ALBERT

Description: Low-level flights over tundra wetlands in Alaska and Canada have been conducted during the Airborne Measurements of Methane Emissions (AirMeth) campaigns to measure turbulent methane fluxes in the atmosphere. In this paper we describe the instrumentation and new calibration procedures for the essential pressure parameters required for turbulence sensing by aircraft that exploit suitable regular measurement flight legs without the need for dedicated calibration patterns. We estimate the accuracy of the mean wind and the turbulence measurements. We show that airborne measurements of turbulent fluxes of methane and carbon dioxide using cavity ring-down spectroscopy trace gas analysers together with established turbulence equipment achieve a relative accuracy similar to that of measurements of sensible heat flux if applied during low-level flights over natural area sources. The inertial subrange of the trace gas fluctuations cannot be resolved due to insufficient high-frequency precision of the analyser, but, since this scatter is uncorrelated with the vertical wind velocity, the covariance and thus the flux are reproduced correctly. In the covariance spectra the -7/3 drop-off in the inertial subrange can be reproduced if sufficient data are available for averaging. For convective conditions and flight legs of several tens of kilometres we estimate the flux detection limit to be about 4 mg m−2 d−1 for w′CH4′‾, 1.4 g m−2 d−1 for w′CO2′‾ and 4.2 W m−2 for the sensible heat flux.

Description: The objective of this study was to upscale airborne flux measurements of sensible heat and latent heat and to develop high-resolution flux maps. In order to support the evaluation of coupled atmospheric–land-surface models we investigated spatial patterns of energy fluxes in relation to land-surface properties. We used airborne eddy-covariance measurements acquired by the Polar 5 research aircraft in June–July 2012 to analyze surface fluxes. Footprint-weighted surface properties were then related to 21 529 sensible heat flux observations and 25 608 latent heat flux observations using both remote sensing and modeled data. A boosted regression tree technique was used to estimate environmental response functions between spatially and temporally resolved flux observations and corresponding biophysical and meteorological drivers. In order to improve the spatial coverage and spatial representativeness of energy fluxes we used relationships extracted across heterogeneous Arctic landscapes to infer high-resolution surface energy flux maps, thus directly upscaling the observational data. These maps of projected sensible heat and latent heat fluxes were used to assess energy partitioning in northern ecosystems and to determine the dominant energy exchange processes in permafrost areas. This allowed us to estimate energy fluxes for specific types of land cover, taking into account meteorological conditions. Airborne and modeled fluxes were then compared with measurements from an eddy-covariance tower near Atqasuk. Our results are an important contribution for the advanced, scale-dependent quantification of surface energy fluxes and they provide new insights into the processes affecting these fluxes for the main vegetation types in high-latitude permafrost areas.

Description: Large differences in instrumentation, site setup, data format, and operating system stymie the adoption of a universal computational environment for processing and analyzing eddy-covariance (EC) data. This results in limited software applicability and extensibility in addition to often substantial inconsistencies in flux estimates. Addressing these concerns, this paper presents the systematic development of portable, reproducible, and extensible EC software achieved by adopting a development and systems operation (DevOps) approach. This software development model is used for the creation of the eddy4R family of EC code packages in the open-source R language for statistical computing. These packages are community developed, iterated via the Git distributed version control system, and wrapped into a portable and reproducible Docker filesystem that is independent of the underlying host operating system. The HDF5 hierarchical data format then provides a streamlined mechanism for highly compressed and fully self-documented data ingest and output. The usefulness of the DevOps approach was evaluated for three test applications. First, the resultant EC processing software was used to analyze standard flux tower data from the first EC instruments installed at a National Ecological Observatory (NEON) field site. Second, through an aircraft test application, we demonstrate the modular extensibility of eddy4R to analyze EC data from other platforms. Third, an intercomparison with commercial-grade software showed excellent agreement (R2  =  1.0 for CO2 flux). In conjunction with this study, a Docker image containing the first two eddy4R packages and an executable example workflow, as well as first NEON EC data products are released publicly. We conclude by describing the work remaining to arrive at the automated generation of science-grade EC fluxes and benefits to the science community at large. This software development model is applicable beyond EC and more generally builds the capacity to deploy complex algorithms developed by scientists in an efficient and scalable manner. In addition, modularity permits meeting project milestones while retaining extensibility with time.

