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  • 1
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    Landscape genomics provides evidence of ecotypic adaptation and a barrier to gene flow at treeline for the arctic foundation species Eriophorum vaginatum0 (2022)
    Frontiers Media
    Details
    Publication Date: 2022-10-27
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Stunz, E., Fetcher, N., Lavretsky, P., Mohl, J., Tang, J., & Moody, M. Landscape genomics provides evidence of ecotypic adaptation and a barrier to gene flow at treeline for the arctic foundation species Eriophorum vaginatum. Frontiers in Plant Science, 13, (2022): 860439, https://doi.org/10.3389/fpls.2022.860439.
    Description: Global climate change has resulted in geographic range shifts of flora and fauna at a global scale. Extreme environments, like the Arctic, are seeing some of the most pronounced changes. This region covers 14% of the Earth’s land area, and while many arctic species are widespread, understanding ecotypic variation at the genomic level will be important for elucidating how range shifts will affect ecological processes. Tussock cottongrass (Eriophorum vaginatum L.) is a foundation species of the moist acidic tundra, whose potential decline due to competition from shrubs may affect ecosystem stability in the Arctic. We used double-digest Restriction Site-Associated DNA sequencing to identify genomic variation in 273 individuals of E. vaginatum from 17 sites along a latitudinal gradient in north central Alaska. These sites have been part of 30 + years of ecological research and are inclusive of a region that was part of the Beringian refugium. The data analyses included genomic population structure, demographic models, and genotype by environment association. Genome-wide SNP investigation revealed environmentally associated variation and population structure across the sampled range of E. vaginatum, including a genetic break between populations north and south of treeline. This structure is likely the result of subrefugial isolation, contemporary isolation by resistance, and adaptation. Forty-five candidate loci were identified with genotype-environment association (GEA) analyses, with most identified genes related to abiotic stress. Our results support a hypothesis of limited gene flow based on spatial and environmental factors for E. vaginatum, which in combination with life history traits could limit range expansion of southern ecotypes northward as the tundra warms. This has implications for lower competitive attributes of northern plants of this foundation species likely resulting in changes in ecosystem productivity.
    Description: This research was made possible by funding provided by NSF/PLR-1417645 to MM. The Botanical Society of America Graduate Student Research Award and the Dodson Research Grant from the Graduate School of the University of Texas at El Paso provided assistance to ES. The grant 5U54MD007592 from the National Institute on Minority Health and Health Disparities (NIMHD), a component of the National Institutes of Health (NIH) provided bioinformatics resources and support of JM.
    Keywords: Arctic ; Climate change ; Eriophorum vaginatum ; Landscape genomics ; Environmental niche modeling ; Genotype-environment association analyses ; Refugia
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  • 2
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    Enhanced carbon uptake and reduced methane emissions in a newly restored wetland (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-27
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Biogeosciences 125(1), (2020): e2019JG005222, doi:10.1029/2019JG005222.
    Description: Wetlands play an important role in reducing global warming potential in response to global climate change. Unfortunately, due to the effects of human disturbance and natural erosion, wetlands are facing global extinction. It is essential to implement engineering measures to restore damaged wetlands. However, the carbon sink capacity of restored wetlands is unclear. We examined the seasonal change of greenhouse gas emissions in both restored wetland and natural wetland and then evaluated the carbon sequestration capacity of the restored wetland. We found that (1) the carbon sink capacity of the restored wetland showed clear daily and seasonal change, which was affected by light intensity, air temperature, and vegetation growth, and (2) the annual daytime (8–18 hr) sustained‐flux global warming potential was −11.23 ± 4.34 kg CO2 m−2 y−1, representing a much larger carbon sink than natural wetland (−5.04 ± 3.73 kg CO2 m−2 y−1) from April to December. In addition, the results showed that appropriate tidal flow management may help to reduce CH4 emission in wetland restoration. Thus, we proposed that the restored coastal wetland, via effective engineering measures, reliably acted as a large net carbon sink and has the potential to help mitigate climate change.
    Description: We would like to thank Yangtze Delta Estuarine Wetland Ecosystem Ministry of Education & Shanghai Observation and Research Station for providing sites during our research. This research was supported by the National Key Research and Development Program of China (Grant 2017YFC0506002), the National Natural Science Foundation of China Overseas and Hong Kong‐Macao Scholars Collaborative Research Fund (Grant 31728003), the China Postdoctoral Science Foundation (Grant 2018M640362), the Shanghai University Distinguished Professor (Oriental Scholars) Program (Grant JZ2016006), the Open Fund of Shanghai Key Lab for Urban Ecological Processes and Eco‐Restoration (Grant SHUES2018B06), and the Scientific Projects of Shanghai Municipal Oceanic Bureau (Grant 2018‐03). The complete data set is available at https://data.4tu.nl/repository/uuid:536b2614‐c4ca‐43d2‐84dd‐6180fd859544.
