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  • Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu  (120)
  • Woods Hole Oceanographic Institution  (15)
  • MDPI  (14)
  • 2020-2023  (149)
Collection
Publisher
Years
Year
  • 1
    Publication Date: 2022-05-27
    Description: The Surface Ocean – Lower Atmosphere Study (SOLAS) (http://www.solas-int.org/) is an international research initiative focused on understanding the key biogeochemical-physical interactions and feedbacks between the ocean and atmosphere that are critical elements of climate and global biogeochemical cycles. Following the release of the SOLAS Decadal Science Plan (2015-2025) (Brévière et al., 2016), the Ocean-Atmosphere Interaction Committee (OAIC) was formed as a subcommittee of the Ocean Carbon and Biogeochemistry (OCB) Scientific Steering Committee to coordinate US SOLAS efforts and activities, facilitate interactions among atmospheric and ocean scientists, and strengthen US contributions to international SOLAS. In October 2019, with support from OCB, the OAIC convened an open community workshop, Ocean-Atmosphere Interactions: Scoping directions for new research with the goal of fostering new collaborations and identifying knowledge gaps and high-priority science questions to formulate a US SOLAS Science Plan. Based on presentations and discussions at the workshop, the OAIC and workshop participants have developed this US SOLAS Science Plan. The first part of the workshop and this Science Plan were purposefully designed around the five themes of the SOLAS Decadal Science Plan (2015-2025) (Brévière et al., 2016) to provide a common set of research priorities and ensure a more cohesive US contribution to international SOLAS.
    Description: This report was developed with federal support of NSF (OCE-1558412) and NASA (NNX17AB17G).
    Repository Name: Woods Hole Open Access Server
    Type: Working Paper
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  • 2
    Publication Date: 2022-10-20
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Blevins, M. G., Allen, H. L., Colson, B. C., Cook, A.-M., Greenbaum, A. Z., Hemami, S. S., Hollmann, J., Kim, E., LaRocca, A. A., Markoski, K. A., Miraglia, P., Mott, V. L., Robberson, W. M., Santos, J. A., Sprachman, M. M., Swierk, P., Tate, S., Witinski, M. F., Kratchman, L. B., & Michel, A. P. M. Field-portable microplastic sensing in aqueous environments: a perspective on emerging techniques. Sensors, 21(10), (2021): 3532, https://doi.org/10.3390/s21103532.
    Description: Microplastics (MPs) have been found in aqueous environments ranging from rural ponds and lakes to the deep ocean. Despite the ubiquity of MPs, our ability to characterize MPs in the environment is limited by the lack of technologies for rapidly and accurately identifying and quantifying MPs. Although standards exist for MP sample collection and preparation, methods of MP analysis vary considerably and produce data with a broad range of data content and quality. The need for extensive analysis-specific sample preparation in current technology approaches has hindered the emergence of a single technique which can operate on aqueous samples in the field, rather than on dried laboratory preparations. In this perspective, we consider MP measurement technologies with a focus on both their eventual field-deployability and their respective data products (e.g., MP particle count, size, and/or polymer type). We present preliminary demonstrations of several prospective MP measurement techniques, with an eye towards developing a solution or solutions that can transition from the laboratory to the field. Specifically, experimental results are presented from multiple prototype systems that measure various physical properties of MPs: pyrolysis-differential mobility spectroscopy, short-wave infrared imaging, aqueous Nile Red labeling and counting, acoustophoresis, ultrasound, impedance spectroscopy, and dielectrophoresis.
    Description: We greatly thank our funding agencies: Gerstner Philanthropies (to A.P.M.M.), the Richard Saltonstall Charitable Foundation (to A.P.M.M.), and the Wallace Research Foundation (to A.P.M.M. and S.S.H.). Funding for M.G.B. was provided by a Draper Fellowship and to B.C.C. by an MIT Martin Fellowship. Draper thanks EPA region 9 for their partnership and support through a Cooperative Research and Development Agreement, an industry/government agreement regarding funding and personnel contributions of time and expertise.
