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  • 1
    Publication Date: 2022-05-26
    Description: Presented at FORCE2018 Conference, Montreal, Canada, October 10-12, 2018. FORCE: Future of Research Communications and e-Scholarship
    Description: At domain-specific data repositories, curation that strives for FAIR principles often entails transforming data submissions to improve understanding and reuse. The Biological and Chemical Oceanography Data Management Office (BCO-DMO, https://www.bco-dmo.org) has been adopting the data containerization specification of the Frictionless Data project (https://frictionlessdata.io) in an effort to improve its data curation process efficiency. In doing so, BCO-DMO has been using the Frictionless Data Package Pipelines library (https://github.com/frictionlessdata/datapackage-pipelines) to define the processing steps that transform original submissions to final data products. Because these pipelines are defined using a declarative language they can be serialized into formal provenance data structures using the Provenance Ontology (PROV-O, https://www.w3.org/TR/prov-o/). While there may still be some curation steps that cannot be easily automated, this method is a step towards reproducible transforms that bridge the original data submission to its published state in machine-actionable ways that benefit the research community through transparency in the data curation process.
    Description: NSF #1435578
    Keywords: Frictionless Data ; Data management ; Provenance ; Data repository ; Worfklow
    Repository Name: Woods Hole Open Access Server
    Type: Presentation
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  • 2
    Publication Date: 2022-10-21
    Description: Presented at AGU Fall Meeting 10 – 14 December 2018, Washington, D.C.
    Description: The Biological and Chemical Oceanography Data Management Office (BCO-DMO) is a publicly accessible earth science data repository created to curate, publicly serve (publish), and archive digital data and information from biological, chemical and biogeochemical research conducted in coastal, marine, great lakes and laboratory environments. The BCO-DMO repository works closely with investigators funded through the NSF OCE Division’s Biological and Chemical Sections and Antarctic Organisms & Ecosystems. The office provides services that span the full data life cycle, from data management planning support and DOI creation, to archiving with appropriate national facilities. Recently, more and more of the projects submitted to BCO-DMO represent modeling efforts which further increase our knowledge of the chemical and biological properties within the ocean ecosystem. But, as a repository traditionally focused on observational data as a primary research output, what roles should domain-specific data repositories play in this field? Recognizing code as a first class research product, how should repositories support the discovery, access and reuse of code and software used in hypothesis driven research? We feel the time is at hand for the community to begin a concerted and holistic approach to the curation of code and software. Such strategy development should begin with asking what is the appropriate output to curate? What is the minimum metadata required for re-use? How should code be stored and accessed? Should repositories support or facilitate peer reviewing code? The answers to these questions will better inform domain-specific repositories on how to better manage code as a first class research asset in order to support the scientific community. This presentation will explore these topics, inviting discussion from the audience to advance a collective strategy.
    Description: NSF #1435578
    Keywords: Data management ; Provenance ; Data repository ; Worfklow ; Modeling Conference Name: AGU 2018 Conference Location: Washington, D.C
    Repository Name: Woods Hole Open Access Server
    Type: Presentation
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  • 3
    Publication Date: 2022-10-21
    Description: BCO-DMO, a repository funded by the National Science Foundation (NSF), supports the oceanographic research community’s data needs throughout the entire data life cycle. This guide describes the services available from BCO-DMO from proposal to preservation and highlights phases where researchers engage significantly with the office.
    Description: Curating and providing open access to research data is a collaborative process. This process may be thought of as a life cycle with data passing through various phases. Each phase has its own associated actors, roles, and critical activities. Good data management practices are necessary for all phases, from proposal to preservation.
    Description: NSF #1435578
    Keywords: Data management ; Provenance ; Data repository ; Worfklow
    Repository Name: Woods Hole Open Access Server
    Type: Other
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