    Keywords: Blue carbon ; Restored wetland ; Sustained‐flux global warming potential (SGWP) ; Greenhouse gas (GHG) ; Carbon sequestration capacity
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  • 3
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    Impoundment increases methane emissions in Phragmites‐invaded coastal wetlands (2022)
    Wiley
    Details
    Publication Date: 2022-10-27
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Sanders‐DeMott, R., Eagle, M., Kroeger, K., Wang, F., Brooks, T., Suttles, J., Nick, S., Mann, A., & Tang, J. Impoundment increases methane emissions in Phragmites‐invaded coastal wetlands. Global Change Biology, 28(15), (2022): 4539– 4557. https://doi.org/10.1111/gcb.16217.
    Description: Saline tidal wetlands are important sites of carbon sequestration and produce negligible methane (CH4) emissions due to regular inundation with sulfate-rich seawater. Yet, widespread management of coastal hydrology has restricted tidal exchange in vast areas of coastal wetlands. These ecosystems often undergo impoundment and freshening, which in turn cause vegetation shifts like invasion by Phragmites, that affect ecosystem carbon balance. Understanding controls and scaling of carbon exchange in these understudied ecosystems is critical for informing climate consequences of blue carbon restoration and/or management interventions. Here, we (1) examine how carbon fluxes vary across a salinity gradient (4–25 psu) in impounded and natural, tidally unrestricted Phragmites wetlands using static chambers and (2) probe drivers of carbon fluxes within an impounded coastal wetland using eddy covariance at the Herring River in Wellfleet, MA, United States. Freshening across the salinity gradient led to a 50-fold increase in CH4 emissions, but effects on carbon dioxide (CO2) were less pronounced with uptake generally enhanced in the fresher, impounded sites. The impounded wetland experienced little variation in water-table depth or salinity during the growing season and was a strong CO2 sink of −352 g CO2-C m−2 year−1 offset by CH4 emission of 11.4 g CH4-C m−2 year−1. Growing season CH4 flux was driven primarily by temperature. Methane flux exhibited a diurnal cycle with a night-time minimum that was not reflected in opaque chamber measurements. Therefore, we suggest accounting for the diurnal cycle of CH4 in Phragmites, for example by applying a scaling factor developed here of ~0.6 to mid-day chamber measurements. Taken together, these results suggest that although freshened, impounded wetlands can be strong carbon sinks, enhanced CH4 emission with freshening reduces net radiative balance. Restoration of tidal flow to impounded ecosystems could limit CH4 production and enhance their climate regulating benefits.
    Description: This project was supported by USGS-NPS Natural Resources Preservation Program #2021-07, U.S. Geological Survey Coastal & Marine Hazards and Resources Program and the USGS Land Change Science Program's LandCarbon program, and NOAA National Estuarine Research Reserve Science Collaborative NA14NOS4190145. R Sanders-DeMott was supported by a USGS Mendenhall Fellowship and partnership with Restore America's Estuaries.
    Keywords: Blue carbon ; Coastal wetland ; Dike ; Eddy covariance ; Impoundment ; Methane ; Net ecosystem exchange ; Phragmites ; Restoration ; Static chambers
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  • 4
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    Building a global ecosystem research infrastructure to address global grand challenges for macrosystem ecology (2022)
    American Geophysical Union
    Details
    Publication Date: 2022-10-27
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Loescher, H., Vargas, R., Mirtl, M., Morris, B., Pauw, J., Yu, X., Kutsch, W., Mabee, P., Tang, J., Ruddell, B., Pulsifer, P., Bäck, J., Zacharias, S., Grant, M., Feig, G., Zheng, L., Waldmann, C., & Genazzio, M. Building a global ecosystem research infrastructure to address global grand challenges for macrosystem ecology. Earth’s Future, 10(5), (2022): e2020EF001696, https://doi.org/10.1029/2020ef001696.
