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  • American Geophysical Union  (99)
  • PANGAEA  (34)
  • American Meteorological Society (AMS)
  • International Union of Crystallography (IUCr)
  • 2020-2024  (27)
  • 2000-2004  (128)
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  • 1
    Electronic Resource
    Electronic Resource
    Subunit dissociation and reassociation leads to preferential crystallization of haemoglobin Bart's (γ4) from solutions of human embryonic haemoglobin Portland (ζ2γ2) at low pH (2001)
    Copenhagen : International Union of Crystallography (IUCr)
    Acta crystallographica 57 (2001), S. 921-924 
    Details
    ISSN: 1399-0047
    Source: Crystallography Journals Online : IUCR Backfile Archive 1948-2001
    Topics: Chemistry and Pharmacology , Geosciences , Physics
    Notes: A variety of human haemoglobins (Hbs) are produced at different stages of human development, including three embryonic Hbs, foetal Hb and adult Hb. All are heterotetramers. During crystallization experiments on human embryonic Hb Portland (ζ2γ2), it was discovered by crystallographic and biochemical analysis that the homotetramer Hb Bart's (γ4) preferentially crystallizes from ζ2γ2 solutions below pH 5. This results from dissociation of Hb Portland into γ2 dimers and ζ monomers and has interesting implications for subunit interactions and tetramer stability in Hbs. It also makes possible a full crystallographic analysis of Hb Bart's, which is of considerable medical significance because of its presence in the red blood cells of millions of people worldwide who suffer from α-thalassaemia.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1107/S0907444901004516
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    Paper (German National Licenses)
    Fulltext
  • 2
    Electronic Resource
    Electronic Resource
    Crystallization and preliminary X-ray analysis of native and recombinant human bile-salt dependent lipase: strategies for improvement of diffraction quality (2000)
    Copenhagen : International Union of Crystallography (IUCr)
    Acta crystallographica 56 (2000), S. 478-480 
    Details
    ISSN: 1399-0047
    Source: Crystallography Journals Online : IUCR Backfile Archive 1948-2001
    Topics: Chemistry and Pharmacology , Geosciences , Physics
    Notes: Human bile-salt dependent lipase (BSDL), secreted into both the digestive tract and human milk, is integral to the effective absorption of dietary lipids. In attempts to obtain crystals suitable for high-resolution X-ray crystallographic studies, various forms of the enzyme have been crystallized, including native and desialidated human milk BSDL and both intact recombinant BSDL and a truncated form lacking the heavily glycosylated C-terminal repeat region. Trigonal crystals of native BSDL, with unit-cell parameters a = b = 90.0, c = 156.1 Å, were obtained using 15–20%(w/v) PEG 8000 as precipitant. These crystals diffract to 3.5 Å along the unique axis, but to only 5–7 Å in orthogonal directions. Crystals of recombinant truncated BSDL grown from 15–20%(w/v) PEG 6000 are orthorhombic, space group P212121, with unit-cell parameters a = 59.2, b = 90.0, c = 107.7 Å, and diffract to 2.6 Å resolution. These are suitable for structural analysis by X-ray crystallography.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1107/S0907444900000986
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    Paper (German National Licenses)
    Fulltext
  • 3
    Electronic Resource
    Electronic Resource
    Expression, crystallization and preliminary characterization of methylmalonyl coenzyme A epimerase from Propionibacterium shermanii (2001)
    Copenhagen : International Union of Crystallography (IUCr)
    Acta crystallographica 57 (2001), S. 706-708 
    Details
    ISSN: 1399-0047
    Source: Crystallography Journals Online : IUCR Backfile Archive 1948-2001
    Topics: Chemistry and Pharmacology , Geosciences , Physics
