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  • 1
    Publication Date: 2019
    Description: 〈span〉The Turkana Depression of northern Kenya and southern Ethiopia contains voluminous plume-related basalts that mark the onset of the Paleogene–recent East African Rift System (EARS) at ca. 45 Ma. Thus, the Turkana Depression is crucial to understanding the inception of intracontinental rifting. However, the precise chronology of early rift-basin formation in Turkana is poorly constrained. We present apatite fission-track and (U-Th-Sm)/He thermochronology data from basement rocks from the margins of the north-south–trending Lokichar Basin that constrain the onset of rift-related cooling. Thermal history modeling of these data documents pronounced Eocene to Miocene denudational cooling of the basin-bounding Lokichar fault footwall. These results, along with ~7 km of Paleogene to middle Miocene syn-rift strata preserved in the Lokichar fault hanging wall, suggest that formation of the Lokichar Basin began as early as ca. 45–40 Ma. Preexisting lithospheric heterogeneities inherited from earlier Mesozoic rifting and Eocene plume magmatism likely facilitated the broadly concurrent nucleation of strain in the Turkana Depression, up to ~15 m.y. earlier than EARS initiation elsewhere. Late Paleogene extension in the Lokichar Basin and other parts of Turkana significantly predate the Miocene creation of pronounced plume-related topography in East Africa, suggesting that other mechanism(s), such as far-field stresses or mantle basal drag, likely played a critical role during EARS inception.〈/span〉
    Print ISSN: 0091-7613
    Electronic ISSN: 1943-2682
    Topics: Geosciences
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  • 2
    Publication Date: 2019
    Description: 〈span〉〈div〉Abstract〈/div〉We present results from integrated field, microstructural, and textural analysis of the Burlington mylonite zone (BMZ) in eastern Massachusetts (northeastern USA) to establish a unified microkinematic framework for vorticity analysis in heterogeneous shear zones. Specifically, we develop a methodology for the structural analysis of polyphase lithologies that defines the vorticity-normal surface based on lattice-scale rotation axes calculated from electron backscatter diffraction data using orientation statistics. In doing so, we objectively identify a suitable reference frame for rigid grain methods of vorticity analysis that can be used in concert with field and microstructural methods of strain analysis and textural studies to constrain field- to plate-scale kinematics and deformation geometries without assumptions that may bias tectonic interpretations, such as relationships between kinematic axes and fabric-forming elements or the nature of the deforming zone (e.g., monoclinic versus triclinic shear zones).Rocks within the BMZ comprise a heterogeneous mix of quartzofeldspathic ± hornblende-bearing mylonitic gneisses and quartzites. Vorticity axes inferred from lattice rotations lie within the plane of mylonitic foliation perpendicular to lineation—a pattern consistent with monoclinic deformation geometries involving simple shear and/or wrench-dominated transpression. The mean kinematic vorticity number (〈span〉W〈/span〉〈sub〉m〈/sub〉) is calculated using rigid grain net analysis and ranges from 0.25 to 0.55, indicating dominant general shear. Using the calculated vorticity values and the dominant geographic fabric orientation, we constrain the angle of paleotectonic convergence between the Nashoba and Avalon terranes to ∼56°–75° with the convergence vector trending ∼142°–160° and plunging ∼3°–10°. Application of the quartz recrystallized grain size piezometer suggests differential stresses in the BMZ mylonites ranging from ∼44 to 92 MPa; patterns of quartz crystallographic preferred orientation are consistent with deformation at greenschist- to amphibolite-facies conditions. We conclude that crustal strain localization in the BMZ involved a combination of pure and simple shear in a sinistral reverse transpressional shear zone that was active at or near the brittle-ductile transition under relatively high stress conditions. Moreover, we demonstrate the utility of combined crystallographic and rigid grain methods of vorticity analysis for deducing deformation geometries, kinematics, and tectonic histories in polyphase shear zones.〈/span〉
    Electronic ISSN: 1553-040X
    Topics: Geosciences
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  • 3
    Publication Date: 2015-06-03
    Description: Background: Similarity-based retrieval of Electronic Health Records (EHRs) from large clinical information systems provides physicians the evidence support in making diagnoses or referring examinations for the suspected cases. Clinical Terms in EHRs represent high-level conceptual information and the similarity measure established based on these terms reflects the chance of inter-patient disease co-occurrence. The assumption that clinical terms are equally relevant to a disease is unrealistic, reducing the prediction accuracy. Here we propose a term weighting approach supported by PubMed search engine to address this issue. Methods: We collected and studied 112 abdominal computed tomography imaging examination reports from four hospitals in Hong Kong. Clinical terms, which are the image findings related to hepatocellular carcinoma (HCC), were extracted from the reports. Through two systematic PubMed search methods, the generic and specific term weightings were established by estimating the conditional probabilities of clinical terms given HCC. Each report was characterized by an ontological feature vector and there were totally 6216 vector pairs. We optimized the modified direction cosine (mDC) with respect to a regularization constant embedded into the feature vector. Equal, generic and specific term weighting approaches were applied to measure the similarity of each pair and their performances for predicting inter-patient co-occurrence of HCC diagnoses were compared by using Receiver Operating Characteristics (ROC) analysis. Results: The Areas under the curves (AUROCs) of similarity scores based on equal, generic and specific term weighting approaches were 0.735, 0.728 and 0.743 respectively (p 