    Description: The development of several large-, “continental”-scale ecosystem research infrastructures over recent decades has provided a unique opportunity in the history of ecological science. The Global Ecosystem Research Infrastructure (GERI) is an integrated network of analogous, but independent, site-based ecosystem research infrastructures (ERI) dedicated to better understand the function and change of indicator ecosystems across global biomes. Bringing together these ERIs, harmonizing their respective data and reducing uncertainties enables broader cross-continental ecological research. It will also enhance the research community capabilities to address current and anticipate future global scale ecological challenges. Moreover, increasing the international capabilities of these ERIs goes beyond their original design intent, and is an unexpected added value of these large national investments. Here, we identify specific global grand challenge areas and research trends to advance the ecological frontiers across continents that can be addressed through the federation of these cross-continental-scale ERIs.
    Description: This manuscript is in part the product of several workshops and ongoing GERI development. The first workshop was the Terrestrial Ecosystem Research Network (TERN) sponsored and entitled: “Towards a Global Ecosystem Observatory”, 5–7 March 2017, University of Queensland, Brisbane Australia. Another workshop was sponsored by Chinese Academy of Sciences (CAS) and entitled: “Global Integrated Research Infrastructure component in Next Generation ILTER”, 17–20 April, 2018, South China Botanical Garden, Zhaoqing, Guangdong Province, China. The National Science Foundation (NSF) supported two workshops. The first was entitled: ‘Building a Global Ecological Understanding’ held at the University of Delaware, Newark Delaware, 3–6 June, 2016 (NSF 1347883) and the second entitled: “Global Environmental Research Infrastructure (GERI) Planning Workshop”, held at NEON HQ, Boulder Colorado, 25–27 June 2019 (NSF 1917180). The authors wish to thank the workshop attendees for their thoughtful contributions. NEON is a project sponsored by the NSF and managed under cooperative support agreement (DBI-1029808) to Battelle.
    Keywords: Environmental research infrastructure ; Macrosystem science ; Interoperability ; Societal benefit ; New capabilities ; Federating infrastructure
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  • 5
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    Cover crops and chicken grazing in a winter fallow field improve soil carbon and nitrogen contents and decrease methane emissions (2020)
    Nature Research
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Zheng, H., Zhou, L., Wei, J., Tang, Q., Zou, Y., Tang, J., & Xu, H. Cover crops and chicken grazing in a winter fallow field improve soil carbon and nitrogen contents and decrease methane emissions. Scientific Reports, 10(1), (2020): 12607, doi:10.1038/s41598-020-69407-y.
    Description: Using symbiotic farming methods [cover crops and chicken grazing (+ C)] in a winter fallow field, we found that the soil organic matter and total nitrogen of the + C treatment were 5.2% and 26.6% higher, respectively, than those of a treatment with cover crops and no chicken grazing (− C). The annual rice grain yield of the + C treatment was 3.8% higher than that of the − C treatment and 12.3% higher than that of the bare fallow field (CK), while the annual CH4 emissions of the + C treatment were 26.9% lower than those of the − C treatment and 10.6% lower than those of the CK treatment. The 100-year global warming potential of the + C treatment was 6.2% lower than that of the − C treatment. Therefore, the use of winter cover crops and chicken grazing in a winter fallow field was effective at reducing CH4 emissions and significantly improving soil nutrients and rice yield.
    Description: This study was supported by the Earmarked Fund for China Agriculture Research System (CARS-01-26), the China-UK joint Red Soil Critical Zone project from the National Natural Science Foundation of China (Grant No. 41571130053), and Hunan “A Hundred Scholars” Program.
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  • 6
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    Comparative transcriptomics of an arctic foundation species, tussock cottongrass (Eriophorum vaginatum), during an extreme heat event (2020)
    Nature Research
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Mohl, J. E., Fetcher, N., Stunz, E., Tang, J., & Moody, M. L. Comparative transcriptomics of an arctic foundation species, tussock cottongrass (Eriophorum vaginatum), during an extreme heat event. Scientific Reports, 10(1), (2020): 8990, doi:10.1038/s41598-020-65693-8.
    Description: Tussock cottongrass (Eriophorum vaginatum) is a foundation species for much of the arctic moist acidic tundra, which is currently experiencing extreme effects of climate change. The Arctic is facing higher summer temperatures and extreme weather events are becoming more common. We used Illumina RNA-Seq to analyse cDNA libraries for differential expression of genes from leaves of ecologically well-characterized ecotypes of tussock cottongrass found along a latitudinal gradient in the Alaskan Arctic and transplanted into a common garden. Plant sampling was performed on a typical summer day and during an extreme heat event. We obtained a de novo assembly that contained 423,353 unigenes. There were 363 unigenes up-regulated and 1,117 down-regulated among all ecotypes examined during the extreme heat event. Of these, 26 HSP unigenes had 〉log2-fold up-regulation. Several TFs associated with heat stress in previous studies were identified that had 〉log2-fold up- or down-regulation during the extreme heat event (e.g., DREB, NAC). There was consistent variation in DEGs among ecotypes, but not specifically related to whether plants originated from taiga or tundra ecosystems. As the climate changes it is essential to determine ecotypic diversity at the genomic level, especially for widespread species that impact ecosystem function.