    Notes: Methylmalonyl-CoA epimerase (MMCE) is an enzyme that interconverts the R and S epimers of methylmalonyl-CoA in the pathway that links propionyl-CoA with succinyl-CoA. This is used for both biosynthetic and degradative processes, including the breakdown of odd-numbered fatty acids and some amino acids. The enzyme has been expressed in Escherichia coli both as the native enzyme and as its selenomethionine (SeMet) derivative. Crystals of both forms have been obtained by vapour diffusion using monomethylether PEG 2000 as precipitant. The native MMCE crystals are orthorhombic, with unit-cell parameters a = 56.0, b = 114.0, c = 156.0 Å, and the SeMet-MMCE crystals are monoclinic, with unit-cell parameters a = 43.6, b = 78.6, c = 89.4 Å, β = 92.0°; both diffract to better than 2.8 Å resolution.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1107/S0907444901002050
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    Paper (German National Licenses)
    Fulltext
  • 4
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    Measured Serengeti soil chemical properties including salinity and pH (2022)
    PANGAEA
    Details
    Publication Date: 2023-03-14
    Keywords: Banagi; Conductivity; DEPTH, soil; Elevation of event; Event label; GDGTs; Kemarishe; Kirawira; Latitude of event; Longitude of event; Makoma; Malambo Road; MULT; Multiple investigations; Musabi; Naabi Hill; Ndabakal; Nyaruswiga; Optional event label; pH; Salinity; Sample code/label; Serengeti; Serengeti_soil_Banagi; Serengeti_soil_Kemarishe; Serengeti_soil_Kirawira; Serengeti_soil_Makoma; Serengeti_soil_Malambo_Road; Serengeti_soil_Musabi; Serengeti_soil_Naabi_Hill; Serengeti_soil_Ndabaka; Serengeti_soil_Nyaruswiga; Serengeti_soil_Shifting_Sands; Serengeti_soil_Simba_Kopjes; Shifting Sands; Simba Kopjes; Soil; Total dissolved solids
    Type: Dataset
    Format: text/tab-separated-values, 492 data points
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    DATA PANGAEA
  • 5
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    Collection data of the new species Tedania (Tedaniopsis) rappi (Demospongiae, Poecilosclerida, Tedaniidae) (2020)
    PANGAEA
    Details
    Publication Date: 2023-02-24
    Description: We report the first records of the new species Tedania (Tedaniopsis) rappi (Demospongiae, Poecilosclerida, Tedaniidae) from the Orphan Seamount, between 2999.88 and 3449.629 m in depth.
    Keywords: Area/locality; Campaign; Code; Collection; Conductivity; DATE/TIME; Deep-sea Sponge Grounds Ecosystems of the North Atlantic; Depth, bottom/max; DEPTH, water; Device type; Discovery (2013); DY081; DY081_5; DY081_ROV327; Event label; Habitat; HUD2010-029; HUD2010-029_1340-3; Hudson; ICY-LAB; LATITUDE; LONGITUDE; Palancre; PAoM_1905_2183; Reference/source; Remote operated platform for oceanography; Remote operated vehicle; ROPOS; ROV; Salinity; San_Juan_Archipelago; Species; SponGES; Station label; Tartar_Strait; Temperature, water; Treatment; Type; Vessel
    Type: Dataset
    Format: text/tab-separated-values, 53 data points
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  • 6
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    Abundances and indices for soil microbial biomarkers (brGDGTs and isoGDGTs) in eleven soil profiles along a Serengeti transect (2022)
    PANGAEA
    Details
    Publication Date: 2023-01-30
    Description: Soil profiles were collected along a transect across the Serengeti ecosystem, in Tanzania from 2-3S and 34-35.5E, 1153 to 1677 m above sea level and 0 to 1.6 m soil depth. The samples are modern soils and the temporal span of the soil depth profiles is unconstrained, likely centuries to millennia. The survey is intended to observe soil microbial lipid biomarkers that are commonly used as proxies for temperature and pH and to assess their robustness in alkaline carbonate-precipitating soil profiles, where soil carbonate proxies can also be applied. These modern calibrations can