    Keywords: Microplastics ; Plastic pollution ; Sensors ; Analytical chemistry ; Environment ; Water ; Ocean ; Marine pollution ; Polymers ; Freshwater ; Aqueous solutions
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 3
    Publication Date: 2022-05-26
    Description: Dataset: GP16 Soluble and Dissolved Fe and Fe Isotopes
    Description: Concentrations of soluble and dissolved iron (Fe) and iron isotope ratios from the U.S. GEOTRACES EPZT cruise (GP16, TN303) on R/V Thomas G. Thompson in the tropical Pacific during November & December 2013. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/818707
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1234827, NSF Division of Ocean Sciences (NSF OCE) OCE-1713677, NSF Division of Ocean Sciences (NSF OCE) OCE-1434493
    Repository Name: Woods Hole Open Access Server
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  • 4
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-05-26
    Description: Dataset: OlyGrowth_Expt_2018_Mortality
    Description: Olympia oyster mortality samples from cultures in 50 unique combinations of temperature, salinity, pCO2 at Shannon Point Marine Center in May 2018. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/776293
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1538626
    Repository Name: Woods Hole Open Access Server
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  • 5
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-05-26
    Description: Dataset: OlyGrowth_Expt_2018_Growth
    Description: Olympia oyster growth samples cultured in 50 unique combinations of temperature, salinity, pCO2 at Shannon Point Marine Center in May 2018. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/776281
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1538626
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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  • 6
    Publication Date: 2022-10-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Moebius, W., Huemmert, S., Ruhwedel, T., Kuzirian, A., & Gould, R. New species can broaden myelin research: suitability of little skate, Leucoraja erinacea. Life, 11(2), (2021): 136, https://doi.org/10.3390/life11020136.
    Description: Although myelinated nervous systems are shared among 60,000 jawed vertebrates, studies aimed at understanding myelination have focused more and more on mice and zebrafish. To obtain a broader understanding of the myelination process, we examined the little skate, Leucoraja erinacea. The reasons behind initiating studies at this time include: the desire to study a species belonging to an out group of other jawed vertebrates; using a species with embryos accessible throughout development; the availability of genome sequences; and the likelihood that mammalian antibodies recognize homologs in the chosen species. We report that the morphological features of myelination in a skate hatchling, a stage that supports complex behavioral repertoires needed for survival, are highly similar in terms of: appearances of myelinating oligodendrocytes (CNS) and Schwann cells (PNS); the way their levels of myelination conform to axon caliber; and their identity in terms of nodal and paranodal specializations. These features provide a core for further studies to determine: axon–myelinating cell communication; the structures of the proteins and lipids upon which myelinated fibers are formed; the pathways used to transport these molecules to sites of myelin assembly and maintenance; and the gene regulatory networks that control their expressions.
    Description: This research received no external funding.
    Keywords: Myelin evolution ; Little skate ; Oligodendrocytes ; Schwann cells ; Elasmobranch ; Spinal cord ; Optic nerve ; Electron microscopy
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 7
    Publication Date: 2022-10-26
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Kiang, N. Y., Swingley, W. D., Gautam, D., Broddrick, J. T., Repeta, D. J., Stolz, J. F., Blankenship, R. E., Wolf, B. M., Detweiler, A. M., Miller, K. A., Schladweiler, J. J., Lindeman, R., & Parenteau, M. N. Discovery of chlorophyll d: isolation and characterization of a far-red cyanobacterium from the original site of manning and strain (1943) at Moss Beach, California. Microorganisms, 10(4), (2022): 819, https://doi.org/10.3390/microorganisms10040819.
    Description: We have isolated a chlorophyll-d-containing cyanobacterium from the intertidal field site at Moss Beach, on the coast of Central California, USA, where Manning and Strain (1943) originally discovered this far-red chlorophyll. Here, we present the cyanobacterium’s environmental description, culturing procedure, pigment composition, ultrastructure, and full genome sequence. Among cultures of far-red cyanobacteria obtained from red algae from the same site, this strain was an epiphyte on a brown macroalgae. Its Qyin vivo absorbance peak is centered at 704–705 nm, the shortest wavelength observed thus far among the various known Acaryochloris strains. Its Chl a/Chl d ratio was 0.01, with Chl d accounting for 99% of the total Chl d and Chl a mass. TEM imagery indicates the absence of phycobilisomes, corroborated by both pigment spectra and genome analysis. The Moss Beach strain codes for only a single set of genes for producing allophycocyanin. Genomic sequencing yielded a 7.25 Mbp circular chromosome and 10 circular plasmids ranging from 16 kbp to 394 kbp. We have determined that this strain shares high similarity with strain S15, an epiphyte of red algae, while its distinct gene complement and ecological niche suggest that this strain could be the closest known relative to the original Chl d source of Manning and Strain (1943). The Moss Beach strain is designated Acaryochloris sp. (marina) strain Moss Beach.