    Description: We thank Thomas Parker for providing crucial logistical support at Toolik Field station and Darrel Dech, Stephen Turner, and Mayra Melendez for assistance in field sampling. Funding for this research was provided through the National Science Foundation (NSF/PLR 1418010 to NF, NSF/PLR 1417645 to MLM, NSF/PLR 1417763 to JT) and JEM received funding in part from NIH Grant #5G12RR007592 from the National Center for Research Resources (NCRR)/NIH to UTEP’s Border Biomedical Research Center. Significant logistic support came from Toolik Field Station and the Arctic LTER (NSF/PLR 1637459).
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  • 7
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    Evaluation of simulated soil carbon dynamics in Arctic-Boreal ecosystems (2020)
    IOP Publishing
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Huntzinger, D. N., Schaefer, K., Schwalm, C., Fisher, J. B., Hayes, D., Stofferahn, E., Carey, J., Michalak, A. M., Wei, Y., Jain, A. K., Kolus, H., Mao, J., Poulter, B., Shi, X., Tang, J., & Tian, H. Evaluation of simulated soil carbon dynamics in Arctic-Boreal ecosystems. Environmental Research Letters, 15(2), (2020): 025005, doi:10.1088/1748-9326/ab6784.
    Description: Given the magnitude of soil carbon stocks in northern ecosystems, and the vulnerability of these stocks to climate warming, land surface models must accurately represent soil carbon dynamics in these regions. We evaluate soil carbon stocks and turnover rates, and the relationship between soil carbon loss with soil temperature and moisture, from an ensemble of eleven global land surface models. We focus on the region of NASA's Arctic-Boreal vulnerability experiment (ABoVE) in North America to inform data collection and model development efforts. Models exhibit an order of magnitude difference in estimates of current total soil carbon stocks, generally under- or overestimating the size of current soil carbon stocks by greater than 50 PgC. We find that a model's soil carbon stock at steady-state in 1901 is the prime driver of its soil carbon stock a hundred years later—overwhelming the effect of environmental forcing factors like climate. The greatest divergence between modeled and observed soil carbon stocks is in regions dominated by peat and permafrost soils, suggesting that models are failing to capture the frozen soil carbon dynamics of permafrost regions. Using a set of functional benchmarks to test the simulated relationship of soil respiration to both soil temperature and moisture, we find that although models capture the observed shape of the soil moisture response of respiration, almost half of the models examined show temperature sensitivities, or Q10 values, that are half of observed. Significantly, models that perform better against observational constraints of respiration or carbon stock size do not necessarily perform well in terms of their functional response to key climatic factors like changing temperature. This suggests that models may be arriving at the right result, but for the wrong reason. The results of this work can help to bridge the gap between data and models by both pointing to the need to constrain initial carbon pool sizes, as well as highlighting the importance of incorporating functional benchmarks into ongoing, mechanistic modeling activities such as those included in ABoVE.
    Description: This work was supported by NASA'S Arctic Boreal Vulnerability Experiment (ABoVE; https://above.nasa.gov); NNN13D504T. Funding for the Multi-scale synthesis and Terrestrial Model Intercomparison Project (MsTMIP; https://nacp.ornl.gov/MsTMIP.shtml) activity was provided through NASA ROSES Grant #NNX10AG01A. Data management support for preparing, documenting, and distributing model driver and output data was performed by the Modeling and Synthesis Thematic Data Center at Oak Ridge National Laboratory (MAST-DC; https://nacp.ornl.gov), with funding through NASA ROSES Grant #NNH10AN681. Finalized MsTMIP data products are archived at the ORNL DAAC (https://daac.ornl.gov). We also acknowledge the modeling groups that provided results to MsTMIP. The synthesis of site-level soil respiration, temperature, and moisture data reported in Carey et al 2016a, 2016b) was funded by the US Geological Survey (USGS) John Wesley Powell Center for Analysis and Synthesis Award G13AC00193. Additional support for that work was also provided by the USGS Land Carbon Program. JBF carried out the research at the Jet Propulsion Laboratory, California Institute of Technology, under a contract with the National Aeronautics and Space Administration. California Institute of Technology. Government sponsorship acknowledged.