inform reconstructions of Eastern African paleoenvironments using the same proxies in geological archives. Lipid extractions and purifications were performed at USC in 2018-2019 and abundances of branched and isoprenoidal glycerol dialkyl glycerol tetraethers were obtained by high pressure liquid chromatography mass spectrometry, performed in 2020-2021 at the University of Arizona. Contextual data include total dissolved solids and pH measurements at the University of Houston in 2020-2021. For more information, please consult associated manuscript on the GDGTs within these soil profiles: Peaple et al., (2022) Identifying the drivers of GDGT distributions in alkaline soil profiles within the Serengeti ecosystem, Organic Geochemistry, in review. A publication on the bulk organics and compound specific carbon isotopic composition of plant waxes in the same soils: Zhang, et al. (2021) Carbon isotopic composition of plant waxes, bulk organics and carbonates from soils of the Serengeti grasslands, Geochimica et Cosmochimica Acta, 311, 316-331, doi:10.1016/j.gca.2021.07.005. That study includes stable hydrogen isotopic data on plant wax, available from doi:10.1594/PANGAEA.921002. A publication on multiple oxygen isotopes within carbonates in the same soil profiles can be found at: Beverly, E.J., Levin, N.E., Passey, B.H., Aron, P.G., Yarian, D.A., Page, M. and Pelletier, E.M. (2021) Triple oxygen and clumped isotopes in modern soil carbonate along an aridity gradient in the Serengeti, Tanzania. Earth and Planetary Science Letters, 567, 116952, doi:10.1016/j.epsl.2021.116952. That study includes stable carbon isotopic data on soil carbonates, available from doi:10.5281/zenodo.4919027.
    Keywords: GDGTs; pH; Salinity; Soil
    Type: Dataset
    Format: application/zip, 2 datasets
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  • 7
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    Concentrations and relative abundance of GDGT soil profiles along a Serengeti transect (2022)
    PANGAEA
    Details
    Publication Date: 2023-12-22
    Keywords: Archaeol; Archaeol and Caldarchaeol Ecometric index; Banagi; Branched and isoprenoid tetraether index; Branched glycerol dialkyl glycerol tetraether; Branched glycerol dialkyl glycerol tetraether, Ia; Branched glycerol dialkyl glycerol tetraether, Ia, fractional abundance; Branched glycerol dialkyl glycerol tetraether, Ib; Branched glycerol dialkyl glycerol tetraether, Ib, fractional abundance; Branched glycerol dialkyl glycerol tetraether, Ic; Branched glycerol dialkyl glycerol tetraether, Ic, fractional abundance; Branched glycerol dialkyl glycerol tetraether, IIa; Branched glycerol dialkyl glycerol tetraether, IIa, fractional abundance; Branched glycerol dialkyl glycerol tetraether, IIa'; Branched glycerol dialkyl glycerol tetraether, IIa', fractional abundance; Branched glycerol dialkyl glycerol tetraether, IIb; Branched glycerol dialkyl glycerol tetraether, IIb, fractional abundance; Branched glycerol dialkyl glycerol tetraether, IIb'; Branched glycerol dialkyl glycerol tetraether, IIb', fractional abundance; Branched glycerol dialkyl glycerol tetraether, IIc; Branched glycerol dialkyl glycerol tetraether, IIc, fractional abundance; Branched glycerol dialkyl glycerol tetraether, IIc'; Branched glycerol dialkyl glycerol tetraether, IIc', fractional abundance; Branched glycerol dialkyl glycerol tetraether, IIIa; Branched glycerol dialkyl glycerol tetraether, IIIa, fractional abundance; Branched glycerol dialkyl glycerol tetraether, IIIa'; Branched glycerol dialkyl glycerol tetraether, IIIa', fractional abundance; Branched glycerol dialkyl glycerol tetraether, IIIb; Branched glycerol dialkyl glycerol tetraether, IIIb, fractional abundance; Branched glycerol dialkyl glycerol tetraether, IIIb'; Branched glycerol dialkyl glycerol tetraether, IIIb', fractional abundance; Branched glycerol dialkyl glycerol tetraether, IIIc; Branched glycerol dialkyl glycerol