Description: Extreme hydrometeorological conditions typically impact ecophysiological processes of terrestrial vegetation. Satellite based observations of the terrestrial biosphere provide an important reference for detecting and describing the spatiotemporal development of such events. However, in-depth investigations of ecological processes during extreme events require additional in-situ observations. The question is if the density of existing ecological in-situ networks is sufficient for analyzing the impact of extreme events, or what are expected event detection rates of ecological in-situ networks of a given size. To assess these issues, we build a baseline of extreme reductions in the Fraction of Absorbed Photosynthetically Active Radiation (FAPAR), identified by a new event detection method tailored to identify extremes of regional relevance. We then investigate the event detection success rates of hypothetical networks of varying sizes. Our results show that large extremes can be reliably detected with relatively small network, but also reveal a linear decay of detection probabilities towards smaller extreme events in log-log space. For instance, networks with ≈ 100 randomly placed sites in Europe yield a ≥ 90 % chance of detecting the largest 8 (typically very large) extreme events; but only a ≥ 50 % chance of capturing the largest 39 events. These finding are consistent with probability-theoretic considerations, but the slopes of the decay rates deviate due to temporal autocorrelation issues and the exact implementation of the extreme event detection algorithm. Using the examples of AmeriFlux and NEON, we then investigate to what degree ecological in-situ networks can capture extreme events of a given size. Consistent with our theoretic considerations, we find that today's systematic network designs (i.e. NEON) reliably detects the largest extremes. But the extreme event detection rates are not higher than they would be achieved by randomly designed networks. Spatiotemporal expansions of ecological in-situ monitoring networks should carefully consider the size distribution characteristics of extreme events if the aim is also to monitor their impacts in the terrestrial biosphere.

Description: Extreme hydrometeorological conditions typically impact ecophysiological processes on land. Satellite-based observations of the terrestrial biosphere provide an important reference for detecting and describing the spatiotemporal development of such events. However, in-depth investigations of ecological processes during extreme events require additional in situ observations. The question is whether the density of existing ecological in situ networks is sufficient for analysing the impact of extreme events, and what are expected event detection rates of ecological in situ networks of a given size. To assess these issues, we build a baseline of extreme reductions in the fraction of absorbed photosynthetically active radiation (FAPAR), identified by a new event detection method tailored to identify extremes of regional relevance. We then investigate the event detection success rates of hypothetical networks of varying sizes. Our results show that large extremes can be reliably detected with relatively small networks, but also reveal a linear decay of detection probabilities towards smaller extreme events in log–log space. For instance, networks with  ≈  100 randomly placed sites in Europe yield a  ≥  90 % chance of detecting the eight largest (typically very large) extreme events; but only a  ≥  50 % chance of capturing the 39 largest events. These findings are consistent with probability-theoretic considerations, but the slopes of the decay rates deviate due to temporal autocorrelation and the exact implementation of the extreme event detection algorithm. Using the examples of AmeriFlux and NEON, we then investigate to what degree ecological in situ networks can capture extreme events of a given size. Consistent with our theoretical considerations, we find that today's systematically designed networks (i.e. NEON) reliably detect the largest extremes, but that the extreme event detection rates are not higher than would be achieved by randomly designed networks. Spatio-temporal expansions of ecological in situ monitoring networks should carefully consider the size distribution characteristics of extreme events if the aim is also to monitor the impacts of such events in the terrestrial biosphere.

Description: This study presents the systematic development of an open-source, flexible and modular eddy-covariance (EC) data processing framework. This is achieved through adopting a Development and Systems Operation (DevOps) philosophy, building on the eddy4R family of EC code packages in the R Language for Statistical Computing as foundation. These packages are community-developed via the GitHub distributed version control system and wrapped into a portable and reproducible Docker filesystem that is independent of the underlying host operating system. The HDF5 hierarchical data format then provides a streamlined mechanism for highly compressed and fully self-documented data ingest and output. This framework is applicable beyond EC, and more generally builds the capacity to deploy complex algorithms developed by scientists in an efficient and scalable manner. In addition, modularity permits meeting project milestones while retaining extensibility with time. The efficiency and consistency of this framework is demonstrated in the form of three application examples. These include tower EC data from first instruments installed at a National Ecological Observatory (NEON) field site, aircraft flux measurements in combination with remote sensing data, as well as a software intercomparison. In conjunction with this study, the first two eddy4R packages and simple NEON EC data products are released publicly. While this proof-of-concept represents a significant advance, substantial work remains to arrive at the automated framework needed for the streaming generation of science-grade EC fluxes.