    Electronic ISSN: 1472-6947
    Topics: Computer Science , Medicine
    Published by BioMed Central
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  • 4
    Publication Date: 2019
    Description: 〈span〉We present results from integrated field, microstructural, and textural analysis of the Burlington mylonite zone (BMZ) in eastern Massachusetts (northeastern USA) to establish a unified microkinematic framework for vorticity analysis in heterogeneous shear zones. Specifically, we develop a methodology for the structural analysis of polyphase lithologies that defines the vorticity-normal surface based on lattice-scale rotation axes calculated from electron backscatter diffraction data using orientation statistics. In doing so, we objectively identify a suitable reference frame for rigid grain methods of vorticity analysis that can be used in concert with field and microstructural methods of strain analysis and textural studies to constrain field- to plate-scale kinematics and deformation geometries without assumptions that may bias tectonic interpretations, such as relationships between kinematic axes and fabric-forming elements or the nature of the deforming zone (e.g., monoclinic versus triclinic shear zones).Rocks within the BMZ comprise a heterogeneous mix of quartzo­feld­spathic ± hornblende-bearing mylonitic gneisses and quartzites. Vorticity axes inferred from lattice rotations lie within the plane of mylonitic foliation perpendicular to lineation—a pattern consistent with monoclinic deformation geometries involving simple shear and/or wrench-dominated transpression. The mean kinematic vorticity number (〈span〉W〈/span〉〈sub〉m〈/sub〉) is calculated using rigid grain net analysis and ranges from 0.25 to 0.55, indicating dominant general shear. Using the calculated vorticity values and the dominant geographic fabric orientation, we constrain the angle of paleotectonic convergence between the Nashoba and Avalon terranes to ~56°–75° with the convergence vector trending ~142°–160° and plunging ~3°–10°. Application of the quartz recrystallized grain size piezometer suggests differential stresses in the BMZ mylonites ranging from ~44 to 92 MPa; patterns of quartz crystallographic preferred orientation are consistent with deformation at greenschist- to amphibolite-facies conditions. We conclude that crustal strain localization in the BMZ involved a combination of pure and simple shear in a sinistral reverse transpressional shear zone that was active at or near the brittle-ductile transition under relatively high stress conditions. Moreover, we demonstrate the utility of combined crystallographic and rigid grain methods of vorticity analy­sis for deducing deformation geometries, kinematics, and tectonic histories in polyphase shear zones.〈/span〉
    Electronic ISSN: 1553-040X
    Topics: Geosciences
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  • 5
    Publication Date: 2019
    Description: 〈span〉〈div〉Abstract〈/div〉The Turkana Depression of northern Kenya and southern Ethiopia contains voluminous plume-related basalts that mark the onset of the Paleogene–recent East African Rift System (EARS) at ca. 45 Ma. Thus, the Turkana Depression is crucial to understanding the inception of intracontinental rifting. However, the precise chronology of early rift-basin formation in Turkana is poorly constrained. We present apatite fission-track and (U-Th-Sm)/He thermochronology data from basement rocks from the margins of the north-south–trending Lokichar Basin that constrain the onset of rift-related cooling. Thermal history modeling of these data documents pronounced Eocene to Miocene denudational cooling of the basin-bounding Lokichar fault footwall. These results, along with ∼7 km of Paleogene to middle Miocene syn-rift strata preserved in the Lokichar fault hanging wall, suggest that formation of the Lokichar Basin began as early as ca. 45–40 Ma. Preexisting lithospheric heterogeneities inherited from earlier Mesozoic rifting and Eocene plume magmatism likely facilitated the broadly concurrent nucleation of strain in the Turkana Depression, up to ∼15 m.y. earlier than EARS initiation elsewhere. Late Paleogene extension in the Lokichar Basin and other parts of Turkana significantly predate the Miocene creation of pronounced plume-related topography in East Africa, suggesting that other mechanism(s), such as far-field stresses or mantle basal drag, likely played a critical role during EARS inception.〈/span〉
    Print ISSN: 0091-7613
    Electronic ISSN: 1943-2682
    Topics: Geosciences
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  • 6
    Publication Date: 2019
    Description: 〈span〉The qualitative resemblance between terrestrial and submarine branched valley networks has led to speculation that common underlying processes control their formation. However, quantitative comparisons have been impeded by methodological limitations and coarse resolution in marine systems. We analyze channel concavity and steepness indices of 23 terrestrial and 29 submarine catchments to determine whether their profile morphologies are distinct. Statistical comparisons of these quantities demonstrate that concavity indices in submarine systems are, in general, lower than in subaerial systems, and that submarine tributaries are steeper than their associated mainstem. These differences may reflect distinct drainage formation mechanisms and dynamics of submarine sediment gravity flows as compared to overland flow processes.〈/span〉
    Print ISSN: 0091-7613
    Electronic ISSN: 1943-2682
    Topics: Geosciences
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