tetraether, IIIc, fractional abundance; Branched glycerol dialkyl glycerol tetraether, IIIc'; Branched glycerol dialkyl glycerol tetraether, IIIc', fractional abundance; Carbon, organic, total; Cyclization ratio of branched tetraethers; DEPTH, soil; Depth comment; Elevation of event; Event label; Isomer ratio of 6-methyl branched glycerol dialkyl glycerol tetraethers; Isoprenoid acyclic glycerol dialkyl glycerol tetraether; Isoprenoid acyclic glycerol dialkyl glycerol tetraether, fractional abundance; Isoprenoidal glycerol dialkyl glycerol tetraethers; Isoprenoid dicyclic glycerol dialkyl glycerol tetraether; Isoprenoid dicyclic glycerol dialkyl glycerol tetraether, fractional abundance; Isoprenoid glycerol dialkyl glycerol tetraether, 5; Isoprenoid glycerol dialkyl glycerol tetraether, 5, fractional abundance; Isoprenoid glycerol dialkyl glycerol tetraether, 5'; Isoprenoid glycerol dialkyl glycerol tetraether, 5', fractional abundance; Isoprenoid glycerol dialkyl glycerol tetraether, per unit mass total organic carbon; Isoprenoid glycerol dialkyl glycerol tetraether/branched glycerol dialkyl glycerol tetraether ratio; Isoprenoid monocyclic glycerol dialkyl glycerol tetraether; Isoprenoid monocyclic glycerol dialkyl glycerol tetraether, fractional abundance; Isoprenoid tricyclic glycerol dialkyl glycerol tetraether; Isoprenoid tricyclic glycerol dialkyl glycerol tetraether, fractional abundance; Kemarishe; Kirawira; Latitude of event; Longitude of event; Makoma; Malambo Road; Methylation index of 5-methyl branched glycerol dialkyl glycerol tetraether; MULT; Multiple investigations; Musabi; Naabi Hill; Ndabakal; Nyaruswiga; Optional event label; Precipitation, annual mean; Sample code/label; Serengeti; Serengeti_soil_Banagi; Serengeti_soil_Kemarishe; Serengeti_soil_Kirawira; Serengeti_soil_Makoma; Serengeti_soil_Malambo_Road; Serengeti_soil_Musabi; Serengeti_soil_Naabi_Hill; Serengeti_soil_Ndabaka; Serengeti_soil_Nyaruswiga; Serengeti_soil_Shifting_Sands; Serengeti_soil_Simba_Kopjes; Shifting Sands; Simba Kopjes; Temperature, annual mean
    Type: Dataset
    Format: text/tab-separated-values, 1352 data points
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  • 8
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    Aerosol soluble chemical composition for OASIS cruise (SO234/2 & SO235), Indian Ocean, July-August 2014, determined by ion chromatography and inductively coupled plasma - mass spectrometry (2021)
    PANGAEA
    Details
    Publication Date: 2023-12-12
    Description: Size segregated aerosol samples were collected during the OASIS (“Organic very short lived substances and their Air Sea Exchange from the Indian Ocean to the Stratosphere”) cruises (FS Sonne, SO234-2 & SO235) during 8 - 20 July & 23 July – 7 August 2014 in the southern Indian Ocean (~30 E - 75 E, 30 S – 5 N). The samples were collected by Birgit Quack of GEOMAR, Kiel, Germany. The aerosol sampler was situated on the roof of the ship's wheelhouse and was connected to an automatic wind sector controller to prevent contamination of the samples from the ship's stack. Most samples were collected using a Sierra-type cascade impactor to separate the aerosol particles at an aerodynamic diameter cutoff of 1 µm. Collection time for these samples varied between 27.7 and 46.9 hours. For one sample, 6 impactor stages and a backup filter were used to give more detailed information aerosol size distribution. This sample was collected over 91.7 hours. Samples were extracted with ultrapure water and the major ions Na+, NH4+, Mg2+, K+, Ca2+, Cl-, NO3-, SO42-, oxalate, Br- and methanesulfonate were determined by ion chromatography (IC). Total soluble iodine (TSI) was determined by inductively coupled plasma - mass spectrometry (ICP-MS) and iodide (I-) and iodate (IO3-) were determined by IC-ICP-MS. The dataset contains the atmospheric concentrations of all measured soluble major ions (in nmol/m³) and iodine species (in pmol/ m³).
