; Long chain diol, C32 1,15-diol; Long chain diol index; Longitude of event; Northern Arabian Sea; Oxygen penetration depth; PA1000; PA1200; PA1300; PA1500; PA1800; PA2000; PA2500; PA3000; PA900; PASOM; Pelagia; Residence time; Sea surface temperature, annual mean
    Type: Dataset
    Format: text/tab-separated-values, 358 data points
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  • 5
    Publication Date: 2023-03-03
    Keywords: 64PE341; Acyclic glycerol dialkyl glycerol tetraether, flux; Alkenone, C37:2+C37:3, flux; C28+C30 1,14-diols, flux; Crenarchaeol, flux; DATE/TIME; DEPTH, water; Flux of total mass; LCD01-1; Long chain diol index, flux; Long-Chain Diols 2011; Pelagia; Sample code/label; South off Iceland; Tetraether index of 86 carbon atoms of glycerol dialkyl glycerol tetraethers, flux; Trap, sediment; TRAPS; Unsaturated C28:1+C30:1 1,14-diol, flux
    Type: Dataset
    Format: text/tab-separated-values, 188 data points
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  • 6
    Publication Date: 2023-06-27
    Keywords: 64PE341; 64PE357; Alkenone, unsaturation index UK'37; Calculated from LDI (Rampen et al., 2012); Calculated from TEX86 (Kim et al., 2010); Calculated from UK'37 (Müller et al, 1998); Date/Time of event; DEPTH, water; DIOLS-Trap Recovery; Event label; extracted from the World Ocean Atlas 2009 (WOA09); Latitude of event; LCD_A; LCD_B; LCD_C; LCD_D; LCD_E; LCD_F; LCD_G; LCD01-2; LCD07-2; LCD08-2; LCD10-2; LCD13-2; LCD16-2; Long chain diol index; Long-Chain Diols 2011; Longitude of event; Measured in situ; PCTD-RO; Pelagia; PUMP; PumpCTD/Rosette; Satellite derived; Sea surface temperature; Sea surface temperature, July; Sea surface temperature, summer; South off Iceland; Tetraether index of 86 carbon atoms; Tetraether index of 86 carbon atoms, low-temperature region; Water pump
    Type: Dataset
    Format: text/tab-separated-values, 118 data points
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  • 7
    Publication Date: 2024-01-09
    Keywords: AGE; Bass_River_Site; BR; DEPTH, sediment/rock; DRILL; Drilling/drill rig; Leg174AX; Long chain diol, C26 1,12-diol, fractional abundance; Long chain diol, C26 1,13-diol, fractional abundance; Long chain diol, C26 1,14-diol, fractional abundance; Long chain diol, C28 1,12-diol, fractional abundance; Long chain diol, C28 1,13-diol, fractional abundance; Long chain diol, C28 1,14-diol, fractional abundance; Long chain diol, C30 1,12-diol, fractional abundance; Long chain diol, C30 1,13-diol, fractional abundance; Long chain diol, C30 1,14-diol, fractional abundance; Long chain diol, C30 1,15-diol, fractional abundance; Long chain diol, C30 1,16-diol, fractional abundance; Long chain diol, C30 1,17-diol, fractional abundance; Long chain diol, C32 1,13-diol, fractional abundance; Long chain diol, C32 1,15-diol, fractional abundance; Long chain diol, C32 1,16-diol, fractional abundance; Long chain diol, C34 1,15-diol, fractional abundance; Long chain diol, C34 1,17-diol, fractional abundance; Long chain keto-ols, C26 1,13, fractional abundance; Long chain keto-ols, C28 1,12, fractional abundance; Long chain keto-ols, C30 1,15, fractional abundance; Long chain keto-ols, C32 1,15, fractional abundance; Long chain keto-ols, C34 1,15, fractional abundance; Long chain keto-ols, C34 1,17, fractional abundance; Long chain keto-ols, C36 1,19, fractional abundance; NIOZ_UU; NIOZ Royal Netherlands Institute for Sea Research, and Utrecht University; North American East Coast; Ocean Drilling Program; ODP; see reference(s)
    Type: Dataset
    Format: text/tab-separated-values, 300 data points
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  • 8
    Publication Date: 2024-01-09
    Keywords: AGE; Bass_River_Site; BR; DEPTH, sediment/rock; DRILL; Drilling/drill rig; Leg174AX; Long chain diol, C32 1,15-diol, fractional abundance; Long chain diol index; NIOZ_UU; NIOZ Royal Netherlands Institute for Sea Research, and Utrecht University; North American East Coast; Ocean Drilling Program; ODP
    Type: Dataset
    Format: text/tab-separated-values, 77 data points
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  • 9
    Publication Date: 2023-12-18
    Keywords: 64PE341; Alkenone, unsaturation index UK'37; Calculated from LDI (Rampen et al., 2012); Calculated from TEX86 (Kim et al., 2010); Calculated from TEX86H (Kim et al., 2012); Calculated from UK'37 (Müller et al, 1998); DATE/TIME; DEPTH, water; extracted from the World Ocean Atlas 2009 (WOA09); LCD01-1; Long chain diol index; Long-Chain Diols 2011; Pelagia; Sample code/label; Satellite derived; Sea surface temperature; South off Iceland; Tetraether index of 86 carbon atoms; Tetraether index of 86 carbon atoms, low-temperature region; Trap, sediment; TRAPS
    Type: Dataset
    Format: text/tab-separated-values, 222 data points
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  • 10
    Publication Date: 2023-12-18
    Keywords: 64PE341; Alkenone, unsaturation index UK'37; Calculated from LDI (Rampen et al., 2012); Calculated from TEX86 (Kim et al., 2010); Calculated from TEX86H (Kim et al., 2012); Calculated from UK'37 (Müller et al, 1998); DEPTH, sediment/rock; Elevation of event; Event label; extracted from the World Ocean Atlas 2009 (WOA09); Latitude of event; LCD01-3; LCD03-3; LCD05-3; LCD06-3; LCD07-3; LCD08-3; LCD10-3; LCD11-3; LCD13-3; LCD14-3; Long chain diol index; Long-Chain Diols 2011; Longitude of event; MUC; MultiCorer; Pelagia; Sample code/label; Sea surface temperature; Sea surface temperature, annual mean; Sea surface temperature, summer; Sea surface temperature, winter; South off Iceland; Tetraether index of 86 carbon atoms; Tetraether index of 86 carbon atoms, low-temperature region
    Type: Dataset
    Format: text/tab-separated-values, 150 data points
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