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  • 8
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    Tidal wetland resilience to sea level rise increases their carbon sequestration capacity in United States (2020)
    Nature Research
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Wang, F., Lu, X., Sanders, C. J., & Tang, J. Tidal wetland resilience to sea level rise increases their carbon sequestration capacity in United States. Nature Communications, 10(1), (2019): 5434, doi: 10.1038/s41467-019-13294-z.
    Description: Coastal wetlands are large reservoirs of soil carbon (C). However, the annual C accumulation rates contributing to the C storage in these systems have yet to be spatially estimated on a large scale. We synthesized C accumulation rate (CAR) in tidal wetlands of the conterminous United States (US), upscaled the CAR to national scale, and predicted trends based on climate change scenarios. Here, we show that the mean CAR is 161.8 ± 6 g Cm−2 yr−1, and the conterminous US tidal wetlands sequestrate 4.2–5.0 Tg C yr−1. Relative sea level rise (RSLR) largely regulates the CAR. The tidal wetland CAR is projected to increase in this century and continue their C sequestration capacity in all climate change scenarios, suggesting a strong resilience to sea level rise. These results serve as a baseline assessment of C accumulation in tidal wetlands of US, and indicate a significant C sink throughout this century.
    Description: This study was partially funded by Natural Science Foundation of China (31300419, 31670621, 31870463), the Key Special Project for Introduced Talents Team of Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) (GML2019ZD0408), R&D Program of Guangdong Provincial Department of Science and Technology (2018B030324003) and Pearl River Nova Program of Guangzhou (201710010140) awarded to F.W. J.T. is supported by the NOAA National Estuarine Research Reserve Science Collaborative (NA09NOS4190153 and NA14NOS4190145). C.J.S. is supported by Australian Research Council (DE160100443).
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  • 9
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    Soil carbon consequences of historic hydrologic impairment and recent restoration in coastal wetlands (2022)
    Association for the Sciences of Limnology and Oceanography
    Details
    Publication Date: 2022-11-15
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Eagle, M. J., Kroeger, K. D., Spivak, A. C., Wang, F., Tang, J., Abdul-Aziz, O. I., Ishtiaq, K. S., O’Keefe Suttles, J., & Mann, A. G. Soil carbon consequences of historic hydrologic impairment and recent restoration in coastal wetlands. The Science of the Total Environment, 848, (2022): 157682, https://doi.org/10.1016/j.scitotenv.2022.157682.
    Description: Coastal wetlands provide key ecosystem services, including substantial long-term storage of atmospheric CO2 in soil organic carbon pools. This accumulation of soil organic matter is a vital component of elevation gain in coastal wetlands responding to sea-level rise. Anthropogenic activities that alter coastal wetland function through disruption of tidal exchange and wetland water levels are ubiquitous. This study assesses soil vertical accretion and organic carbon accretion across five coastal wetlands that experienced over a century of impounded hydrology, followed by restoration of tidal exchange 5 to 14 years prior to sampling. Nearby marshes that never experienced tidal impoundment served as controls with natural hydrology to assess the impact of impoundment and restoration. Dated soil cores indicate that elevation gain and carbon storage were suppressed 30–70 % during impoundment, accounting for the majority of elevation deficit between impacted and natural sites. Only one site had substantial subsidence, likely due to oxidation of soil organic matter. Vertical and carbon accretion gains were achieved at all restored sites, with carbon burial increasing from 96 ± 33 to 197 ± 64 g C m−2 y−1. The site with subsidence was able to accrete at double the rate (13 ± 5.6 mm y−1) of the natural complement, due predominantly to organic matter accumulation rather than mineral deposition, indicating these ecosystems are capable of large dynamic responses to restoration when conditions are optimized for vegetation growth. Hydrologic restoration enhanced elevation resilience and climate benefits of these coastal wetlands.
    Description: This project was supported by the U.S. Geological Survey Coastal and Marine Hazards and Resources Program and the USGS Land Change Science Program's LandCarbon program, NOAA National Estuarine Research Reserve Science Collaborative NA14NOS4190145, and MIT Sea Grant 2015-R/RC-141. Contributions of Abdul-Aziz were also supported by NSF CBET Environmental Sustainability Award No. 1705941. Our stakeholder partners, including the Cape Cod National Seashore, Waquoit Bay National Estuarine Research Reserve, and the Bringing Wetlands to Market project team, and Towns and Conservation Commissions, including Eastham, Barnstable, Brewster, Yarmouth, Denis, Sandwich and Orleans, were instrumental in providing research support and site access.
    Keywords: Salt marsh ; Restoration ; Impoundment ; Soil organic carbon ; Vertical accretion
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