    Keywords: Aerosol size distribution; Air volume; Ammonium, soluble; Ammonium, soluble, standard deviation; Bromide, soluble; Bromide, soluble, standard deviation; Calcium, soluble; Calcium, soluble, standard deviation; Chloride, soluble; Chloride, soluble, standard deviation; Date/Time of event; Date/Time of event 2; Elemental species separation and detection (IC-ICP-MS); Event label; High volume aerosol collector (Graseby-Anderson type); Inductively coupled plasma - mass spectrometry (ICP-MS); Iodate, soluble; Iodate, soluble, standard deviation; Iodide, soluble; Iodide, soluble, standard deviation; Iodine, soluble; Iodine, soluble, standard deviation; iodine speciation; Ion chromatography; Latitude of event; Latitude of event 2; Longitude of event; Longitude of event 2; Magnesium, soluble; Magnesium, soluble, standard deviation; major ions; Methane sulfonic acid; Methane sulfonic acid, standard deviation; Nitrate, soluble; Nitrate, soluble, standard deviation; OASIS; Oxalate, soluble; Oxalate, soluble, standard deviation; Potassium, soluble; Potassium, soluble, standard deviation; Sample code/label; Size fraction; SO234/2; SO234/2_MI01; SO234/2_MI02; SO234/2_MI03; SO234/2_MI04; SO234/2_MI05; SO235; SO235_MI09; SO235_MI10; SO235_MI11; SO235_MI13; SO235_MI14; Sodium, soluble; Sodium, soluble, standard deviation; Sonne; Southern Indian Ocean; SPACES II; Sulfate, soluble; Sulfate, soluble, standard deviation
    Type: Dataset
    Format: text/tab-separated-values, 709 data points
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  • 9
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    Aerosol chemical composition (major ions and iodine speciation) during the TransBrom cruise in the western Pacific Ocean, October 2009 (2021)
    PANGAEA
    Details
    Publication Date: 2023-12-12
    Description: Size segregated aerosol samples were collected during the Very short lived bromine compounds in the ocean and their transport pathways into the stratosphere (TransBrom) cruise (FS Sonne, SO202) during 9 - 25 October 2009 in the western Pacific Ocean (~141 E - 146 E, 20 S – 43 N). The samples were collected by Christian Müller, Sebastian Wache and Arne Lanatowitz of GEOMAR, Kiel, Germany. The aerosol sampler was situated on the roof of the ship's wheelhouse. Samples were collected using a Sierra-type cascade impactor to separate the aerosol particles at an aerodynamic diameter cutoff of 1 µm. Collection time for the samples varied between 20.3 and 26.8 hours. Samples were extracted with ultrapure water and the major ions Na+, NH4+, Mg2+, K+, Ca2+, Cl-, NO3-, SO42-, oxalate, Br- and methanesulfonate were determined by ion chromatography (IC). Total soluble iodine (TSI) was determined by inductively coupled plasma - mass spectrometry (ICP-MS) and iodide (I-) and iodate (IO3-) were determined by IC-ICP-MS. The dataset contains the atmospheric concentrations of all measured soluble major ions (in nmol/m³) and iodine species (in pmol/m³).