    Description: N.Y.K., M.N.P. and R.E.B. were supported by the NASA Virtual Planetary Laboratory team (VPL), which was funded under NASA Astrobiology Institute Cooperative Agreement Number NNA13AA93A, and Grant Number 80NSSC18K0829. This work also benefited from participation in the NASA Nexus for Exoplanet Systems Science (NExSS) research coordination network (RCN). W.D.S, N.Y.K. and M.N.P. were also supported by a NASA Exobiology grant No. 80NSSC19K0478. J.TB. was supported by the NASA Postdoctoral Program (NPP) award number NPP168014S. N.Y.K. received training support from the NASA Goddard Space Flight Center Training Office to take the Microbial Diversity course at the Marine Biological Laboratory, Woods Hole, MA, USA.
    Keywords: Chlorophyll d ; Acaryochloris ; Moss Beach ; Cyanobacteria ; Far-red photosynthesis ; Photosynthetic pigments ; Absorbance spectra ; Genome sequence
    Repository Name: Woods Hole Open Access Server
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  • 8
    Publication Date: 2022-05-27
    Description: In January 2020, the US Ocean Carbon & Biogeochemistry (OCB) Project Office funded the Ocean Nucleic Acids 'omics Intercalibration and Standardization workshop held at the University of North Carolina in Chapel Hill. Thirty-two participants from across the US, along with guests from Canada and France, met to develop a framework for standardization and intercalibration (S&I) of ocean nucleic acid ‘omics (na’omics) approaches (i.e., amplicon sequencing, metagenomics and metatranscriptomics). During the three-day workshop, participants discussed numerous topics, including: a) sample biomass collection and nucleic acid preservation for downstream analysis, b) extraction protocols for nucleic acids, c) addition of standard reference material to nucleic acid isolation protocols, d) isolation methods unique to RNA, e) sequence library construction, and f ) integration of bioinformatic considerations. This report provides a summary of these and other topics covered during the workshop and a series of recommendations for future S&I activities for na’omics approaches.
    Description: The Ocean Nucleic Acids ‘Omics Intercalibration and Standardization Workshop was supported by grants from the Ocean Carbon & Biogeochemistry Program (OCB) – funding provided by the National Science Foundation (NSF) and the National Aeronautics and Space Administration (NASA) – and the Simons Foundation. This report was developed with federal support of NSF (OCE-1558412) and NASA (NNX17AB17G).
    Repository Name: Woods Hole Open Access Server
    Type: Working Paper
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  • 9
    Publication Date: 2022-10-03
    Description: Dataset: Coral Surface Area and Zooxanthellae Counts
    Description: This dataset presents coral fragment surface area calculations utilizing two methods (tin foil and Image J) and corresponding zooxanthellae count data. Three coral species were utilized in this experiment: the octocoral, Eunicea flexuosa, and two hard coral species, Acropora cervicornis and Orbicella faveolata. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/880711
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1924540, NSF Division of Ocean Sciences (NSF OCE) OCE-1923962
    Repository Name: Woods Hole Open Access Server
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  • 10
    Publication Date: 2022-05-26
    Description: The goal of this cruise was to deploy 51 ocean bottom seismometers (OBS) and conduct rock dredges at the Quebrada/Discovery/Gofar (QDG) transform fault systems, with a focus on the Gofar system. QDG is located in the equatorial east Pacific on the East Pacific Rise (Figure 1). Sections of the Gofar and Discovery systems rupture with large (Mw 〉 5.3) earthquakes every 5-6 years, while only one event of this size has occurred on Quebrada in the last 35 years. Variations in along-strike earthquake behavior during these seismic cycles are further constrained by results from a 2008 OBS experiment on QDG. The 2008 experiment revealed the presence of ‘rupture zones’, which fail quasi-periodically in M6 earthquakes, and ‘rupture barriers’, which repeatedly stop large ruptures, yet undergo intense foreshock sequences. The current OBS deployment on Gofar is thus aimed at recording variations in stress build up, stress release, and fault strength within the context of a well-known seismic cycle.
    Description: 2022-03-03
    Repository Name: Woods Hole Open Access Server
    Type: Technical Report
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