Description: Low level flights over tundra wetlands in Alaska and Canada have been conducted during the AirMeth campaigns to measure turbulent methane fluxes into the atmosphere. In this paper we describe the instrumentation and new calibration procedures for the essential pressure parameters required for turbulence sensing by an aircraft that exploit suitable regular measurement flight legs without the need for dedicated calibration patterns. We estimate the accuracy of the mean wind and the turbulence measurements. We show that airborne measurements of turbulent fluxes of methane and carbon dioxide using cavity ring down spectroscopy trace gas analysers together with established turbulence equipment achieves a relative accuracy similar to that of measurements of sensible heat flux if applied during low level flights over natural area sources. The inertial subrange of the trace gas fluctuations cannot be resolved due to insufficient high frequency precision of the analyser but since this scatter is uncorrelated with the vertical wind velocity, the covariance and thus the flux is reproduced correctly. In the covariance spectra the −7/3 drop-off in the inertial subrange can be reproduced if sufficient data are available for averaging. For convective conditions and flight legs of several tens of kilometers we estimate the flux detection limit to about 4 mg/m2/d for w'CH4', 1.4 g/m2/d for w'CO2', and 4.2 W/m2/s for the sensible heat flux.

Description: The objective of this study was to upscale airborne flux measurements of sensible heat and latent heat and to develop high resolution flux maps. In order to support the evaluation of coupled atmospheric/land–surface models we investigated spatial patterns of energy fluxes in relation to land–surface properties. We used airborne eddy-covariance measurements acquired by the POLAR 5 research aircraft in June–July 2012 to analyze surface fluxes. Footprint-weighted surface properties were then related to 21 529 sensible heat flux observations and 25 608 latent heat flux observations using both remote sensing and modelled data. A boosted regression tree technique was used to estimate environmental response functions between spatially and temporally resolved flux observations and corresponding biophysical and meteorological drivers. In order to improve the spatial coverage and spatial representativeness of energy fluxes we used relationships extracted across heterogeneous Arctic landscapes to infer high-resolution surface energy flux maps, thus directly upscaling the observational data. These maps of projected sensible heat and latent heat fluxes were used to assess energy partitioning in northern ecosystems and to determine the dominant energy exchange processes in permafrost areas. This allowed us to estimate energy fluxes for specific types of land cover, taking into account meteorological conditions. Airborne and modelled fluxes were then compared with measurements from an eddy-covariance tower near Atqasuk. Our results are an important contribution for the advanced, scale-dependent quantification of surface energy fluxes and provide new insights into the processes affecting these fluxes for the main vegetation types in high-latitude permafrost areas.

Description: Several initiatives are currently emerging to observe the exchange of energy and matter between the earth's surface and atmosphere standardized over larger space and time domains. For example, the National Ecological Observatory Network (NEON) and the Integrated Carbon Observing System (ICOS) are set to provide the ability of unbiased ecological inference across ecoclimatic zones and decades by deploying highly scalable and robust instruments and data processing. In the construction of these observatories, enclosed infrared gas analyzers are widely employed for eddy covariance applications. While these sensors represent a substantial improvement compared to their open- and closed-path predecessors, remaining high-frequency attenuation varies with site properties and gas sampling systems, and requires correction. Here, we show that components of the gas sampling system can substantially contribute to such high-frequency attenuation, but their effects can be significantly reduced by careful system design. From laboratory tests we determine the frequency at which signal attenuation reaches 50 % for individual parts of the gas sampling system. For different models of rain caps and particulate filters, this frequency falls into ranges of 2.5–16.5 Hz for CO2, 2.4–14.3 Hz for H2O, and 8.3–21.8 Hz for CO2, 1.4–19.9 Hz for H2O, respectively. A short and thin stainless steel intake tube was found to not limit frequency response, with 50 % attenuation occurring at frequencies well above 10 Hz for both H2O and CO2. From field tests we found that heating the intake tube and particulate filter continuously with 4 W was effective, and reduced the occurrence of problematic relative humidity levels (RH  〉 60 %) by 50 % in the infrared gas analyzer cell. No further improvement of H2O frequency response was found for heating in excess of 4 W. These laboratory and field tests were reconciled using resistor–capacitor theory, and NEON's final gas sampling system was developed on this basis. The design consists of the stainless steel intake tube, a pleated mesh particulate filter and a low-volume rain cap in combination with 4 W of heating and insulation. In comparison to the original design, this reduced the high-frequency attenuation for H2O by  ≈ 3∕4, and the remaining cospectral correction did not exceed 3 %, even at high relative humidity (95 %). The standardized design can be used across a wide range of ecoclimates and site layouts, and maximizes practicability due to minimal flow resistance and maintenance needs. Furthermore, due to minimal high-frequency spectral loss, it supports the routine application of adaptive correction procedures, and enables largely automated data processing across sites.