    Keywords: Air volume; Ammonium, soluble; Ammonium, soluble, standard deviation; Bromide, soluble; Bromide, soluble, standard deviation; Calcium, soluble; Calcium, soluble, standard deviation; Chloride, soluble; Chloride, soluble, standard deviation; Date/Time of event; Date/Time of event 2; Elemental species separation and detection (IC-ICP-MS); Event label; high-volume aerosol collection; High volume aerosol collector (Graseby-Anderson type); Inductively coupled plasma - mass spectrometry (ICP-MS); Iodate, soluble; Iodate, soluble, standard deviation; Iodide, soluble; Iodide, soluble, standard deviation; Iodine, soluble; Iodine, soluble, standard deviation; Ion chromatography; Latitude of event; Latitude of event 2; Longitude of event; Longitude of event 2; Magnesium, soluble; Magnesium, soluble, standard deviation; Methane sulfonic acid; Methane sulfonic acid, standard deviation; Nitrate, soluble; Nitrate, soluble, standard deviation; Oxalate, soluble; Oxalate, soluble, standard deviation; Potassium, soluble; Potassium, soluble, standard deviation; Sample code/label; Size fraction; size-segregated aerosol particles; SO202/2; SO202/2_I01; SO202/2_I02; SO202/2_I03; SO202/2_I04; SO202/2_I05; SO202/2_I06; SO202/2_I07; SO202/2_I08; SO202/2_I09; SO202/2_I10; SO202/2_I11; SO202/2_I12; SO202/2_I13; Sodium, soluble; Sodium, soluble, standard deviation; Sonne; Sulfate, soluble; Sulfate, soluble, standard deviation; TransBrom; Western Pacific Ocean
    Type: Dataset
    Format: text/tab-separated-values, 776 data points
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  • 10
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    Aerosol chemical composition (major ions and iodine species) in samples collected during the M138 cruise in the eastern Pacific Ocean, June 2017 (2021)
    PANGAEA
    Details
    Publication Date: 2023-12-12
    Description: Size segregated aerosol samples were collected during the M138 cruise (FS Meteor) during 6 June - 1 July 2017 in the eastern Pacific Ocean (~86 W - 76 W, 16 S – 5 N). The samples were collected by Hermann Bange of GEOMAR, Kiel, Germany. The aerosol sampler was situated on the roof of the ship's wheelhouse and its operation was controlled by an automatic wind sector controller to prevent contamination from the ship's stack. Samples were collected using a Sierra-type cascade impactor to separate the aerosol particles at an aerodynamic diameter cutoff of 1 µm. Collection time for these samples varied between 14.3 and 65.2 hours. Samples were extracted with ultrapure water and the major ions Na+, NH4+, Mg2+, K+, Ca2+, Cl-, NO3-, SO42-, oxalate, Br- and methanesulfonate were determined by ion chromatography (IC). Total soluble iodine (TSI) was determined by inductively coupled plasma - mass spectrometry (ICP-MS) and iodide (I-) and iodate (IO3-) were determined by IC-ICP-MS. Analysis work was performed by Andrew Smith of University of East Anglia, Norwich, UK. The dataset contains the atmospheric concentrations of all measured soluble major ions (in nmol/m³)) and iodine species (in in pmol/m³). The data are reported in “Soluble iodine speciation in marine aerosols across the Indian and Pacific Ocean basins”, E. Droste et al., Frontiers in Marine Science, in preparation, (2021).
    Keywords: Air volume; Ammonium, soluble; Ammonium, soluble, standard deviation; Bromide, soluble; Calcium, soluble; Calcium, soluble, standard deviation; Chloride, soluble; Chloride, soluble, standard deviation; Date/Time of event; Date/Time of event 2; East Pacific Ocean; Elemental species separation and detection (IC-ICP-MS); Event label; high-volume aerosol collection; High volume aerosol collector (Graseby-Anderson type); Inductively coupled plasma - mass spectrometry (ICP-MS); Iodate, soluble; Iodate, soluble, standard deviation; Iodide, soluble; Iodide, soluble, standard deviation; Iodine, soluble; Iodine, soluble, standard deviation; Ion chromatography; Latitude of event; Latitude of event 2; Longitude of event; Longitude of event 2; M138; M138_MI04; M138_MI05; M138_MI06; M138_MI07; M138_MI08; M138_MI09; M138_MI10; M138_MI11; M138_MI12; M138_MI13; M138_MI14; M138_MI15; Magnesium, soluble; Magnesium, soluble, standard deviation; Meteor (1986); Methane sulfonic acid; Methane sulfonic acid, standard deviation; Nitrate, soluble; Nitrate, soluble, standard deviation; Oxalate, soluble; Oxalate, soluble, standard deviation; Potassium, soluble; Potassium, soluble, standard deviation; Sample code/label; SFB754; Size fraction; size-segregated aerosol particles; Sodium, soluble; Sodium, soluble, standard deviation; Sulfate, soluble; Sulfate, soluble, standard deviation
    Type: Dataset
    Format: text/tab-separated-values, 664 data points
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    DATA PANGAEA
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